BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476039
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box tr... 1988 0.0
AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS... 684 0.0
AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:245024... 226 4e-58
AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box t... 126 4e-28
AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box t... 104 2e-21
AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box t... 99.0 1e-19
> AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box
transcription factor family protein | chr1:25982330-25986313
REVERSE LENGTH=1228
Length=1228
Score = 1988 bits (1076), Expect = 0.0
Identities = 1184/1234 (96%), Gaps = 15/1234 (1%)
Strand=Plus/Plus
Query 1 CCTAAAACCACTCTTACCCAAATCTCTCCATAAATAAAGATCCCGAGACTCAAACACAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTAAAACCACTCTTACCCAAATCTCTCCATAAATAAAGATCCCGAGACTCAAACACAAG 60
Query 61 TCTTATTATAAAGGAAAGAAAGAAAAACTTTCCTAATTGGTTCATACCAAAGTCTGAGCT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTTTATAAAGGAAAGAAAGAAAAACTTTCCTAATTGGTTCATACCAAAGTCTGAGCT 120
Query 121 CTTCTTTATAT-TACTCTTGTAGTTTCTTATCGGGGGTCTTTGTTTTGTTTGGTTCTTTT 179
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTTCTTTATATCT-CTCTTGTAGTTTCTTATTGGGGGTCTTTGTTTTGTTTGGTTCTTTT 179
Query 180 AGAGTAAGAAGTTTCTTAAAAAAGGATCAAAAATGGGGAGGGGTAGGGTTCAATTGAAGA 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 AGAGTAAGAAGTTTCTTAAAAAAGGATCAAAAATGGGAAGGGGTAGGGTTCAATTGAAGA 239
Query 240 GGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGA 299
Query 300 AGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCC 359
Query 360 ATAAGGGGAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCT 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATAAGGGAAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCT 419
Query 420 ATGAGAGGTACTCTTACGCCGAGAGACAGCTTATTGCACCTGAGTCTGATGTCAATACGA 479
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 420 ATGAGAGGTACTCTTACGCCGAAAGACAGCTTATTGCACCTGAGTCCGACGTCAATACAA 479
Query 480 ACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAACTTTTGGAGAGAAACCAGA 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 ACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGA 539
Query 540 GGCATTATCTTGGGGAAGACTTG-AATGCAATGAGCCCTAAGGAGCTTCAGAATCTGGAG 598
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 540 GGCATTATCTTGGGGAAGACTTGCAA-GCAATGAGCCCTAAAGAGCTTCAGAATCTGGAG 598
Query 599 CAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAG 658
Query 659 TCCATCAATGAGCTCCAAAGAAAGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCT 718
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCATCAATGAGCTCCAAAAAAAGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCT 718
Query 719 AAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAAGAGCAGTGGGATCAGCAG 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 AAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAGGAGCAGTGGGATCAGCAG 778
Query 779 AACCATGGCCACAATATGCCTCCCCCTCCACCGCCGCAGCAGCATCAAATCCAGCATCCT 838
||||| |||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 779 AACCAAGGCCACAATATGCCTCCCCCTCTGCCACCGCAGCAGCACCAAATCCAGCATCCT 838
Query 839 TACATGCTCTCTCATCAGCCATCTCCTTTTCTTAACATGGGTGGTCTGTATCAAGAAGAA 898
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 TACATGCTCTCTCATCAGCCATCTCCTTTTCTCAACATGGGTGGTCTGTATCAAGAAGAT 898
Query 899 GATCCAATGGCAATGAGGAGGAACGAACTCGAACTGACTCTTGAACCTGTTTACAACTGC 958
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 899 GATCCTATGGCAATGAGGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGC 958
Query 959 AACCTTGGCTGCTTCGCCGCATGAAGCACTTCCatatatatatatTTTATAATCGTCAAC 1018
|||||||||||||||||||||||||||| |||||||||||||| || || | ||||||||
