BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476027
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2723 0.0
AT1G69290.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1764 0.0
AT1G69280.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 706 0.0
> AT1G68980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:25932998-25935030 FORWARD LENGTH=2033
Length=2033
Score = 2723 bits (1474), Expect = 0.0
Identities = 1761/1899 (93%), Gaps = 22/1899 (1%)
Strand=Plus/Plus
Query 1 GAGACGATTCCTTGTTTCTCGAATGTTGAGAAAGACTCTAACTTTAATCTCACTAAGAAG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAGACGATCCCTTGTTTCTCGAATGTTGAGAAAGACTCTAACTTTAATCTCACTAAGAAG 63
Query 61 ACCCTTCTCTTCAATTTCCCGAAAACCATCGCCTAAAACCCTAACCCCACACCAAAAGTC 120
|||||||||||||| || | || | ||||||||||||||||||||||||||||
Sbjct 64 ACCCTTCTCTTCAA-TT--C-----CC-T---CTAAAACCCTAACCCCACACCAAAAGTC 111
Query 121 CTCCTTTGAATCTACTCTCCACCATTCACTAATCACCCACGACACTGATCAAGCATGGAA 180
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 112 TTCCTTTGAATCAACTCTCCACCATTCCCTAATCACCCACGACACTGATCAAGCATGGAA 171
Query 181 GGTCTTCCGATCCTTCGCCGCCGCTTCTTCTCTCCCCGACAAGCGTCTCCTCAATTCTCT 240
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 172 GGTCTTCCGATCCTTCGCTGCCGCTTCTTCTCTCCCGGACAAGCGTCTCCTCAATTCTCT 231
Query 241 CATCACCCACTTGTCCTCCTTCCACCACGCAGATCAAAACACCTCCCTCAGGCACAGACT 300
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 232 CATCACCCACTTGTCCTCCTTCCACAACACAGATCAAAACACCTCCCTCAGGCACAGACT 291
Query 301 CAAGCGTGCCTTTGTTTCCACGACTTACGTCATCGAGAAAGATCCGATTTTGCTTGAGTT 360
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 292 CAAGCGTGCCTTTGTTTCCACGACTTATGTAATCGAGAAAGATCCGATTTTGCTTGAGTT 351
Query 361 TGAGACCATCCGTACGGTTTTGGAGTCAATGAAACTAGCGAAAACTTCCGGGCCAGCGTT 420
||||||| ||||||||||| | ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 352 TGAGACCGTCCGTACGGTTCTCGAGTCGATGAAACTAGCGAAAGCTTCCGGGCCAGCATT 411
Query 421 GGCTTTGGTGGAGTGTATGTTTAAAAACAGGTACTTTGCTCCTTTTGATCTCTGGGGGCG 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 412 GGCTTTGGTGGAGTGTATGTTTAAAAACAGGTACTTTGTTCCTTTTGATCTCTGGGGG-G 470
Query 481 -TTTGA-TTATTGATATCTGTAGTGAAACTGGAAGCCTGGCTGCGTTTCTTAAGGTTTTT 538
||| | |||| ||| ||||| |||||| ||||||| ||||||||||||||||||| |||
Sbjct 471 ATTT-ACTTATCGATGTCTGTCGTGAAAATGGAAGCTTGGCTGCGTTTCTTAAGGTGTTT 529
Query 539 AGGGAAAGTTGTAGAATTGCAGTATATGAGAAGCTTGATTTTATGAAACCGGATTTGGTA 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 530 AGGGAAAGTTGTAGAATTGCAGTAGATGAGAAGCTTGATTTTATGAAACCGGATTTGGTA 589
