BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476019
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68910.1 | Symbols: WIT2 | WPP domain-interacting protein 2 ... 3192 0.0
> AT1G68910.1 | Symbols: WIT2 | WPP domain-interacting protein
2 | chr1:25908131-25911108 REVERSE LENGTH=2060
Length=2060
Score = 3192 bits (1728), Expect = 0.0
Identities = 1910/1997 (96%), Gaps = 16/1997 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAATCATTAGGGAGGATC-ATGGTGAAGCTTTGTCTAGTAGGAGTGAGGAGGA 59
||||||||||||||||||||||| | || |||||||||||||||||||| |||||| ||
Sbjct 74 ATGGAGGAAATCATTAGGGAGGA-CTATTTTGAAGCTTTGTCTAGTAGGAATGAGGAAGA 132
Query 60 GCAAGAGATGTTGAGGATGTTGACAAAACTAGAAATAGACTCAGCTTATACTAGTGAAAA 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 133 GCAAGAGATGTTGAGGATGTTGACAAAACTAGAGATAGACTCAGCTTATACTAGTGAAAA 192
Query 120 GCTGCTGAACCTGCATGTTCTTCTTATGCATCTTTTGGCATGGGATAATGATCTTGAAGG 179
| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTTGATGAATCTGCATGTTCTTCTTATGCATCTTTTGGCATGGGATAATGATCTTGAAGG 252
Query 180 GATGGGGACACCTGATTCTTCTCCAGCATCCTTTGAAAAAGCTTTGGCGTTTGATCTGTT 239
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 253 GATGGGGACACTTGATTCTTCTCCAGCATCCTTTGAAAAAGCTTTGACGTTTGATCTGTT 312
Query 240 ATGCGGTATATTGGAGTC-GGAGTTAAAGGAGGTGGACGAGGTTTTGGATGTGTTGGAAG 298
|||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||
Sbjct 313 ATGCGGTATATTGGAGTCAGAAG-TGAAGGAGGTGGACGAGGTTTTGGATGTGTTGGAAG 371
Query 299 CCCAAATCGTTGACACTTCTTATAAGATATCATCTTGCAAACATGCAAATTATATCGTTG 358
| ||||| |||||||||||||| |||||||| ||||||||||| | ||||||||| |||
Sbjct 372 CTCAAATAGTTGACACTTCTTACAAGATATCTTCTTGCAAACACGGAAATTATATTGTTA 431
Query 359 TCGAAGGCAAGTTGGGTGAATCTGCAGAATCCTTGAAGCAGTCTAGAGGACAAGTCTCAG 418
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 432 TTGAAGGAAAGTTGGGTGAATCTGCAGAATCATTGAAGCAGTCTAGAGGACAAGTCTCAG 491
Query 419 AGATCACTTTGCAATTAGCTCAGCTCCGAAGAACACTTCATTACATAAGAAATGGAACAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AGATCACTTTGCAATTAGCTCAGCTCCGAAGAACACTTCATTACATAAGAAATGGAACAA 551
Query 479 GTGAAAACGAGGAGTCAGTGGAGTTAAGGCAGAAATATGCGCTGAAACCATCGGACTTAA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 552 GTGAAAACGAGGAGTCAGTGGAGTTAAGGCAGAAATATGCGCTGAAACCATCGGACTTGA 611
Query 539 GGCATAAAAATGCTTTGAGGATGCTAGAGAAGTCATTGTCAAGAGAGCTAGAGCTTGAGA 598
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 612 GGCATAAAAATGCTCTGAGGATGCTGGAGAAGTCATTGTCAAGAGAGCTAGAGCTTGAGA 671
Query 599 AGAAGTTAATGGAATTCCAGCAAAATGAAGAACAATTGAAACTCAAGCTACACTACACAG 658
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 672 AGAAGTTAATGGAATTCCAGCAAAATGAGGAACAGTTGAAACTCAAGCTACACTACACAG 731
Query 659 AGGAGGTATCTTCTCGGATGGAAGAAGCATCAGAGTTTATATGGGGACGGTTTCTAGAGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AGGAGGTATCTTCTCGGATGGAAGAAGCATCAGAGTTTATATGGGGACGGTTTCTAGAGG 791
Query 719 CAGATAATTCTTCAGAGGTGCTTACGGGTATTTCAAAAGAACTTGTTGGTCGTCTACAGA 778
||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 792 CAGATAATTCTTCTGAGGTTCTTACAGGTATTTCAAAGGAACTTGTTGGTCGTCTACAGA 851
Query 779 TTCTCCAGTTTAGTCTGAATGGGTCAGCCCAACGGGAATCCGAACTTAAGTCTAAGCTTG 838
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 852 TTCTCCAGTTTAGTCTGAATGGGTCAGCACAACGGGAATCCGAACTTAAGTCTAAGCTTG 911
Query 839 AAGATTGCACTGTACAGCTCGAAACGAAAGATCTTCTGGTGCAAAAGCTTGAGGGAACAA 898
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 912 AAGATTGCACTGTACAACTGGAAGCGAAAGATCTTCTGGTGCAAAAGCTTGAGGGAACAA 971
Query 899 TTGCAGAAAATAGTGAGATAGTTTCAGAAGTACTCACTTTGAGGGAATATGTGAAGTCAG 958
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TTTCAGAAAATAGTGAAATAGTTTCAGAAGTACTCACTTTGAGGGAATATGTGAAGTCAG 1031
