BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476040
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1816 0.0
> AT1G69160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13980.1);
Has 173 Blast hits to 172 proteins in 54 species: Archae -
0; Bacteria - 0; Metazoa - 25; Fungi - 33; Plants - 84; Viruses
- 2; Other Eukaryotes - 29 (source: NCBI BLink). | chr1:26000214-26001588
FORWARD LENGTH=1375
Length=1375
Score = 1816 bits (983), Expect = 0.0
Identities = 1168/1254 (93%), Gaps = 25/1254 (2%)
Strand=Plus/Plus
Query 1 ATCATTCCTTAGCAACTTGTTCCTCATTCCCCGCAAATCAAGCATAGAAAGAGATACTCT 60
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 ATCATTCCCTAGCAACTTGTTCCTCATTCTCCGCAAATCAAGCATAGAAAGAG--ACTCT 58
Query 61 T-G-GATCATCCAAGTATCCGATTCTCAAACCGTAAAAATATAATGTCCATGAAAGGGAT 118
| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 59 TGGAGATCATCCAAGTATCCGATTCTCAGACCCTAAAAATATAATGTCCATGAAAGGGAT 118
Query 119 CTCATCAGCAGAGCCAGATAAGCTCTCGAGGAGAATATCTTTGACCAACAAGCGCAATTC 178
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 119 CTCATCAGCAGAGTCAGATAAGCTCTCTAGGAGAATATCTTTGACCCACAAGCGCAATTC 178
Query 179 CGAAGAGCTTGACGTGTTTGAGGCCGCAGTGTACTTCGGCTACAATGAAGCCTCCTCTGG 238
||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 179 CGAAGAGCTTGACGTGTTTGAAGCTGCCGTGTACTTCGGCTACAATGAAGCCTCCTCCGG 238
Query 239 TGACCATAGACCTACACAAAAGTATGGCTATAACGGAGCGAGAGAGGAGAATCCTAGGCG 298
||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 239 TGACCATGGACATACACAAAAGTATGGCTATAACGCAGCGAGAGAGGAGAATCCGAGGAG 298
Query 299 ATGGGGAATATTAGGAGGAGGAGGAAGAAGAATCAGCTTGGATTTGCCTATCAGATGCTC 358
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 299 ATGGGGAATATT---AGGAGGTGGAAGAAGAATCAGCTTGGATTTGCCTATTAGATGCTC 355
Query 359 AGAACAAGTGCACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAA 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGAACAAGTGTACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAA 415
Query 419 GGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGCTCACCAGGTGGGAAAATCGCCAG 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 GGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGTTCACCAGGTGGGAAAATCGCCAG 475
Query 479 CTTCTTGAACTCCTTGTTCCATCAAGCAAGTTCGAAGAAGAACAAATCAAAGTCAAAGTC 538
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 476 CTTCTTGAACTCCTTGTTCCATCAAGCAGGTTCGAAGAAAAACAAATCAAAGTCAAAGTC 535
Query 539 AAAGACAAAGCCAACGGATCCAAAAGTggaagaggagatccctggaggaggatggatgag 598
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 536 AAAGACAAAGCCAACAGATCCAGAAGTGGAAGAGGAGATCCCCGGAGGAGGATGGATGAG 595
Query 599 gaggaggagAAGAAGCAGTATCAGCCATTTCTTGAGCTCAAGCAGATCTAATTCAaccac 658
||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 596 GAGGAGGAGGAGAAGCAGTATCAGCCATTTCTTTAGCTCAAGCAGATCTACTTCAACAAC 655
Query 659 caccaccaccacGGCATCATCATCATCAAAATCTCTGATGTCGTCTTCAAGCTCGGGTTT 718
|||||| |||||||| |||||||| |||||||||||||| || || ||||||||||||||
Sbjct 656 CACCACTACCACGGCGTCATCATCTTCAAAATCTCTGATTTCCTCATCAAGCTCGGGTTT 715
Query 719 CAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTA 775
Query 779 CACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAAAGAAGACCAACAAAGAGTTCTCATG 838
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 776 CACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAACTAAGACCAACAAAGAGTACTCTTG 835
Query 839 GCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGGCtga 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 836 GCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGTCGGA 895
Query 899 tgatga------cgatgatgatcggagaataaggagagagggagatgatgatggaatgga 952
|||||| |||||||||| ||||||||| |||||| ||||| ||||||||||||||
Sbjct 896 TGATGAAGATATCGATGATGATAGGAGAATAAAGAGAGAAGGAGAGGATGATGGAATGGA 955
Query 953 gagtgatTCAAGTTCTGATCTCTTCGAGTTGCAAAACTACGAGTTGTCTCGTGGAGGCTT 1012
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 956 GAGTGATTCAAGTTCTGATCTCTTCGAGTTGCAAAATTACGAATTATCTCGTGGAGGCTT 1015
Query 1013 ACCAGTCTACGAGACTACCAATGTAGCTAACATCAACAACACTCATATATAATCAAAACT 1072
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1016 GCCAGTCTACGAGACTACCAATGTAGCTAACATCAACAAGACTCATATATAATTTAAACT 1075
Query 1073 CTCT-GAGTGTCAAAAACTCCATCAGATCTTGGTAATAACACCCATAAAACAAATTGTTT 1131
||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1076 ATCTTGAGTGTCATCAACTCCATCAGATCTTGGTAATGACACCCATAAAGCAAATTGTTT 1135
Query 1132 T-TTCAGATTTGTTCTTGTCTGATTGTTCTTCAGTTATATGTAATTCTTTTGGTTTTCTT 1190
| ||| ||||||||||||||||||||||| | |||||||||| || || ||||| |||
Sbjct 1136 TCTTC-GATTTGTTCTTGTCTGATTGTTCATAAGTTATATGT--TT-TTG-GGTTT-CTT 1189
Query 1191 GGATTTGTTTGTGGAAGCTTTAATGAAtttttttttttCTGTATGAGATT-TTT 1243
|||||||||||||||||||||||||| | ||||||||| |||||||||| |||
Sbjct 1190 GGATTTGTTTGTGGAAGCTTTAATGA-TATTTTTTTTT--GTATGAGATTATTT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5