Query 599 GCTAGTAATGCGGCTCTTGAAGCGTGTTGCCGGCAGTTGGAATCTCTGGCTGATGCTGAA 658
|| |||||||| ||||||||||||||||| ||||| |||||||| |||||||||||| |
Sbjct 590 GCGAGTAATGCAGCTCTTGAAGCGTGTTGTAGGCAGATGGAATCTTTGGCTGATGCTG-A 648
Query 659 G-ATGTGATTGAATCTATGGCTGTGTTGGGTGTGAAGCCTGATGAATTGAGCTTTGGGTT 717
| || ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 649 GAATCTGATTGAATCTATGGATGTTTTAGGTGTGAAGCCTGATGAATTGAGCTTTGGGTT 708
Query 718 TCTTGCTTATTTGTATGCGAGAAAGGGGCTTCGAGAGAAGATAAGTGAGATTGAGAATTC 777
||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||
Sbjct 709 TCTTGCTTATTTGTATGCGAGGAAGGGGCTTCGAGAGAAGATTAGTGAGCTTGAGGATTT 768
Query 778 AATGGATGGTTTTGGGTTTGCAAGTAGAAGAA-TCTTTTATTCTAGTGTGATCAGTGGAT 836
||||||||||| ||||||||||||||||||| || ||||||| ||| ||||||||||||
Sbjct 769 GATGGATGGTTTAGGGTTTGCAAGTAGAAGAATTC-TTTATTCCAGTATGATCAGTGGAT 827
Query 837 ATGTTAAGAGTGGTGATTTAGATAGTGTTTCTGATGTTATACTGCATAGTCTTAAAGGAG 896
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 828 ATGTTAAGAGTGGTGATTTAGATAGTGCTTCTGATGTTATACTGTGTAGTCTTAAAGGAG 887
Query 897 GTGGAGAAGACTCGAGTTTCGGTGAGGAAACGTACTGTGAATTGGTGAAAGGGTTTATAG 956
|||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||||
Sbjct 888 TTGGAGAAGCCTCGAGTTTCAGTGAGGAAACGTACTGTGAATTGGTTAGAGGGTTCATAG 947
Query 957 AGAGTAAAAGCGTTAAGTGTTTAGCCAAACTGATAATCGAAGCTCAGAAGCTT-GAATCT 1015
|||||||||||||| || ||||||| |||||||| ||||||||||||||| || ||||||
Sbjct 948 AGAGTAAAAGCGTTGAGAGTTTAGCGAAACTGATCATCGAAGCTCAGAAG-TTGGAATCT 1006
Query 1016 CTGTCCGTTGACGTTGACGGTTCAATTGGGTTTGGAATCGTAAATGCTTGTGCCAAGCTC 1075
||||| ||| |||| ||| ||| | ||||||||||||||||||||||||| |||||||
Sbjct 1007 ATGTCCACTGATGTTGGCGGATCAGTGGGGTTTGGAATCGTAAATGCTTGTGTCAAGCTC 1066
Query 1076 GGTTTTTCGGGTAAAAGTATTCTCAATGAAATGAATGCTCAGGGAGGATCTGGTGGGATT 1135
|| ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 1067 GGATTTTCGGGTAAAAGTATTCTCGATGAATTGAATGCTCAGGGAGGATCTGGAGGGATT 1126
Query 1136 GGGGTGTATGTGCCGATCTTGAAGGCCTATTGCAAAGAAGGCAGAACAGATGAAGCTACT 1195
|| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1127 GGTGTGTATGTGCCGATCTTGAAGGCTTATTGCAAAGAAGGCAGAACATCTGAAGCTACT 1186
Query 1196 CAGCTGGTTACAGAGATCAGCAGCTCTGGGCTTCAATTAGACGTTGAGACCTATAACACT 1255
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CAGCTTGTTACAGAGATCAGCAGCTCTGGGCTTCAATTAGACGTTGAGACCTATAACACT 1246
Query 1256 ATGATCGAAGCTTCCATGACGAAACAGGATTTCCTATCTGCGCTTACACTGTTTAGGGAT 1315
