BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476035 Length=2276 Score E Sequences producing significant alignments: (Bits) Value AT1G69060.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 3208 0.0 AT1G69070.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 207 3e-52 > AT1G69060.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:25964468-25967450 FORWARD LENGTH=2309 Length=2309 Score = 3208 bits (1737), Expect = 0.0 Identities = 2149/2334 (92%), Gaps = 83/2334 (4%) Strand=Plus/Plus Query 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAATCTCTCAATCATCTTCTTCTT-TTC 59 ||||||||||||||||||||||||||||||||||||||||| || |||||||||| || Sbjct 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAATCTCTC--TCTTCTTCTTCTTCTTT 58 Query 60 TCCCAAAGTGATTT-T--G--TGTTCCTTTTT-TCCCCTCAAACCCAAAAATTAGGCTTC 113 || | || | ||| | | || ||||| | ||||||||||| |||||||| ||| Sbjct 59 TCACGAA-T--TTTCTCCGAAACTTGGTTTTTAT-TCCTCAAACCCATAAATTAGGGTTC 114 Query 114 AGTTTTTAAGCCTCCG---TCTTCGTCTTCCGTCGTCGTTGTCGAGAGAGGGTGGTTTTA 170 |||||||||||||||| ||||| |||||||||||||| ||||| | | |||||||||| Sbjct 115 AGTTTTTAAGCCTCCGTCTTCTTCTTCTTCCGTCGTCGTAGTCGA-A-A-GGTGGTTTTA 171 Query 171 GCTATATGGATA---TCT--T-C--A-ACTC--CAAAACGGATGC--T------TTG--- 208 |||||||||||| ||| | | | |||| |||||||||||| | ||| Sbjct 172 GCTATATGGATATCTTCTACTGCAAATACTCTTCAAAACGGATGCTTTGAAGCCTTGATA 231 Query 209 -----TTCATGCGTTCTATGTATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 263 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 232 CTAATTTCATGCGTTCTATATATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 291 Query 264 TTAGATCACGTTCTTGGAATAGAATGCCAACCAAAAGATGCAGTGCAAATGGCATAATGG 323 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 292 TTAGATCACGTTCTTGGAATAGAATGCCAACTAAAAGATGCAGTGCAAATGGCATAATGG 351 Query 324 AAGAGTTTATTTTGGTAGATGATGATGAGGTTATCATTCTTGATTTTCCTGAGTCATCAA 383 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 352 AAGAGTTTATTCTGGTAGATGATGATGATGTTATCATTCTTGATTTTCCTGAGTCATCTA 411 Query 384 AATC-TAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCTATTTTGCCGAGAGTGATT 442 || | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 412 AA-CGGAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCCATTATGCCGAGAGTGATT 470 Query 443 AGCATTGACGATGATGATGATGAGACAGAAAATATTCAGAAAGCTGGGAGTAGTTCAAGC 502 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 471 AGCATTGACGATGATGATGATGAGACAGAAAATGTTCAGAAAGCTGGGAGTAGTTCAAGC 530 Query 503 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAAGAAAAG 562 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 531 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAGGAGAAG 590 Query 563 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCTCCTC-TGG 621 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 591 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCT-CTCATGG 649 Query 622 AATTCGATTTGGTTTAGGCTCTGATACTGACAGTGACTTTTCCGAGAGTGACTGTTCTGA 681 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 650 TATTCGATTTGGTTTAGGCTCTGATACTTATAGTGACTTTTCCGAGAGTGACTGTTCTGA 709 Query 682 TTGTGAGATTTTAGAAGGGTCTCATAGAGAGGTCCGCGAGCAGTGGGAACAAGCAGCTCT 741 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 710 TTGTGAGATTTTAGAAGGGTCTCATAGAGATGTCCGCGAGCAGTGGGAACAAGCAGCTCT 