BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476021
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 3360 0.0
> AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915012-25917906 FORWARD
LENGTH=2300
Length=2300
Score = 3360 bits (1819), Expect = 0.0
Identities = 2148/2301 (93%), Gaps = 46/2301 (2%)
Strand=Plus/Plus
Query 3 GCAAATTATAATGCTTGAATACTTTGGCTATGGCGGTGTTTATGTTTAATGATCAAAAAG 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCAAATTATAATCCTTGAATACTTTGGCTATGGCGGTGTTTATGTTTAATGATCAAAAAG 60
Query 63 CTCTGTTTTTTATGCAAGCGTGGGTAT-AAATCCAGAACcttttctgattttatttttct 121
||||||||||||||||||||||||||| |||||||| ||||||| || | |||||
Sbjct 61 CTCTGTTTTTTATGCAAGCGTGGGTATAAAATCCAGTTCCTTTTCCGA---T-TTTTT-G 115
Query 122 tctcctttcttcttcttcttcacttcctttttttttttcttctCCATTTCTaaaaaaaGC 181
| | | ||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 116 T-T-C-TTC--CTTCTTCTTCACTTCC----TTTTTTTCTTCTCCATTTCTCAAAAAGGC 166
Query 182 CACTCGTTTGCTTATCTTTTTCTCTCTCTGCAGCTGAAGAACAGAG-AAAAGGG-TTTTT 239
||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 167 CACTCCTTTGCTTATCTTTCTCTCTCTCTGCAGCTGAAGAACAGAGAAAAAGGGTTTTTT 226
Query 240 ATTATCTGACCCAAAGGACCCAGTTTCAATTCAGCTTTTGTTGTTAGAAATTGAGGAAAA 299
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 227 ATTGTCTGACCCAAAGGACCCAGTTTCAATTCAGCTTTTGTTGTTAGAAATTGAGGTAAA 286
Query 300 AGATTCAAAATTTGTTCATAAAGTGGTGGCACATATTCTGTAATATGGGTATCTTTCTTC 359
|||||||||||||||||| ||| |||||||| |||||| || || |||||||||||
Sbjct 287 AGATTCAAAATTTGTTCAGAAA--AGTGGCACAGATTCTGAAAAATTAATATCTTTCTTC 344
Query 360 TGACTCTTTTAGCTCGATTATTAGCTTAAATCTGGTTTAGGGTTTTTGGAGTTTGCACGG 419
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
Sbjct 345 TCACTCTTTTAGCTCGATTCTAAGCTTAAATCTGGTTTAGGGTTTTTGGAGTTTGTACTG 404
Query 420 ATAAATCATGATCCTTTTTGTCTTCCGTTGACTGATACTGTTCCTTTTCTGAATCTAGTG 479
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| || ||
Sbjct 405 ATAAAGCATGATCCTTTTTGTCTTCCGTTGACTGATTCTGTTCCTTTTCTCAATATATTG 464
Query 480 ATTTGGGTTTCTCTTGTTCTTCATTGAATCATTGTTCTTCAAGGTGGATGTATCACTAAA 539
||||||| |||||||||||||||| ||||||||| ||||||||||| |||| | |
Sbjct 465 ATTTGGGCTTCTCTTGTTCTTCATCGAATCATTGGTCTTCAAGGTGAATGTGTTTGT-GT 523
Query 540 AAACG-AAGT-TTGGTTGGTTTGTAGTGGTTTTGATCTTGGAGGGTTTT-TGA-T--T-A 592
| | |||| || |||||||||||||||||||||||||||| | |||| ||| | | |
Sbjct 524 AGTGGCAAGTCTT-GTTGGTTTGTAGTGGTTTTGATCTTGGA-GATTTTCTGATTAGTGA 581
Query 593 GTGGTGTTCATCAAGTTTTAGAATTGAAGATGGATATAAGTGAGAAAGATGAGTTTTCAG 652
|||||||||||||||| |||||| |||||||||| |||||| |||||||||||||||||
Sbjct 582 GTGGTGTTCATCAAGTATTAGAA--GAAGATGGATTTAAGTGCGAAAGATGAGTTTTCAG 639
Query 653 CAGAGAAGAGGAATCCTGATAGCTATGATT-TGGTTAGTAATCCGTCTGGAGATTGGCGA 711
||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||
Sbjct 640 CAGAGAAGAGGAATCCTGATAACTATGATTCT-GTTAATAATCCGTCTGGAGATTGGCGA 698
Query 712 GTTGATTCATATCCTTCAGAGAATCTGATATCAGCTGGTCCTGCGTCTTGTTCTCCATCT 771
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 699 GTTGATTCATATCCTTCAGAGAATCTGATTTCAGCTGGTCCTGCGTCTTGTTCTCCTTCT 758
Query 772 CAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTG 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTT 818
Query 832 GGTTATGGCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAATATTGAT 891
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 819 GGTTATGCCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAGTATTGAT 878
Query 892 AGATCTCTTGAAATGGGTTGGAACCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTT 951
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 879 AGATCTCTTGAAATGGGTTGGAATCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTT 938
Query 952 TTCCTGCCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCA 1011
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TTCTTACCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCA 998
Query 1012 GGGTTTATAGAGCGTGCTGCGAGGTTTTCGCTCTTTAGTGGTGGGAATTTTAGTGATATG 1071
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 999 GGTTTTATAGAGCGTGCAGCGAGGTTTTCGCTCTTTAGCGGTGGGAATTTTAGTGATATG 1058
Query 1072 GTGAATCAACCACTTGGGAATCCTGAGTCGATTGGTTTGTTTCTTCAAGGTGGTGGAACA 1131
