BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476035
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69060.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 3208 0.0
AT1G69070.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 207 3e-52
> AT1G69060.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:25964468-25967450 FORWARD LENGTH=2309
Length=2309
Score = 3208 bits (1737), Expect = 0.0
Identities = 2149/2334 (92%), Gaps = 83/2334 (4%)
Strand=Plus/Plus
Query 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAATCTCTCAATCATCTTCTTCTT-TTC 59
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAATCTCTC--TCTTCTTCTTCTTCTTT 58
Query 60 TCCCAAAGTGATTT-T--G--TGTTCCTTTTT-TCCCCTCAAACCCAAAAATTAGGCTTC 113
|| | || | ||| | | || ||||| | ||||||||||| |||||||| |||
Sbjct 59 TCACGAA-T--TTTCTCCGAAACTTGGTTTTTAT-TCCTCAAACCCATAAATTAGGGTTC 114
Query 114 AGTTTTTAAGCCTCCG---TCTTCGTCTTCCGTCGTCGTTGTCGAGAGAGGGTGGTTTTA 170
|||||||||||||||| ||||| |||||||||||||| ||||| | | ||||||||||
Sbjct 115 AGTTTTTAAGCCTCCGTCTTCTTCTTCTTCCGTCGTCGTAGTCGA-A-A-GGTGGTTTTA 171
Query 171 GCTATATGGATA---TCT--T-C--A-ACTC--CAAAACGGATGC--T------TTG--- 208
|||||||||||| ||| | | | |||| |||||||||||| | |||
Sbjct 172 GCTATATGGATATCTTCTACTGCAAATACTCTTCAAAACGGATGCTTTGAAGCCTTGATA 231
Query 209 -----TTCATGCGTTCTATGTATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 263
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CTAATTTCATGCGTTCTATATATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 291
Query 264 TTAGATCACGTTCTTGGAATAGAATGCCAACCAAAAGATGCAGTGCAAATGGCATAATGG 323
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 292 TTAGATCACGTTCTTGGAATAGAATGCCAACTAAAAGATGCAGTGCAAATGGCATAATGG 351
Query 324 AAGAGTTTATTTTGGTAGATGATGATGAGGTTATCATTCTTGATTTTCCTGAGTCATCAA 383
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 352 AAGAGTTTATTCTGGTAGATGATGATGATGTTATCATTCTTGATTTTCCTGAGTCATCTA 411
Query 384 AATC-TAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCTATTTTGCCGAGAGTGATT 442
|| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 412 AA-CGGAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCCATTATGCCGAGAGTGATT 470
Query 443 AGCATTGACGATGATGATGATGAGACAGAAAATATTCAGAAAGCTGGGAGTAGTTCAAGC 502
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 471 AGCATTGACGATGATGATGATGAGACAGAAAATGTTCAGAAAGCTGGGAGTAGTTCAAGC 530
Query 503 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAAGAAAAG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 531 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAGGAGAAG 590
Query 563 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCTCCTC-TGG 621
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 591 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCT-CTCATGG 649
Query 622 AATTCGATTTGGTTTAGGCTCTGATACTGACAGTGACTTTTCCGAGAGTGACTGTTCTGA 681
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 650 TATTCGATTTGGTTTAGGCTCTGATACTTATAGTGACTTTTCCGAGAGTGACTGTTCTGA 709
Query 682 TTGTGAGATTTTAGAAGGGTCTCATAGAGAGGTCCGCGAGCAGTGGGAACAAGCAGCTCT 741
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 710 TTGTGAGATTTTAGAAGGGTCTCATAGAGATGTCCGCGAGCAGTGGGAACAAGCAGCTCT 769
Query 742 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTCTGAGTGAGGAGGCTGGTCCTTCAAA 801
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 770 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTTTGAGTGAGGAGGCTGGTCCTTCGAA 829
Query 802 TCTCCACAGTGACACTAGTTTCAG-GCCTGGTTTTG---GAAGAACTGAACAAAATGATC 857
||||||| ||||||||| |||| | ||||||||||| | |||||||||||| ||||||
Sbjct 830 TCTCCACTGTGACACTAATTTC-GAGCCTGGTTTTGAAAGGAGAACTGAACAACATGATC 888
Query 858 AAACATCTTTCTTCTTTGCTGCAAGAACTCCAGATGGTGGAAAAGCTGGTCTGAGTGAGG 917
|||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 889 AAACGTCTTTCTTCTTTGCTGCAAGAAATCCAGATGGTGGAAAAGCTGGTCTGACTGAGG 948
Query 918 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGATCTGGTTTTGAAAGTAGAA 977
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 949 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGACCTGGTTTTGAAAGTAGAA 1008
Query 978 CTGAACAACATGATCAAACATCTTTCTTCTTTGCTGCAAGTAATCCAGATGGGGAAAAAG 1037
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1009 CTGAACAACATGATCAAACATCTTTCTTCTTTACTGCAAGTAATCCAGATGGTGAAAAAG 1068
Query 1038 AAACCTCTTCTACTTTCTTTGGAACCGATGGTAGAATTCCTGATATGGCGACTTACTTTG 1097
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||
Sbjct 1069 AAACCTCTTCTACTTTCTTTGGAGCCGATGGTAGAATCCCTGATATGACGACTTATTTTG 1128
Query 1098 GCTCGGTAATGGAGGAAGACAGCCGAGCTAAACACTCTGCTAATTCTAGtttttttAATA 1157
||||||||||||||||||||| || |||||||||| |||||||||||| ||||| | ||
Sbjct 1129 GCTCGGTAATGGAGGAAGACAACCAAGCTAAACACACTGCTAATTCTACTTTTTCCAGTA 1188
Query 1158 AAGAGGATTTTCGGGGGCCTTCTCCACTGTCACCCGAAATACAAGCTGAACATGAAAGGT 1217
|||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||
Sbjct 1189 AAGAGGATTTTCGGGGGCCTTCCCCACTGTCACCCGGAATACGAGTTGAACATGAAAGGT 1248
