BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476042
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69180.1 | Symbols: CRC | Plant-specific transcription facto... 1461 0.0
> AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor
YABBY family protein | chr1:26007465-26009059 REVERSE LENGTH=934
Length=934
Score = 1461 bits (791), Expect = 0.0
Identities = 891/938 (95%), Gaps = 12/938 (1%)
Strand=Plus/Plus
Query 1 ATAAATACAAGCCTTCTAACTCATAAAATAACCATAACCCTAACTCTACAAAGTTCTTCT 60
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATAAATACAAGCCTCCTAACTCATAAAATAAGCATAACCCTAACTCTACAAAGTTCTTCT 60
Query 61 GATTC-TT-TATCTCTCTCTTTCTTTCAAGAGCGGTTTTCAATCCATTCGCTAAAGATCA 118
||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GATTCTTTCTCTCTCTCTCTTTCTTTCAAGAGCGGTTTTCAATCCATTCGCTAAAGACCA 120
Query 119 TGAACCTTGAAGAGAAACCAACCATGGCAGCTTCAAGGGCTTCCCCTCAAACCGAACATC 178
||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 121 TGAACCTAGAAGAGAAACCAACCATGACGGCTTCAAGGGCTTCCCCTCAAGCCGAACATC 180
Query 179 TCTACTACGTCCGGTGTAGCATCTGCAACACCATCCTCGCGGTTGGGATACCATTGAAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTACTACGTCCGGTGTAGCATCTGCAACACCATCCTCGCGGTTGGGATACCATTGAAGA 240
Query 239 GAATGCTTGACACTGTGACAGTGAAATGCGGACATTGCGGTAACCTCTCGTTTCTGACCA 298
||||||||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 241 GAATGCTTGACACGGTAACGGTGAAATGCGGCCATTGTGGTAACCTCTCGTTTCTCACCA 300
Query 299 CAACTCCTCCTCTCCAAGGCCATGTCAGCCTCACCCTTCAGATGCAGAGCTTTGGTGGGA 358
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 301 CAACTCCTCCTCTTCAAGGCCATGTTAGCCTCACCCTTCAGATGCAGAGCTTTGGTGGAA 360
Query 359 GTGAGTATAAGAAGGGAAGCTCTTCTTCTTCCTCTTCCTCTACCTCCAGCGACCAGCCAC 418
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 361 GTGACTATAAGAAGGGAAGCTCTTCTTCTTCCTCTTCCTCCACCTCCAGCGACCAGCCCC 420
Query 419 CATCCCCCACACCACCCTTTGTCGTTAAACCTCCTGAGAAGAAGCAGAGACTTCCATCTG 478
|||| ||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 421 CATCTCCCTCACCTCCCTTTGTCGTCAAACCTCCTGAGAAGAAGCAGAGGCTCCCATCTG 480
Query 479 CATACAACCGCTTCATGAGGGATGAGATCCAACGAATCAAAAGTGCTAATCCGGAAATAC 538
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 481 CATACAACCGCTTCATGAGGGATGAGATCCAACGCATCAAAAGTGCCAATCCGGAAATAC 540
Query 539 CACACCGTGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAAGTACATACCCAACTCTC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACACCGTGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAAGTACATACCCAACTCTC 600
Query 599 CTACTTCCATTACTTCCGGAGGCCACAACATGATCCATGGCTTGGGGTTCGGTGAGAAGA 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 CTACTTCCATTACTTCCGGAGGCCACAACATGATCCATGGCTTGGGATTCGGTGAGAAGA 660
Query 659 AGTGaaaaaaaaaaTCTCAGGGGAAAAGAAGCC-AAAAATAACAAACGCATGCACGTGTG 717
|||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 AGTGAACAAAA----CTCAGGGGAAAAGAAGCCTAAAAATAACAAACGCATGCACGTGTG 716
Query 718 CGAGTGGCTGCGTCGTTTTTCTCATCTTGTGTTGTTCAT--GT--AATTTTCCTTATGTA 773
||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||
Sbjct 717 CGAGTGGCTGCGTCGTTTTTCTCATCTTGTGTTGTTCTTCTGTGTAATTTTC-TTATGTA 775
Query 774 TGTCATGTTGCAGAAAATGATGTTGCCTTAGTTTCTATGACTTTATATTTCTGTCTGTCT 833
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 776 TGTCATGTTGCAGAAAATGATGTTGCCTTAGTTTTTATGACTTTATATTTCTGTCTGTCT 835
Query 834 TTAGATTTGAAAGTAACGTCACTTGCTATGTCCCTTTGGACGTTTATGTCTGGTCTTTAT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTAGATTTGAAAGTAACGTCACTTGCTATGTCCCTTTGGACGTTTATGTCTGGTCTTTAT 895
Query 894 TTGTCTTAATCCTATCAAAAATTTATCTGCTTATTCCT 931
|||||||||||||||||||| ||||| ||| |||||||
Sbjct 896 TTGTCTTAATCCTATCAAAATTTTATATGCGTATTCCT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5