BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476029
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein... 1895 0.0
AT5G38860.1 | Symbols: BIM3 | BES1-interacting Myc-like protein... 97.1 3e-19
> AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein
2 | chr1:25941675-25943836 FORWARD LENGTH=1302
Length=1302
Score = 1895 bits (1026), Expect = 0.0
Identities = 1132/1183 (96%), Gaps = 7/1183 (1%)
Strand=Plus/Plus
Query 1 AAACTCTCCGGCGAAGATGAGAACCGGAAAAGGAAATCAAGAGGAAGAAGATTACGGAGA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AAATTCTCCGGCGAAGATGAGAACCGGAAAAGGAAATCAAGAGGAAGAAGATTACGGAGA 173
Query 61 AGAAGACTTTAGCTCGAAACGTGAAGGTCCTTCTTCCAACACTACTGTTCATAGCAACAC 120
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AGAAGACTTTAACTCTAAACGTGAAGGTCCTTCTTCCAACACTACTGTTCATAGCAACAG 233
Query 121 AGATTCAAAGGAAAATGATAAAGCTAGTGCGATACGTTCGAAACATTCGGTCACTGAGCA 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 AGATTCAAAGGAAAATGATAAAGCTAGTGCGATACGTTCTAAACATTCGGTCACTGAGCA 293
Query 181 ACGGAGAAGAAGCAAAATCAATGAAAGATTTCAGATATTGAGAGAACTGATTCCCAACAG 240
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 294 ACGTAGAAGAAGCAAAATCAATGAAAGATTTCAGATATTGAGAGAACTAATTCCCAACAG 353
Query 241 TGAACAGAAAA-GAGATACTGCTTCCTTCCTTTTAGAGGTGATAGATTATGTTCAGTATT 299
|||||| |||| | || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 354 TGAACA-AAAACGTGACACTGCTTCATTCCTTTTAGAGGTGATAGATTATGTTCAGTATT 412
Query 300 TACAAGAGAAGGTGCAAAAGTATGAAGGATCGTATCCAGGATGGAGTCAGGAACCAACAA 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 TACAAGAGAAGGTGCAAAAGTATGAAGGATCGTATCCAGGTTGGAGTCAGGAACCAACAA 472
Query 360 AGTTGACGCCATGGAGGAATAATCATTGGCGAGTTCAAAGTTTGGGGAATCATCCAGTAG 419
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 473 AGTTGACGCCATGGAGGAATAATCATTGGCGAGTTCAAAGTTTGGGGAACCACCCAGTAG 532
Query 420 CTATAAATAATGGATCTGGTTCAGGGATACCTTTTCCTGGAAAGTTTGAAGAAAACACTG 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 533 CTATAAATAATGGATCTGGTCCAGGGATACCTTTTCCTGGAAAGTTTGAAGACAACACTG 592
Query 480 TGACTTCGACACCTGCAATTGTTGCAGAACCGCAAATCCCGATTGAATCTGACAAAGGAA 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 593 TGACTTCGACACCTGCAATTATTGCAGAACCGCAAATCCCGATTGAATCTGACAAAGCAA 652
Query 540 GAGCTACAACCGGCATATCGATTGAAAGTCAACCTGAGTTAGACAACAAAGGATTACCAC 599
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 GAGCTATAACCGGCATATCGATTGAAAGTCAACCTGAGTTAGACGACAAAGGATTACCAC 712
Query 600 CACTACAACCAATTCTTCCAATGGTACAAGGCGAACAAGCTAATGAATGTCCTGCAACTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CACTACAACCAATTCTTCCAATGGTACAAGGCGAACAAGCTAATGAATGTCCTGCAACTA 772
Query 660 GTGATGGGCTAGGCCAAATTAATGACCTGGTTATTGAAGGTGGAACCATTAGCATCTCTA 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTGATGGGCTAGGCCAAAGTAATGACCTGGTTATTGAAGGTGGAACCATTAGCATCTCTA 832
Query 720 GTGCCTACTCGCATGAGTTATTGAGCTCATTAACACAAGCTCTCCAGAACGCAGGAATCG 779
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |
Sbjct 833 GTGCCTACTCGCATGAGTTATTGAGCTCATTAACACAAGCACTCCAGAATGCAGGCATTG 892
Query 780 ATCTGTCGCATGCAAAACTTTCTGTGCAGATTGATCTTGGGAAACGAGCCAATCAAGGAC 839
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 893 ATCTGTCGCAAGCAAAGCTTTCTGTGCAGATCGATCTTGGGAAGCGAGCCAATCAAGGTC 952
Query 840 TAACTCATGACGAGCCATCAAGTAAGAATCCATTGTCATCTGATACGCAAGCAAGGGATC 899
|||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 953 TAACTCATGAAGAGCCATCAAGTAAGAATCCATTATCATATGATACGCAAGGAAGGGATT 1012
Query 900 CAAGCGTCGACGAAGAATCTGAACATTCTCACAAGCGGATGAAAACACTGTGACATTTCT 959
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CAAGCGTTGAGGAAGAATCTGAACATTCTCACAAGCGGATGAAAACACTGTGACATTTCT 1072
Query 960 CTCTCAGGCTCCACCGCTTTGGAATATATAAATGTATTGACAGATTCCTTCTATCGTGTA 1019
|||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1073 CTCTCAGGCTCCACGGCGCTGGAATATATAAATGTATTGACAGATTCCTTGTATCGTGTA 1132
Query 1020 CATTGTTCGGCTTCTAGGGGCTTCCTATAGT-C--GTTAAGATAAACTTTGGTTAGTAGA 1076
|||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1133 CATTGTTCGGCTTCTAGGGG-TTCCTATAGTACTCGTTAAGATAAACTTTGGTTAGTAGA 1191
Query 1077 TTCTACGTTTTTT-GTGGTACTGAGTTTGTATCATCTTCTGCATCATTCATGTAACCTAT 1135
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TTCTGCGTTTTTTTGTGGTTCTGAGTTTGTATCATCTTCTGCATCATTCATGTAACCTAT 1251
Query 1136 CAAATATAATCTCTTGTGGTTTCAAGTTATTGCATTATTTTTT 1178
||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1252 CAAATATGATCTCTTGTGGTTTCAAGTTATTGCATCATTTTTT 1294
> AT5G38860.1 | Symbols: BIM3 | BES1-interacting Myc-like protein
3 | chr5:15558956-15561126 FORWARD LENGTH=1239
Length=1239
Score = 97.1 bits (52), Expect = 3e-19
Identities = 140/180 (78%), Gaps = 16/180 (9%)
Strand=Plus/Plus
Query 158 TCGAAACATTCGGTCACTGAGCAACGGAGAAGAAGCAAAATCAATGAAAGATTTCAGA-T 216
|||||||| || | ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 233 TCGAAACACTCAGAGACTGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGT 292
Query 217 ATTGA-GAGA-ACTGATTCC-CA-A--CAG--TGAACAGAAAAGAGATACTGCTTCCTTC 268
|| | | || | | || || || | ||| ||| |||||| |||||| ||||| |||
Sbjct 293 -TTAATG-GATATT-ATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTC 349
Query 269 CTT-TTAGAGGTGATAGATTATGTTCAGTAT-TTACAAGAGAAGGTGCAAAAGTATGAAG 326
|| || ||||| ||||| ||| |||| | | || ||||| || || || | ||||||||
Sbjct 350 -TTGTTGGAGGTTATAGAGTATATTCACTTTCTT-CAAGAAAAAGTTCACATGTATGAAG 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5