Query 959 CTGAACAAAAACTGAAAAATACCGAGCTTGAGCTGAAAAGTGTCAACGCCTCCAAACAAG 1018
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1032 CTGAACAAAAGCTGAAAAATACCGACCTTGAGCTGAAAAGTGTCAACGCCTCCAAACAAG 1091
Query 1019 AAATCCTGGTACATCTAGCTGAAATGGAAAATGCAAATGAGTCGGTCAAAGAAAACCTTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AAATCCTGGTACATCTAGCTGAAATGGAAAATGCAAATGAGTCGGTCAAAGAAAACCTTT 1151
Query 1079 TCGAGGCTGAAAGCAGAGCTGAGACTGGAGAAGCTAAGATTAAAGAGCTAAATGCTGCAA 1138
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1152 TCGAGGCTGAAAGCAGAGCTGAGAGTGGAGAAGCTAAGATTAAAGAGCTAGATGCTGCAA 1211
Query 1139 ATCTTGAACTTACTGAGGAACTAAATTTTCTCAAAGATGCTGATGATAAAAAGACAAAGA 1198
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1212 ATCTTGAACTTACTGAGGAACTAAATTTTCTCAAAGATGCGGATGATAAAAAGACGAAGA 1271
Query 1199 AGGTGAACTCTCTCGAGAAGCAAGTCAGGGAATTAGAAGTTCAAGTACAAAACTCCAAGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 AGGTGAACTCTCTCGAGAAGCAAGTCAGGGAATTAGAAGTTCAAGTACAAAACTCCAAGG 1331
Query 1259 TATCATCAGAAGCAAGTCAAGAACAGCAGAACATGTTGTATTCAGCAATATGGGACATGG 1318
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TATCATCAGAAGCAAATCAAGAACAGCAGAACATGTTGTATTCAGCAATATGGGACATGG 1391
Query 1319 AGACCTTAATCGAAGATCTCAAGTCTAAAGCCTCAAAAGCCGAGAGTAGAATGGAGACAG 1378
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1392 AGACCTTAATAGAAGATCTCAAGTCTAAAGCCTCAAAAGCCGAGAGTAGAACGGAGACAG 1451
Query 1379 TGGAGGAGCAATGCATTGTGCTTTCTACCACAAACTCTGAACTCAACAAAGACGTGACCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1452 TGGAGGAGCAATGCATTGTGCTTTCTACCACAAACTCTGAACTCAACAAAGACGTGAGCT 1511
Query 1439 TTTTGAGGCAAAAAGCCAAATCCTTAGAAGCATTGTTGGAACTAGCTAACGATGAGAAAG 1498
|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 1512 TTTTGAGGCAAAAAGCCAAATCCTTAGAAGCAATGTTGGATCTAGCTAACAATGAGAAAG 1571
Query 1499 AGAGATATGCACAAGAAATAACTACACGGAACAAGGTTTTGATGGATATGATGTTGCAAT 1558
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1572 AGAGATATGCACAAGAAATAACTACAAGGAACAAAGTTTTGATGGATATGATGTTGCAAT 1631
Query 1559 TATCCAGTGAAAGGGAGCGTATACAAGAGCAGCTATATTCTTTGGCAAAGGAAAACAAAA 1618
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1632 TATCCAGTGAAAGGGAGCGTATACAAGAGCAGCTATATTCTTTGGCAAAAGAAAACAAAA 1691
Query 1619 TACTGAGAGTGAATCAATGCTCAAATACATACCAAAGAAATGGATCTTATGCTGGGGACA 1678
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TACTTAGAGTGAATCAGTGCTCAAATACATACCAAAGAAATGGATCTTATGCTGGGGACA 1751
Query 1679 AAGAGCTG-CAGTTACACACAGACGGTCACGGAATAGAGGCACTGGCTGAAAGTCTGCAG 1737
|||||||| | ||| ||| |||| ||||||| |||||||||||| |||||||||||||||
Sbjct 1752 AAGAGCTGTC-GTTTCACGCAGATGGTCACGAAATAGAGGCACTTGCTGAAAGTCTGCAG 1810
Query 1738 AAGGATGAGAGAACAAGGAAAGAACCAGAGAACCAGTCTGTGTCTGAAAAGAGTAGCACG 1797
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1811 GAGGATGAGAGAACAAGGGAAGAACCAGAGAAGCAGTCTGTGTCTGAAAAGAGTAGC--G 1868
Query 1798 TGCACGGAGATCAGAAGGGCAAGCAACTTGAAACACATACCAGTTTTGGCCTTAGTTTTT 1857
| | | ||||||| |||| ||| ||||||||||||| |||| ||||||||||||||
Sbjct 1869 ---A-G-A--TCAGAAGAGCAATCAAATTGAAACACATACTAGTTGTGGCCTTAGTTTTT 1921
Query 1858 GTGCTGTTATGTTCATTCTTTGGTGTGACTTATTAAGGAAATATATCTTCAGTGAAAATG 1917
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1922 GTGCTGTTTTGTTCATTCTTTGGTGTGACTTATTAAGGAAATATATCTT-AGTGAAAATG 1980
Query 1918 TCTTGGCAATAGCATTCGCCATTTGTACATTGTGTTGTAAATACTCATTTATCTTGTATT 1977
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TCTTGGCCATAGCATTCGCCATTTGTACATTGTGTTGTAAATACTCATTTATCTTGTATT 2040
Query 1978 TATTACAAGCAATGTAT 1994
|||||||||||||||||
Sbjct 2041 TATTACAAGCAATGTAT 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98794672560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5