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 1247 ATGATCGAAGCTTCCATGACGAAACATGATTTCCTATCTGCTCTTACATTGTTTAGGGAT 1306
Query 1316 ATGCGAGAAACAAAAGTATCAGATTTGAAAAGATGCTACTTAACAATAATGACAGGTCTC 1375
||| ||||||||| ||| | ||| |||||||||||||||||||||||||||| ||||||
Sbjct 1307 ATGAGAGAAACAAGAGTGGCGGATCTGAAAAGATGCTACTTAACAATAATGACTGGTCTC 1366
Query 1376 CTTGAGAATCAGAGACCTGAGTTAATGGGAGAGTTTGTGGAGGAAGTTGTGGAAGATCCT 1435
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1367 CTTGAGAATCAGAGACCTGAGTTAATGGCAGAGTTTGTGGAGGAAGTTATGGAAGATCCA 1426
Query 1436 CGCGTAGAAGTGAAGTCCCATGATTGGAATTCGATTATCCATGCCTTCTGCAAATCTGGG 1495
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1427 CGCGTAGAAGTGAAGTCCCATGATTGGAATTCGATTATCCATGCCTTTTGTAAATCTGGT 1486
Query 1496 CGTCTAGAAGATGCAAAGAGTACATTCAGAAGGATGGCTTTCCTTCAGTACGAGCCAAAT 1555
|| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 1487 CGCCTAGGAGATGCAAAGAGTACATTCAGAAGGATGACTTTCCTTCAGTATGAGCCGAAT 1546
Query 1556 AACCAGACATACTTGTCGTTGATCAATGGATATGTGAGCTGCGAGAAGTACTTCGAGGTG 1615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1547 AACCAGACATACTTGTCGTTGATCAATGGATACGTGAGCTGCGAGAAGTACTTCGAGGTG 1606
Query 1616 GTGGTTTTGTGGAAAGAGTTCAAAGACAAGAATGCAAAACTAGAGCATGCTCTTGCAGAT 1675
|||||| | ||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1607 GTGGTTATATGGAAAGAGTTCAAAGACAAGAAAGCAAAACTGGAGCATGCTCTTGCGGAT 1666
Query 1676 GCGTTCTTGAATGCATTAGTCAAAGGAGGGTTCTTTGGCACGGCATTGCAAGTGATAGAG 1735
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1667 GCGTTCTTGAATGCATTGGTCAAAGGAGGCTTCTTTGGCACGGCGTTGCAAGTGATAGAG 1726
Query 1736 AAATGTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTACAAGGCAACGTTCATGGAG 1795
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1727 AAATGTCAGGAGATGAAGATATTCGTGGATAAGTGGAGGTATAAAGCAACGTTCATGGAG 1786
Query 1796 ACTCAGAAGAACCTCAGATTGCCAAAGTTGAGGAAGAGGAAGATAAAGAAAATGGAGTTG 1855
||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1787 ACTCAAAAGAATCTCAGATTGCCAAAGTTGAGGAAGAGGAAGATGAAGAAAATTGAGTTT 1846
Query 1856 CTTGATGCCTTTAAGAACTGGGTTGGTCTTACCACATGA 1894
||||||||||||||||| |||| | || |||||||||||
Sbjct 1847 CTTGATGCCTTTAAGAATTGGGCTCGTATTACCACATGA 1885
> AT1G69290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:26047372-26049348 REVERSE LENGTH=1977
Length=1977
Score = 1764 bits (955), Expect = 0.0
Identities = 1570/1856 (85%), Gaps = 85/1856 (5%)
Strand=Plus/Plus
Query 95 AAAACCCTAACCCCACACCAAAAGTCCTCCTTTGAATCTACTCTCCACCATTCAC-T-AA 152
||||||||||| ||| | ||||| ||||||||||||||||| |||||| |||| | | ||
