BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476049

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69230.1 | Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026353-26...   675    0.0  


> AT1G69230.1 | Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026353-26027708 
REVERSE LENGTH=617
Length=617

 Score =  675 bits (365),  Expect = 0.0
 Identities = 480/532 (90%), Gaps = 21/532 (4%)
 Strand=Plus/Plus

Query  23   CTTGCTGATCAGCTAAAGAATC-TTTGAGAGAAGCAAGAGAGATAGAATGGGTCGTGGAG  81
            |||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct  49   CTTGCTGATCAGCTAAAGTA-CATTTGAGAGAAGCAAGAGAGATAGAATGGGGCGTGGAG  107

Query  82   TTAGTGCCGGTGGAGGGCAGAGTTCTTTGGGATATCTTTTTGGGAGCGGAGAGGCTCCAA  141
            ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  108  TTAGTGCAGGTGGAGGACAAAGTTCTTTGGGATATCTTTTTGGGAGCGGAGAGGCTCCAA  167

Query  142  AGCCAGCAACCGTTAACAAAGCTCCAGCCGAAACCCAGTCTTCTGCTCCTGCTCCACCT-  200
            ||| |||| ||||||||||| ||||||| |||||  |||||||||||| |||||||||| 
Sbjct  168  AGCTAGCAGCCGTTAACAAAACTCCAGCTGAAACTGAGTCTTCTGCTCATGCTCCACCTA  227

Query  201  CTTCAAGCCGCTGCTCCAAAGGCTGTTGATAGCATCAAACAAGTTCCTGCTGGTCTCAAT  260
            | |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  228  C-TCAAGCTGCTGCTGCAAACGCTGTTGATAGCATCAAACAAGTTCCTGCTGGTCTCAAT  286

Query  261  AGCAACTCTACAAATAATTACATGCGTGCAGAAGGACAGAACACAGGCAACTTCATTACG  320
            ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct  287  AGCAACTCTGCAAACAATTACATGCGTGCAGAAGGACAAAACACAGGCAATTTCATCACG  346

Query  321  GACCGGCCATCGACCAAAGTTCACTCAGCTCCAGGAGGTGGCTCGTCTCT-GAATTACCT  379
            ||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct  347  GACCGACCATCGACCAAGGTTCACTCAGCTCCAGGAGGTGGCTCGTCTCTTGA-TTACCT  405

Query  380  CTTTGGTGGTGGTAGCAACTAGCTATTTGAGGCAAACTTGGTCACTCTATCTTCTTTATC  439
            ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct  406  CTTTGGTGGTGGTAGCAACTAGCTACT-GAGGCCAACTTGGTCACTCTATCTTCTTTATC  464

Query  440  CCAAGTCACCCTTGTATCATTTTCGTGGAACCTCTTGCCTCTTGGTCCCTAGCAGAATAT  499
            ||| ||||| ||| ||||||||| ||| |||||||||  | |    |||||||| || ||
Sbjct  465  CCACGTCACACTTCTATCATTTT-GTGAAACCTCTTG--T-T----CCCTAGCAAAAAAT  516

Query  500  AAAATCTGTATAATCTCTAAATTTCTA----T--GTGATTCAATTGTTGTAT  545
            |||||||||||||||||||||||||||    |  ||| ||||||||||||||
Sbjct  517  AAAATCTGTATAATCTCTAAATTTCTACGCATATGTGCTTCAATTGTTGTAT  568



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26121756440


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5