769 Query 742 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTCTGAGTGAGGAGGCTGGTCCTTCAAA 801 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 770 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTTTGAGTGAGGAGGCTGGTCCTTCGAA 829 Query 802 TCTCCACAGTGACACTAGTTTCAG-GCCTGGTTTTG---GAAGAACTGAACAAAATGATC 857 ||||||| ||||||||| |||| | ||||||||||| | |||||||||||| |||||| Sbjct 830 TCTCCACTGTGACACTAATTTC-GAGCCTGGTTTTGAAAGGAGAACTGAACAACATGATC 888 Query 858 AAACATCTTTCTTCTTTGCTGCAAGAACTCCAGATGGTGGAAAAGCTGGTCTGAGTGAGG 917 |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 889 AAACGTCTTTCTTCTTTGCTGCAAGAAATCCAGATGGTGGAAAAGCTGGTCTGACTGAGG 948 Query 918 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGATCTGGTTTTGAAAGTAGAA 977 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 949 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGACCTGGTTTTGAAAGTAGAA 1008 Query 978 CTGAACAACATGATCAAACATCTTTCTTCTTTGCTGCAAGTAATCCAGATGGGGAAAAAG 1037 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 1009 CTGAACAACATGATCAAACATCTTTCTTCTTTACTGCAAGTAATCCAGATGGTGAAAAAG 1068 Query 1038 AAACCTCTTCTACTTTCTTTGGAACCGATGGTAGAATTCCTGATATGGCGACTTACTTTG 1097 ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||| Sbjct 1069 AAACCTCTTCTACTTTCTTTGGAGCCGATGGTAGAATCCCTGATATGACGACTTATTTTG 1128 Query 1098 GCTCGGTAATGGAGGAAGACAGCCGAGCTAAACACTCTGCTAATTCTAGtttttttAATA 1157 ||||||||||||||||||||| || |||||||||| |||||||||||| ||||| | || Sbjct 1129 GCTCGGTAATGGAGGAAGACAACCAAGCTAAACACACTGCTAATTCTACTTTTTCCAGTA 1188 Query 1158 AAGAGGATTTTCGGGGGCCTTCTCCACTGTCACCCGAAATACAAGCTGAACATGAAAGGT 1217 |||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| Sbjct 1189 AAGAGGATTTTCGGGGGCCTTCCCCACTGTCACCCGGAATACGAGTTGAACATGAAAGGT 1248 Query 1218 TTGATACACCATCATCTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTCA 1277 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1249 TTGATACACCACCAACTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTTA 1308 Query 1278 AAAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACAGTCACCCG 1337 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1309 AGAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACTGTCACCCG 1368 Query 1338 AAGAGAACCAAACGAAAAATGCT-GCGTATCAGTCTTATACCAAGGAAGTTGAA-AATGA 1395 ||||||| |||| ||||| | | |||||||||||||||||||||||||||||| || || Sbjct 1369 AAGAGAATCAAAATAAAAACG-TCGCGTATCAGTCTTATACCAAGGAAGTTGAAGAA-GA 1426 Query 1396 AGAAGACGCCTCAAAATTTTCTCCGCCAGAGACTTCTGATGGGGATGGAGATAAAACGCA 1455 ||||||||| |||||||| ||||||||| |||||||| |||| ||||||||| |||||| Sbjct 1427 AGAAGACGCATCAAAATTGTCTCCGCCACAGACTTCTAATGGATATGGAGATACAACGCA 1486 Query 1456 TGTGCTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGGATCTCGAGTTTAGATGA 1515 |||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 1487 TGTGTTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGCA--T-AAGTTTAGATGA 1543 Query 1516 ATCAAGAGAACCGATCATTGATCCGATTCCATCTACAAGTGGACAAATGCAAGGTAGTAA 1575 |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| Sbjct 1544 ATCAAGAGAACCGATCATTGATCCTATTCCATCTACCAGTGGACAAGTGCAAGGTACTAA 1603 Query 1576 TTGTACAGCTCCTGCAATCGATGTCATGCTTAACAGAGAGATGTTGAAGGAGACTGATGA 1635 | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1604 TGGTACAGCTCCTGCAATTGATGTCATGCTTAACAGAGAGATATTGAAGGAGACTGATGA 