Sbjct 959 AACCTTGGCTGCTTCGCCGCATGAAGCATTTCCATATATATAT-TTGTA-A-TCGTCAAC 1015
Query 1019 AATAAAAACAATTAGCCACATACATATAAATAGTGGCTAGGCTCTTTTCATCCAATTAAT 1078
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AATAAAAACAGTTTGCCACATACATATAAATAGTGGCTAGGCTCTTTTCATCCAATTAAT 1075
Query 1079 TAATATATTTTGGCAA--GTTCGATGTTCTTATATCATCATATATAAATTAGCAAGCTCC 1136
| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1076 -A-TAT-TTT-GGCAAATGTTCGATGTTCTTATATCATCATATATAAATTAGCAGGCTCC 1131
Query 1137 TTT-TTCTTT-GTAATTTTATAAGTTTGTTTGCTTCAATATGGGGCAAAATTGTAATATA 1194
||| |||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1132 TTTCTTCTTTTGTAATTTGATAAGTTTATTTGCTTCAATATGGAGCAAAATTGTAATATA 1191
Query 1195 TTTGACGGTCGGAGAGAATGAACGGGAACTTAAT 1228
||||| |||| ||||||||||||| |||||||||
Sbjct 1192 TTTGAAGGTCAGAGAGAATGAACGTGAACTTAAT 1225
> AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS-box
transcription factor family protein | chr1:9100153-9103603
REVERSE LENGTH=1038
Length=1038
Score = 684 bits (370), Expect = 0.0
Identities = 657/791 (83%), Gaps = 37/791 (5%)
Strand=Plus/Plus
Query 210 AAATGGGGAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 269
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 92 AAATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 151
Query 270 CATTCTCGAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCATGAGATCTCTGTTCTCTGTG 329
||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||
Sbjct 152 CATTCTCGAAAAGAAGAACTGGTCTTTTGAAGAAAGCTCAGGAGATCTCTGTTCTTTGTG 211
Query 330 ATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGGAAACTCTTCGAATACTCCACTG 389
|||| || ||| | ||| ||||||||||||||||||| ||| | ||||| |||||| |||
Sbjct 212 ATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGCAAATTGTTCGAGTACTCCTCTG 271
Query 390 ATTCTTGTATGGAGAAGATACTTGAACGCTATGAGAGGTACTCTTACGCCGAGAGACAGC 449
| ||||| ||||||||| |||| |||||||| |||||||| |||||||||||||||||||
Sbjct 272 AATCTTGCATGGAGAAGGTACTAGAACGCTACGAGAGGTATTCTTACGCCGAGAGACAGC 331
Query 450 TTATTGCACCTGAGTCTGATGTCAAT--AC-GA--A-CTGGTCGATGGAGTATAACAGGC 503
| ||||||||||| ||| | || ||| || || | |||||| |||||||||| |||||
Sbjct 332 TGATTGCACCTGACTCTCACGTTAATGCACAGACGAACTGGTCAATGGAGTATAGCAGGC 391
Query 504 TTAAGGCTAAGATTGAACTTTTGGAGAGAAACCAGAGGCATTATCTTGGG-GAAGACTTG 562
||||||| |||||||| ||||||||||||||||| ||||||||||| ||| ||||| |||
Sbjct 392 TTAAGGCCAAGATTGAGCTTTTGGAGAGAAACCAAAGGCATTATCT-GGGAGAAGAGTTG 450
Query 563 -AATGCAATGAGCC-CTAAGGAGCTTCAGAATCTGGAGCAGCAGCTTGACACTGCTCTTA 620
|| ||||||||| | ||||| || || |||||||||||||||||||| ||||||||||
Sbjct 451 GAAC-CAATGAGCCTC-AAGGATCTCCAAAATCTGGAGCAGCAGCTTGAGACTGCTCTTA 508
Query 621 AGCACATCCGCACTAGAAAAAACCAACTTATGTACGAATCCATCAATGAGCTCCAAAGAA 680
||||||| ||| | |||||||| ||||| ||| | || ||| |||| | ||||||||||
Sbjct 509 AGCACATTCGCTCCAGAAAAAATCAACTCATGAATGAGTCCCTCAACCACCTCCAAAGAA 568
Query 681 AGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCTAAACAGATCAAGGAGAGGGAAA 740
||||||||| ||||||||| |||||||||||||| | |||||||| |||||||||||||
Sbjct 569 AGGAGAAGGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGATAAAGGAGAGGGAAA 628
Query 741 AAATTCTTAGGGCTCAACAAGAGC-AGTGGGATCAGCAGAACCATGGCCACAAT-ATGCC 798
| || || ||| | ||||| | | | || || |||| ||||| || | | |||
Sbjct 629 ACATCCTAAGGACAAAACAA-ACCCAATGTGAGCAGCTGAACCGCAGCGTCGACGATG-- 685
Query 799 TCCCCCTCCACCGCCGCAGCAGCAT--CAA-ATCCAGCATCCTTACATGCTCTCTCATCA 855
| || | | ||| || | ||| ||| | || |||| ||||||| || |||||||
Sbjct 686 TACCAC---A--GCCACAAC--CATTTCAACACCCC-CATCTTTACATGATCGCTCATCA 737
Query 856 GCCATCTCCTTTTCTTAACATGGGTGGTCTGTATCAAGAAGAAGATCCAAT-GGCAATGA 914
| | |||||||| || || ||||||||| |||| ||||||||||| |||| ||| ||||
Sbjct 738 GACTTCTCCTTTCCTAAATATGGGTGGTTTGTACCAAGAAGAAGA-CCAAACGGCGATGA 796
