BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476034 Length=440 Score E Sequences producing significant alignments: (Bits) Value AT1G69050.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 604 2e-172 > AT1G69050.1 | Symbols: | unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25961924-25962348 FORWARD LENGTH=425 Length=425 Score = 604 bits (327), Expect = 2e-172 Identities = 408/443 (92%), Gaps = 21/443 (5%) Strand=Plus/Plus Query 1 CACACACAAAACAAGACTTGATACATTATCAGTTTGTATCAAGAATCAAGAACCAAGAAT 60 ||||||||||||||||||||||||| | | | | ||||||||| |||||| ||||||| Sbjct 1 CACACACAAAACAAGACTTGATACA-T-T-A---T-TATCAAGAAGCAAGAAGCAAGAAT 53 Query 61 GGAGGATTCAGGGCGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA 120 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 GGAGGATTCAGGACGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA 113 Query 121 CGATTGCGTTTTCCGGCGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 CGATTGCGTTTTCCGACGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT 173 Query 181 TCTCTTACCACCAAGACCTCCTCCTTCTGCGGAGGCTCCTTCTACTACGACCA-ACGTTT 239 ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| Sbjct 174 TCTCTTACCACCAAGACCTCCTCCTTCAGCGGAGGCTCCTTCTACTACGA-CAGGTGTTT 232 Query 240 CTGCGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC 299 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 CTACGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC 292 Query 300 TTCCTTCAATGCTTCAACCTAATCCAACCACCACCTCTCACTAAttcttttttctctttc 359 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | | | Sbjct 293 TTCCTTCGATGCTTCAACCTAATCCAACCACCACCTCTCACTAATTCTTCTTT-TGT--C 349 Query 360 cattttttaggttccttcttctttcttctgtaatgactattttggaact-ttttttA-AT 417 | || ||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 350 --T-----AGATTCCTTCTTCTTTCTTCTGTAATGACTATTTTGAAACTCTTTTTTTTAT 402 Query 418 TGAAATTTTCAACATATTAACGT 440 ||||||||||||||||||||||| Sbjct 403 TGAAATTTTCAACATATTAACGT 425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20911383584 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5