BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476034
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69050.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 604 2e-172
> AT1G69050.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:25961924-25962348 FORWARD LENGTH=425
Length=425
Score = 604 bits (327), Expect = 2e-172
Identities = 408/443 (92%), Gaps = 21/443 (5%)
Strand=Plus/Plus
Query 1 CACACACAAAACAAGACTTGATACATTATCAGTTTGTATCAAGAATCAAGAACCAAGAAT 60
||||||||||||||||||||||||| | | | | ||||||||| |||||| |||||||
Sbjct 1 CACACACAAAACAAGACTTGATACA-T-T-A---T-TATCAAGAAGCAAGAAGCAAGAAT 53
Query 61 GGAGGATTCAGGGCGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 GGAGGATTCAGGACGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA 113
Query 121 CGATTGCGTTTTCCGGCGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 CGATTGCGTTTTCCGACGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT 173
Query 181 TCTCTTACCACCAAGACCTCCTCCTTCTGCGGAGGCTCCTTCTACTACGACCA-ACGTTT 239
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 174 TCTCTTACCACCAAGACCTCCTCCTTCAGCGGAGGCTCCTTCTACTACGA-CAGGTGTTT 232
Query 240 CTGCGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CTACGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC 292
Query 300 TTCCTTCAATGCTTCAACCTAATCCAACCACCACCTCTCACTAAttcttttttctctttc 359
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 293 TTCCTTCGATGCTTCAACCTAATCCAACCACCACCTCTCACTAATTCTTCTTT-TGT--C 349
Query 360 cattttttaggttccttcttctttcttctgtaatgactattttggaact-ttttttA-AT 417
| || ||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 350 --T-----AGATTCCTTCTTCTTTCTTCTGTAATGACTATTTTGAAACTCTTTTTTTTAT 402
Query 418 TGAAATTTTCAACATATTAACGT 440
|||||||||||||||||||||||
Sbjct 403 TGAAATTTTCAACATATTAACGT 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20911383584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5