Sbjct 151 AAAACCCTAACTCCAGATCAAAAATCCTCCTTTGAATCTACCCTCCACGATTC-CTTAAA 209
Query 153 TCACCCACGACACTGATCAAGCATGGAAGGTC-TTCCGATCCT-TCGCCGCCGCTTCTTC 210
| |||| |||| ||| |||||||||||| | || || | || || |||||||||||||
Sbjct 210 T-GCCCATTACACCGATGAAGCATGGAAGG-CTTTTCGGT-CTCTCACCGCCGCTTCTTC 266
Query 211 TCTCCCCGACAAGCGTCTCCTCAATTCTCTCATCACCCACTTGTCCTCCT-TC-CACCAC 268
||| || || ||||||||| ||||||| || || ||||| |||||| | || | |
Sbjct 267 TCTACCGGAGAAGCGTCTCATCAATTCCCTTATTACCCATTTGTCC-GGTGTCGAAGGAA 325
Query 269 GCAGATCAAAACACCTCCCTCAGGCACAGACTCAAGCGTGCCTTTGTTTCCAC-GACTTA 327
|| | | | | | | || || ||||| || || || |||| ||| | | ||||
Sbjct 326 GC-GGTGAGAGTA--T--ATC--TCATAGACTTAAACGAGCTTTTGCTTCTGCTG-CTTA 377
Query 328 CGTCATCGAGAAAGATCCGATTTTGCTTGAGTTTGAGACCATCCGTACGGTTTTGGAGTC 387
|| || |||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 378 TGTAATTGAGAAAGATCCGATTTTGCTTGAGTTTGAGACTGTTCGTACGCTTTTGGAGTC 437
Query 388 AATGAAACTAGCGAAAACTTCCGGGCCAGCGTTGGCTTTGGTGGAGTGTATGTTTAAAAA 447
|||||||| |||||| || | ||||| || |||||||| ||| ||||||||||||||||
Sbjct 438 GATGAAACTTGCGAAAGCTGCAGGGCCTGCTTTGGCTTTAGTGAAGTGTATGTTTAAAAA 497
Query 448 CAGGTACTTTGCTCCTTTTGATCTCTGGGGGCGTTTGATTATTGATATCTGTAGTGAAAC 507
||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 498 CAGGTACTTTGTTCCTTTTGATCTCTGGGGGCATTTGGTTATTGATATCTGTCGTGAAAA 557
Query 508 TGGAAGCCTGGCTGCGTTTCTTAAGGTTTTTAGGGAAAGTTGTAGAATTGCAGTATATGA 567
||||||| ||||| ||||||||||||| |||| |||||||||||||||| | ||| ||||
Sbjct 558 TGGAAGCTTGGCTCCGTTTCTTAAGGTGTTTAAGGAAAGTTGTAGAATTTCTGTAGATGA 617
Query 568 GAAGCTTGATTTTATGAAACCGGATTTGGTAGCTAGTAATGCGGCTCTTGAAGCGTGTTG 627
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 618 GAAGCTTGAGTTTATGAAACCCGATTTGGTAGCTAGTAATGCGGCTCTTGAAGCGTGTTG 677
Query 628 CCGGCAGTTGGAATCTCTGGCTGATGCTGAAGATGTGATTGAATCTATGGCTGTGTTGGG 687
|| ||| |||||||| |||||||||||||| |||||||||||||||||||||| || ||
Sbjct 678 TCGACAGATGGAATCTTTGGCTGATGCTGAAAATGTGATTGAATCTATGGCTGTTTTAGG 737
Query 688 TGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTATTTGTATGCGAGAAAGGGGCT 747
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 738 TGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTATTTGTATGCGAGGAAGGGGCT 797
Query 748 TCGAGAGAAGATAAGTGAGATTGAGAATTCAATGGATGGTTTTGGGTTTGCAAGTAGAAG 807
|||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 798 TCGAGAGAAGATTAGTGAGCTTGAGAATTTGATGGATGGTTTTGGTTTTGCAAGTAGAAG 857
Query 808 AATCTTTTATTCTAGTGTGATCAGTGGATATGTTAAGAGTGGTGATTTAGATAGTGTTTC 867
