BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476017

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G68905.1 | Symbols:  | Defensin-like (DEFL) family protein |...   274    3e-73
  AT1G68907.1 | Symbols:  | Defensin-like (DEFL) family protein |...   191    3e-48


> AT1G68905.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:25906716-25907092 REVERSE LENGTH=288
Length=288

 Score =  274 bits (148),  Expect = 3e-73
 Identities = 247/290 (85%), Gaps = 26/290 (9%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAACATCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAATCATAGCATTTTGC  60
            ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| 
Sbjct  1    ATGGAGAAAACGTCTCTCAAGCTTATCTTCTTGTTCTCCCTCACAGTCATAGCATTTTGT  60

Query  61   TCGTCTTTAGGTGATGCCAGAGAGATGGTGAAAGAAGAAGTGAATTGCATCGGCGGCAAA  120
            || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct  61   TCATCTTTAGGTGATGCTAGAGAGATGGTGAAAGCAGAAGTGAATTGCATCGGCGGCAAA  120

Query  121  TGTCCCAAAGGAAAGAAGAACTGTAATTGCTTGCCGCCGATAGCACAT---A---A--A-  171
            |||||  ||||||||||||||||||||||| |||| ||||||||||||   |   |  | 
Sbjct  121  TGTCCTGAAGGAAAGAAGAACTGTAATTGCATGCCACCGATAGCACATGTGATGGATGAT  180

Query  172  AT--GGAC----AAT-C-GAC-----CTGCAACAAGTACTGTCCTAGGGAATGCGAGCTT  218
            ||  || |    ||| | ||      |||| |||||| ||||||||||||||||||||||
Sbjct  181  ATCAGGCCTTGCAATACAGATGGTGACTGCTACAAGTTCTGTCCTAGGGAATGCGAGCTT  240

Query  219  GGAACCTGTGT-CTGTTCG-TGTGACTATGGTTGTACATGTACCTGTTGA  266
            ||||| ||| | |||| || ||||| ||||||||||||||||||||||||
Sbjct  241  GGAACTTGT-TACTGT-CGGTGTGATTATGGTTGTACATGTACCTGTTGA  288


> AT1G68907.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:25907508-25907891 REVERSE LENGTH=291
Length=291

 Score =  191 bits (103),  Expect = 3e-48
 Identities = 155/180 (86%), Gaps = 4/180 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAACATCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAATCATAGCATTTTGC  60
            ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || 
Sbjct  1    ATGGAGAAAACGTCTCTCAAGCTTGTCTTCTTGTTCTCCCTCACAGTCATAGCATTGTGT  60

Query  61   TCGTCTTT-AGGTGATGCCAGAGAGATGGTGAAAGAAGAAGTGAATTGCATCGGCGGCAA  119
            | |||||| || ||  || |||||||||| ||||||||||||||||||||| |||||| |
Sbjct  61   TTGTCTTTGAG-TGCCGCGAGAGAGATGGCGAAAGAAGAAGTGAATTGCATAGGCGGCCA  119

Query  120  ATGTCCCAAAGGAAAGAAGAACTGTAATTGCTTGCCGCCGATAGCACATAA-AATGGACA  178
             |||||  | ||||||||| ||||||| |||||||| |  |||||||  || ||||||||
Sbjct  120  TTGTCCTGATGGAAAGAAGGACTGTAACTGCTTGCCTCTTATAGCACC-AACAATGGACA  178



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5