Query 1218 TTGATACACCATCATCTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTCA 1277
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1249 TTGATACACCACCAACTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTTA 1308
Query 1278 AAAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACAGTCACCCG 1337
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1309 AGAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACTGTCACCCG 1368
Query 1338 AAGAGAACCAAACGAAAAATGCT-GCGTATCAGTCTTATACCAAGGAAGTTGAA-AATGA 1395
||||||| |||| ||||| | | |||||||||||||||||||||||||||||| || ||
Sbjct 1369 AAGAGAATCAAAATAAAAACG-TCGCGTATCAGTCTTATACCAAGGAAGTTGAAGAA-GA 1426
Query 1396 AGAAGACGCCTCAAAATTTTCTCCGCCAGAGACTTCTGATGGGGATGGAGATAAAACGCA 1455
||||||||| |||||||| ||||||||| |||||||| |||| ||||||||| ||||||
Sbjct 1427 AGAAGACGCATCAAAATTGTCTCCGCCACAGACTTCTAATGGATATGGAGATACAACGCA 1486
Query 1456 TGTGCTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGGATCTCGAGTTTAGATGA 1515
|||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1487 TGTGTTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGCA--T-AAGTTTAGATGA 1543
Query 1516 ATCAAGAGAACCGATCATTGATCCGATTCCATCTACAAGTGGACAAATGCAAGGTAGTAA 1575
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||
Sbjct 1544 ATCAAGAGAACCGATCATTGATCCTATTCCATCTACCAGTGGACAAGTGCAAGGTACTAA 1603
Query 1576 TTGTACAGCTCCTGCAATCGATGTCATGCTTAACAGAGAGATGTTGAAGGAGACTGATGA 1635
| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1604 TGGTACAGCTCCTGCAATTGATGTCATGCTTAACAGAGAGATATTGAAGGAGACTGATGA 1663
Query 1636 ATACAAGAAAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1695
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 ATACAAGAGAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1723
Query 1696 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACACGCGACAGTTGGagat 1755
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1724 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACATGCGAAAGTTGGAGAT 1783
Query 1756 ggaaagaaggcaaaaagagagggtagaggaagtgagagagacacagaagaaggatgaaga 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 GGAAAGAAGGCAAAAAGAGAGGGTAGAGGAAGTGAGAGAGACACAGAAGAAGGATGAAGA 1843
Query 1816 aagCATGAACATGAAGGAGAAAGTCCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1875
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1844 AAACATGAACATGAAGGAGAAAGTTCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1903
Query 1876 ACTCAAGAGCTTTAACATGGCATCGTTGCTTCGAGGCTTAGGGATTCAAGTTGTTGGTGG 1935
||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1904 ACTCAAGAGTTTTAACATGGCAGCGTTGCTTCGAGGCTTAGGGATTCAAGTTGGTGGTGG 1963
Query 1936 AATATCTCCTCTGCCACATGAGGTACACGCAGCATACAAACGAGCCGTATTGAAATTTCA 1995
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1964 AATATCTCCTCTGCCAAATGAGGTACACGCGGCATACAAACGAGCAGTATTGAAATTTCA 2023
Query 1996 TCCTGATAGAGCATCAAGAGGTG---ACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2052
||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2024 TCCGGACAGAGCATCAAGAGGTGGTGACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2083
Query 2053 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCACTAACATTGACCAAA 2112
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2084 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCCCTAACATTGACC--- 2140
Query 2113 GACGTTTTATGATAATCttttttt--------GAATTTCTTAGAAGGGATGTAAATAGTT 2164
||| |||| | ||||||||||| ||||||||||||| ||||||||||||
Sbjct 2141 --CGTATTATCAAAATCTTTTTTTTTTTTTTTGAATTTCTTAGAAT--ATGTAAATAGTT 2196
Query 2165 TTTT-GATTATCCAACAA-AATACAAAATTGTGTTGGTAGGTTTTAAACAAGGGAAAAAT 2222
|||| |||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 2197 TTTTTGATTATCCAACAGGAA-ACAAAATTGTGTTGGTAGGTTTTAAAGAAGGGAAAAAT 2255
Query 2223 AGAACAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2276
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 AGAAGAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2309
> AT1G69070.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363; Bacteria
- 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912;
Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink).
| chr1:25967312-25971389 REVERSE LENGTH=2815
Length=2815
Score = 207 bits (112), Expect = 3e-52
Identities = 133/142 (94%), Gaps = 5/142 (4%)
Strand=Plus/Minus
Query 2137 GAATTTCTTAGAAGGGATGTAAATAG-TTTTTTGATTATCCAACA-AAATACAAAATTGT 2194
||||||||||||| |||||||||| |||||||||||||||||| || ||||||||||
Sbjct 2815 GAATTTCTTAGAA--TATGTAAATAGTTTTTTTGATTATCCAACAGGAA-ACAAAATTGT 2759
Query 2195 GTTGGTAGGTTTTAAACAAGGGAAAAATAGAACAAACACAGTGGTAATGGTATCAACGTC 2254
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2758 GTTGGTAGGTTTTAAAGAAGGGAAAAATAGAAGAAACACAGTGGTAATGGTATCAACGTC 2699
Query 2255 TTCTCTTCTTGCCTTTGCCTTT 2276
||||||||||||||||||||||
Sbjct 2698 TTCTCTTCTTGCCTTTGCCTTT 2677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112951226250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5