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AATCCTTTATTCTAATATGATCAGTGGATATGTTAAGAGTGGTGATTTAGATAGTGTTTC 917
Query 868 TGATGTTATACTGCATAGTCTTAAAGGAGGTGGAGAAGACTCGAGTTTCGGTGAGGAAAC 927
|||||||||| ||||||||||||||| ||||||||| || ||||||||| ||| ||||||
Sbjct 918 TGATGTTATATTGCATAGTCTTAAAGAAGGTGGAGAGGAATCGAGTTTCAGTGTGGAAAC 977
Query 928 GTACTGTGAATTGGTGAAAGGGTTTATAGAGAGTAAAAGCGTTAAGTGTTTAGCCAAACT 987
||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 978 GTATTGTGAATTGGTTAAAGGGTTTATAGAGAGTAAAAGCGTTAAGAGTTTAGCGAAAGT 1037
Query 988 GATAATCGAAGCTCAGAAGCTT-GAATC-TCTGTCCGTTGACGTTGACGGTTCAATTGGG 1045
|||| |||||||||||||| || ||||| ||| | ||||| |||||| ||||| |||||
Sbjct 1038 GATACTCGAAGCTCAGAAG-TTGGAATCTTCT-TACGTTGGTGTTGACAGTTCAGTTGGG 1095
Query 1046 TTTGGAATCGTAAATGCTTGTGCCAAGCTCGGTTTTTCGGGT--A--A-A-AGTATTCTC 1099
||||||||| |||||||||||| || || ||||| |||| | | | | |||||||||
Sbjct 1096 TTTGGAATCATAAATGCTTGTGTAAATCTTGGTTTCTCGGATAAAGCACATAGTATTCTC 1155
Query 1100 AATGAAATGAATGCTCA--G-GGAGGATCTGGT-GGGATTGGGGTGTATGTGCCGATCTT 1155
| ||||||| |||||| | ||||||||| || ||||||||||| |||||||| |||||
Sbjct 1156 GAGGAAATGATTGCTCAGGGAGGAGGATCT-GTAGGGATTGGGGTTTATGTGCCAATCTT 1214
Query 1156 GAAGGCCTATTGCAAAGAAG-GCAGAACAGATGAAGCTACTCAGCTGGTTACAGAGATCA 1214
|| || |||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1215 AAAAGCTTATTGCAAAG-AGTACAGAACAGCTGAAGCTACTCAGCTGGTTACAGAGATCA 1273
Query 1215 GCAGCTCTGGGCTTCAATTAGACGTTGAGACCTATAACACTATGATCGAAGCTTCCATGA 1274
||||||||||||||||||||||||| |||| || |||| || ||||||||||||||||||
Sbjct 1274 GCAGCTCTGGGCTTCAATTAGACGTCGAGATCTCTAACGCTTTGATCGAAGCTTCCATGA 1333
Query 1275 CGAAACAGGATTTCCTATCTGCGCTTACACTGTTTAGGGATATGCGAGAAACAAA-AGTA 1333
|||| |||||||| |||||||| ||||| |||||||||||||| |||||| | | |||
Sbjct 1334 CGAATCAGGATTTTATATCTGCGTTTACATTGTTTAGGGATATGAGAGAAA-ATAGAGTG 1392
Query 1334 -TCAGATTTGAAAAG-ATGCTACTTAACAATAATGACAGGTCTCCTTGAGAATCAGAGAC 1391
| |||||||| | | | ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1393 GTG-GATTTGAAGGGGA-GTTACTTAACAATAATGACAGGTCTTCTTGAGAACCAGAGAC 1450
Query 1392 CTGAGTTAATGGGAGAGTTTGTGGAGGAAGTTGTGGAAGATCCTCGCGTAGAAGTGAAGT 1451
|||||||||||| || |||| | || |||||||| ||||| ||||| || |||||||| |
Sbjct 1451 CTGAGTTAATGGCAGCGTTTCTAGACGAAGTTGTTGAAGACCCTCGTGTTGAAGTGAATT 1510
Query 1452 CCCATGATTGGAATTCGATTATCCATGCCTTCTGCAAATCTGGGCGTCTAGAAGATGCAA 1511
|||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct 1511 CCCATGATTGGAATTCGATTATTCATGCCTTTTGTAAATCCGGGCGTCTGGAAGATGCAC 1570
