BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476038
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69080.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1214 0.0
> AT1G69080.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr1:25971949-25973271 REVERSE LENGTH=883
Length=883
Score = 1214 bits (657), Expect = 0.0
Identities = 711/738 (96%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 1 agagagagagagagaAAGAATGGGAAAGAAAGGAGAAGGGTTCTTTCTGAGCAGAATAAG 60
||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 10 AGAGAGAGAGAAAGAAAGTATGGGAAAGAAAGGAGAAGGGTTCTTTGTGAGCAGATTAAG 69
Query 61 GGCTAATGTAAGAGTCCAACCACCGACAACTACGAGCCAGCATGGCTGCAGCCACGAGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GGCTAATGTAAGAGTCCAACCACCGACAACTACGAGCCAGCATGGCTGCAGCCACGAGCC 129
Query 121 ACAAACCACCTCCATAGGGATAAAAGGAAGAAGAATAATGGTTGTGGTTGATTCTTGCTC 180
|| ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 130 ACCAACTACCTCCATAGAGATAAAAGGAAGAAGAATAATTGTTGTGGTTGATTCTTGCTC 189
Query 181 GGAGGCTAAGAACGCTTTGCTTTGGACACTCTCGCATTGTGCTCAGCCTCAAGATTCCAT 240
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 190 GGAGGCTAAAAACGCTTTGCTTTGGACACTCTCACATTGTGCTCAGCCTCAAGATTCCAT 249
Query 241 TCTTCTTCTCCATTTTCTTAAAGCTAAAACCTCTCAATCAGGTGATCTAGCTAACAAAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 250 TCTTCTTCTCCATTTTCTTAAAGCTAAAACCTCTCAATCAGGTGATCTAGCTAACAAAGA 309
Query 301 AGTAGGAGAAGACGAATCTTGTGACAAACCAACAACGTCAAGAGCTGATAAAAAGGTTTC 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AGAAGGAGAAGACGAATCTTGTGACAAACCAACAACGTCAAGAGCTGATAAAAAGGTTTC 369
Query 361 AGCCTTGAAAACCATGTGTGAGCTTAAAAGACCTGAGGTAAAGACAGAAGTGGTGGTTGT 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 370 AGCCTTGAAAACCATGTGTGAGCTTAAAAGACCTGAGGTAAAAACAGAAGTGGTGTTTGT 429
Query 421 AAAAGGTGACGAGAAGGGTCCGACCATAGTGAAAGAGGCAAGAGAACGAGAAGCCTCCTT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 430 AAAAGGTGACGAGAAGGGTCCGACCATAGTGAAAGAGGCAAGAGAACGAGAAGCATCATT 489
Query 481 ATTGGTTCTAGGCCAGAAGAAACAACATGCCACATGGCGGCTACTAATGGTATGGGCGTC 540
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ACTAGTTCTAGGCCAGAAGAAACAACATGCCACATGGCGGCTACTAATGGTATGGGCGTC 549
Query 541 GCAGTCCCGACCCGCGCCCAAACACGACTTCGTCGAGTATTGCATCAACAACTCTTCTTG 600
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 550 GCAGGCCCGACCCGTGACCAAACACGACTTCGTCGAGTATTGCATCAACAACTCTCCTTG 609
Query 601 CATGGCTATTGCGGTTCGTAAGAGAGGCAAGAAGCTTGGTGGATACACTCTTACAACTAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CATGGCTATTGCGGTTCGTAAGAGAGGCAAGAAGCTTGGTGGATACACTCTTACAACTAA 669
Query 661 ACGTCACAAAGATTTCTGGCTTCTTGCCTGAAATAGTTATCTATTCACATCTAAATTAAT 720
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 670 ACGTCACAAAGATTTCTGGCTTCTTGCCTGAATTAATTATCTATTCACATATAAATTAAT 729
Query 721 ATAACCTTTCTaaaaaaa 738
||||| ||| ||||||||
Sbjct 730 ATAACTTTTTTAAAAAAA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5