1663 Query 1636 ATACAAGAAAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1695 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1664 ATACAAGAGAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1723 Query 1696 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACACGCGACAGTTGGagat 1755 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1724 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACATGCGAAAGTTGGAGAT 1783 Query 1756 ggaaagaaggcaaaaagagagggtagaggaagtgagagagacacagaagaaggatgaaga 1815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1784 GGAAAGAAGGCAAAAAGAGAGGGTAGAGGAAGTGAGAGAGACACAGAAGAAGGATGAAGA 1843 Query 1816 aagCATGAACATGAAGGAGAAAGTCCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1875 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1844 AAACATGAACATGAAGGAGAAAGTTCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1903 Query 1876 ACTCAAGAGCTTTAACATGGCATCGTTGCTTCGAGGCTTAGGGATTCAAGTTGTTGGTGG 1935 ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1904 ACTCAAGAGTTTTAACATGGCAGCGTTGCTTCGAGGCTTAGGGATTCAAGTTGGTGGTGG 1963 Query 1936 AATATCTCCTCTGCCACATGAGGTACACGCAGCATACAAACGAGCCGTATTGAAATTTCA 1995 |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1964 AATATCTCCTCTGCCAAATGAGGTACACGCGGCATACAAACGAGCAGTATTGAAATTTCA 2023 Query 1996 TCCTGATAGAGCATCAAGAGGTG---ACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2052 ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2024 TCCGGACAGAGCATCAAGAGGTGGTGACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2083 Query 2053 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCACTAACATTGACCAAA 2112 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2084 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCCCTAACATTGACC--- 2140 Query 2113 GACGTTTTATGATAATCttttttt--------GAATTTCTTAGAAGGGATGTAAATAGTT 2164 ||| |||| | ||||||||||| ||||||||||||| |||||||||||| Sbjct 2141 --CGTATTATCAAAATCTTTTTTTTTTTTTTTGAATTTCTTAGAAT--ATGTAAATAGTT 2196 Query 2165 TTTT-GATTATCCAACAA-AATACAAAATTGTGTTGGTAGGTTTTAAACAAGGGAAAAAT 2222 |||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 2197 TTTTTGATTATCCAACAGGAA-ACAAAATTGTGTTGGTAGGTTTTAAAGAAGGGAAAAAT 2255 Query 2223 AGAACAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2276 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2256 AGAAGAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2309 > AT1G69070.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). | chr1:25967312-25971389 REVERSE LENGTH=2815 Length=2815 Score = 207 bits (112), Expect = 3e-52 Identities = 133/142 (94%), Gaps = 5/142 (4%) Strand=Plus/Minus Query 2137 GAATTTCTTAGAAGGGATGTAAATAG-TTTTTTGATTATCCAACA-AAATACAAAATTGT 2194 ||||||||||||| |||||||||| |||||||||||||||||| || |||||||||| Sbjct 2815 GAATTTCTTAGAA--TATGTAAATAGTTTTTTTGATTATCCAACAGGAA-ACAAAATTGT 2759 Query 2195 GTTGGTAGGTTTTAAACAAGGGAAAAATAGAACAAACACAGTGGTAATGGTATCAACGTC 2254 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2758 GTTGGTAGGTTTTAAAGAAGGGAAAAATAGAAGAAACACAGTGGTAATGGTATCAACGTC 2699 Query 2255 TTCTCTTCTTGCCTTTGCCTTT 2276 |||||||||||||||||||||| Sbjct 2698 TTCTCTTCTTGCCTTTGCCTTT 2677 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112951226250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5