Query 1512 AGAGTACATTCAGAAGGATGGCTTTCCTTCAGT-ACGAGCCAAATAACCAGACATACTTG 1570
||| |||||||||||||||| |||||| | || | |||||||| ||||||||||||||
Sbjct 1571 GGAGGACATTCAGAAGGATGGTTTTCCTAC-GTTATGAGCCAAACAACCAGACATACTTA 1629
Query 1571 TCGTTGATCAATGGATATGTGAGCTGCGAGAAGTACTTCGAGGTGGTGGTTTTGTGGAAA 1630
|| ||||| ||||||||||||||| | || |||||||| | || || | ||||||||
Sbjct 1630 TCTTTGATTAATGGATATGTGAGCGGGGAAAAGTACTTTAACGTCCTGCTCTTGTGGAAC 1689
Query 1631 GAG-TTCAAAGACAAGA-AT-G-C-----A---A-A-AC----T--AGA---G--CATGC 1665
||| || |||| |||| || | | | | | | | ||| | |||||
Sbjct 1690 GAGATT-AAAGGTAAGATATCGTCGGTGGAGGCAGAGAAGAGGTCCAGACTAGATCATGC 1748
Query 1666 TCTTG-CAGATGCGTTCTTGAATGCATTAGTCAAAGGAGGGTTCTTTG--GCA-CGGCAT 1721
||| | | ||||| |||||| | ||||| || |||||||| ||||||| ||| || ||
Sbjct 1749 TCTAGTC-GATGCATTCTTGTACGCATTGGTGAAAGGAGGATTCTTTGATGCAGCG--AT 1805
Query 1722 TGCAAGTGATAGAGAAATGTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTACAAGG 1781
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1806 -GCAAGTGGTAGAGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTATAAG- 1863
Query 1782 CAA-CGTTCATGGAGACTCAGAAGAACCTCAGATTGCCAAAGTTGAGGAAGAGGAAGATA 1840
||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 1864 CAAGCGTTCATGGAGACTCACAAGAAACTCAGATTGCCAAAGCTGAGGAAGAGGAAC-TA 1922
Query 1841 -AAGAAAATGGAGT-TGCTTGATGCCTTTAAGAACTGGGTTGGTCTTACCACATGA 1894
||||||||||| | | |||| |||||| |||||||||| |||||| | |||||||
Sbjct 1923 CAAGAAAATGGAATCT-CTTGTTGCCTTCAAGAACTGGGCTGGTCTCAACACATGA 1977
> AT1G69280.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G03630.1);
Has 885 Blast hits to 474 proteins in 40 species: Archae -
0; Bacteria - 4; Metazoa - 731; Fungi - 9; Plants - 68; Viruses
- 0; Other Eukaryotes - 73 (source: NCBI BLink). | chr1:26045160-26048190
REVERSE LENGTH=2743
Length=2743
Score = 706 bits (382), Expect = 0.0
Identities = 692/833 (83%), Gaps = 55/833 (7%)
Strand=Plus/Plus
Query 1103 GAAATGAATGCTCA--G-GGAGGATCTGGT-GGGATTGGGGTGTATGTGCCGATCTTGAA 1158
||||||| |||||| | ||||||||| || ||||||||||| |||||||| ||||| ||
Sbjct 1 GAAATGATTGCTCAGGGAGGAGGATCT-GTAGGGATTGGGGTTTATGTGCCAATCTTAAA 59
Query 1159 GGCCTATTGCAAAGAAG-GCAGAACAGATGAAGCTACTCAGCTGGTTACAGAGATCAGCA 1217
|| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AGCTTATTGCAAAG-AGTACAGAACAGCTGAAGCTACTCAGCTGGTTACAGAGATCAGCA 118
Query 1218 GCTCTGGGCTTCAATTAGACGTTGAGACCTATAACACTATGATCGAAGCTTCCATGACGA 1277
|||||||||||||||||||||| |||| || |||| || |||||||||||||||||||||
Sbjct 119 GCTCTGGGCTTCAATTAGACGTCGAGATCTCTAACGCTTTGATCGAAGCTTCCATGACGA 178