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 1059 GTGAATCAACCACTTGGGAATTCTGAGGCTATTGGTTTGTTTCTTCAAGGTGGTGGAACA 1118
Query 1132 ATGCAAGGGCTGTGTCAATGTGATGAACATAATGTTGGTGATCCTCACAATGATGTATCT 1191
|||||||||| ||||||| || |||||| |||||||||||| ||||||||||||||||||
Sbjct 1119 ATGCAAGGGCAGTGTCAAAGTAATGAACTTAATGTTGGTGAACCTCACAATGATGTATCT 1178
Query 1192 ACAGCAGTGAAAGACCCAACTGTTAGATCTTCTGAACAAGCTAAACCGAATGTTCCTGGA 1251
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1179 GTAGCAGTGAAAGAATCAACTGTTAGATCTAGTGAACAAGCTAAACCGAATGTTCCTGGA 1238
Query 1252 TCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAACGGTCGGAAAGGCAGAGAA 1311
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1239 TCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAATGGTCAGAAAGGCAGAGAA 1298
Query 1312 ACTTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGGTGAATTCTGAAGCAGCTCAG 1371
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1299 ACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGAAGAACTCTGAAGCAGCTCAA 1358
Query 1372 TCACACAGATCTCAGCAATCTGAGGAAGAACCAGACAATAATGGTGATAAAAAGCGGAAT 1431
||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 1359 TCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAAT 1418
Query 1432 AG-TGAGCAAAGTCCAAATTCACCTGGAAACAAGACAAACAGTGGGAAACAACAGGGTAA 1490
| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 1419 -GATGAGCAAAGTCCAAATTCACCTGGAAAGAAGTCAAACAGTGGGAAACAACAGGGCAA 1477
Query 1491 ACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTGCGGGCACGAAGAGGCCAGGC 1550
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1478 ACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTACGGGCACGAAGAGGCCAGGC 1537
Query 1551 TACAAATAGCCATAGTCTTGCAGAAAGGGTTAGGAGAGAAAAAATTAGTGAAAGGATGAA 1610
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1538 CACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGGATGAA 1597
Query 1611 GTTTCTTCAAGATCTTGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGA 1670
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 GTTTCTTCAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGA 1657
Query 1671 CGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACT 1717
Query 1731 TGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACT 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACT 1777
Query 1791 TCAACTACGAGCTGGTTCTTCATCTACTACAACACCATTCACC-CCAAATATGGCAATGG 1849
||||||||||||||||||||||||||| | | |||||||| || ||||||||| ||||||
Sbjct 1778 TCAACTACGAGCTGGTTCTTCATCTAC-A-A-CACCATTC-CCACCAAATATGTCAATGG 1833
Query 1850 CTTATCCTCCTCTACCACATGGATTCATGCAACAAACCCTTTCCAGCATCGGAAGGACCA 1909
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1834 CTTATCCTCCTCTACCTCATGGATTCATGCAACAAACTCTTTCCAGCATTGGAAGGACCA 1893
Query 1910 TTAGCTCTCCATTGTCTTCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGG 1969
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 TTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGG 1953
Query 1970 AGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACC 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 AGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACC 2013
Query 2030 CTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGATATT 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 CTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGATATT 2073
Query 2090 TCTTCTTGTTAGATAGAATATTAAATTATTGTAATCtttttttttttttctttttAAAAG 2149
|| || |||||||||||||||||||||||||||||||||||| ||| || | |||||| |
Sbjct 2074 TCGTCCTGTTAGATAGAATATTAAATTATTGTAATCTTTTTTATTTATT-TATTTAAA-G 2131
Query 2150 TTACTATATGTACTATATTATAATGATGTTACTATTAACGAATACGATACT-ACGACTA- 2207
|| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 2132 TTGCTATATGTACTATATTGTAATGATGTTACTATTAACGAATACGATACTTA-GACTAA 2190
Query 2208 -CTACTACTAAGCCTTTGAGATTAGTGGAAGAAGAGTATAAATTGTGAACACCAACAATG 2266
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2191 ACTACTACTAAGCGTTTGAGATTAGTGGAAGAAGAGTATAAACTGTGAACACCAACAATG 2250
Query 2267 CAAAATAGTTTTGTATAAGTC 2287
|||||||||||||||||||||
Sbjct 2251 CAAAATAGTTTTGTATAAGTC 2271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113503432245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5