Query 915 GGAGGAACGAA-CTCGAACTGACTCTTGAACCTGTTTACAACTGCAACCTTGGCTGCTT- 972
|||||||| || || || |||||||||||||| ||||||| | | ||||||||| ||
Sbjct 797 GGAGGAAC-AATCTGGATCTGACTCTTGAACCCATTTACAATT--A-CCTTGGCTG-TTA 851
Query 973 CGCCGCATGAA 983
|||||| ||||
Sbjct 852 CGCCGCTTGAA 862
> AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502482-24506143
REVERSE LENGTH=1113
Length=1113
Score = 226 bits (122), Expect = 4e-58
Identities = 187/217 (86%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 212 ATGGGGAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 271
||||| || ||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 131 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 190
Query 272 TTCTCGAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGT 328
||||| ||| ||||| | ||||| || | |||||||||||||||||||||||||||||
Sbjct 191 TTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 247
Query 329 GATGCTGAAGTTGCTCTTGTTGTCTTCTC--CCATAAGGGGAAACTCTTCGAATACTCCA 386
|||||||| |||||||| | |||||||| ||| |||| |||||||||||||| ||||
Sbjct 248 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGC-AAACTCTTCGAATATTCCA 305
Query 387 CTGATTCTTGTATGGAGAAGATACTTGAACGCTATGA 423
| || ||||| ||||||| ||||||||||||||||||
Sbjct 306 CCGACTCTTGCATGGAGAGGATACTTGAACGCTATGA 342
> AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein | chr1:8593642-8596098
REVERSE LENGTH=1140
Length=1140
Score = 126 bits (68), Expect = 4e-28
Identities = 136/167 (81%), Gaps = 11/167 (7%)
Strand=Plus/Plus
Query 209 AAAATGGGGAG-GGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGT 267
|||||||| || ||| || || ||||||||||||||||||||||||||||||| |||||
Sbjct 234 AAAATGGGAAGAGGG-AGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGT 292
Query 268 GACATTCT-CGAAA-AGAAG-AGCTGGTCTTTTGAAGAAAGC-TCATGAGATCTCTGTTC 323
||| || | | ||| ||||| | |||||||||||||||||| | | ||| | || ||||
Sbjct 293 GACGTT-TGC-AAAGAGAAGGAA-TGGTCTTTTGAAGAAAGCAT-ACGAGCTTTCAGTTC 348
Query 324 TCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGGAAA 370
| |||||||| ||||||||||| | ||||||| ||| | |||||
Sbjct 349 TATGTGATGCAGAAGTTGCTCTCATCATCTTCTCAAATA-GAGGAAA 394
> AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box
transcription factor family protein | chr5:5151334-5154154
REVERSE LENGTH=1436
Length=1436
Score = 104 bits (56), Expect = 2e-21
Identities = 107/130 (82%), Gaps = 10/130 (8%)
Strand=Plus/Plus
Query 234 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCTCG-AAA-AG-AAGAGCTG 290
||||||||||||||||||| ||||| |||||||| || || | | ||| | | || | |
Sbjct 410 TGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACGTT-T-GCAAAGCGTAGGAAC-G 466
Query 291 GTCTT-TTGAAGAAAGCTCATGAGA-TCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGT 348
|| || |||||||||||| |||| | | ||||||||||||||||||||||||||||| |
Sbjct 467 GT-TTGTTGAAGAAAGCTTATGA-ATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCAT 524
Query 349 TGTCTTCTCC 358
||||||||
Sbjct 525 CATCTTCTCC 534
> AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box
transcription factor family protein | chr2:1129268-1131838
FORWARD LENGTH=1341
Length=1341
Score = 99.0 bits (53), Expect = 1e-19
Identities = 97/117 (83%), Gaps = 8/117 (7%)
Strand=Plus/Plus
Query 234 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCT-CGAAA-AGAAGAGCTGG 291
|||||||||||||||||||||||||||||||||| || || | | ||| |||||| |||
Sbjct 377 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACTTT-TGC-AAAGAGAAGAAATGG 434
Query 292 TCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGA-AGTTGCTCTT 346
| || | ||||| ||| ||||| | ||||| || ||||||||||| | ||||||||
Sbjct 435 T-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGAGA-TTGCTCTT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5