Query 1278 AACAGGATTTCCTATCTGCGCTTACACTGTTTAGGGATATGCGAGAAACAAA-AGTA-TC 1335
| |||||||| |||||||| ||||| |||||||||||||| |||||| | | ||| |
Sbjct 179 ATCAGGATTTTATATCTGCGTTTACATTGTTTAGGGATATGAGAGAAA-ATAGAGTGGTG 237
Query 1336 AGATTTGAAAAG-ATGCTACTTAACAATAATGACAGGTCTCCTTGAGAATCAGAGACCTG 1394
|||||||| | | | ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 238 -GATTTGAAGGGGA-GTTACTTAACAATAATGACAGGTCTTCTTGAGAACCAGAGACCTG 295
Query 1395 AGTTAATGGGAGAGTTTGTGGAGGAAGTTGTGGAAGATCCTCGCGTAGAAGTGAAGTCCC 1454
||||||||| || |||| | || |||||||| ||||| ||||| || |||||||| ||||
Sbjct 296 AGTTAATGGCAGCGTTTCTAGACGAAGTTGTTGAAGACCCTCGTGTTGAAGTGAATTCCC 355
Query 1455 ATGATTGGAATTCGATTATCCATGCCTTCTGCAAATCTGGGCGTCTAGAAGATGCAAAGA 1514
||||||||||||||||||| |||||||| || ||||| |||||||| ||||||||| ||
Sbjct 356 ATGATTGGAATTCGATTATTCATGCCTTTTGTAAATCCGGGCGTCTGGAAGATGCACGGA 415
Query 1515 GTACATTCAGAAGGATGGCTTTCCTTCAGT-ACGAGCCAAATAACCAGACATACTTGTCG 1573
| |||||||||||||||| |||||| | || | |||||||| |||||||||||||| ||
Sbjct 416 GGACATTCAGAAGGATGGTTTTCCTAC-GTTATGAGCCAAACAACCAGACATACTTATCT 474
Query 1574 TTGATCAATGGATATGTGAGCTGCGAGAAGTACTTCGAGGTGGTGGTTTTGTGGAAAGAG 1633
||||| ||||||||||||||| | || |||||||| | || || | |||||||| |||
Sbjct 475 TTGATTAATGGATATGTGAGCGGGGAAAAGTACTTTAACGTCCTGCTCTTGTGGAACGAG 534
Query 1634 -TTCAAAGACAAGA-AT-G-C-----A---A-A-AC----T--AGA---G--CATGCTCT 1668
|| |||| |||| || | | | | | | | ||| | ||||||||
Sbjct 535 ATT-AAAGGTAAGATATCGTCGGTGGAGGCAGAGAAGAGGTCCAGACTAGATCATGCTCT 593
Query 1669 TG-CAGATGCGTTCTTGAATGCATTAGTCAAAGGAGGGTTCTTTG--GCA-CGGCATTGC 1724
| | ||||| |||||| | ||||| || |||||||| ||||||| ||| || || ||
Sbjct 594 AGTC-GATGCATTCTTGTACGCATTGGTGAAAGGAGGATTCTTTGATGCAGCG--AT-GC 649
Query 1725 AAGTGATAGAGAAATGTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTACAAGGCAA 1784
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 650 AAGTGGTAGAGAAATCTCAGGAGATGAAGATATTTGTGGATAAGTGGAGGTATAAG-CAA 708
Query 1785 -CGTTCATGGAGACTCAGAAGAACCTCAGATTGCCAAAGTTGAGGAAGAGGAAGATA-AA 1842
|||||||||||||||| ||||| ||||||||||||||| ||||||||||||| || ||
Sbjct 709 GCGTTCATGGAGACTCACAAGAAACTCAGATTGCCAAAGCTGAGGAAGAGGAAC-TACAA 767
Query 1843 GAAAATGGAGT-TGCTTGATGCCTTTAAGAACTGGGTTGGTCTTACCACATGA 1894
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Sbjct 768 GAAAATGGAATCT-CTTGTTGCCTTCAAGAACTGGGCTGGTCTCAACACATGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93774618060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5