BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476053
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69270.1 | Symbols: RPK1 | receptor-like protein kinase 1 | ... 2796 0.0
AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:2... 58.4 3e-07
> AT1G69270.1 | Symbols: RPK1 | receptor-like protein kinase 1
| chr1:26040689-26042702 REVERSE LENGTH=2014
Length=2014
Score = 2796 bits (1514), Expect = 0.0
Identities = 1861/2019 (92%), Gaps = 61/2019 (3%)
Strand=Plus/Plus
Query 1 AATGTCATTTTCTTTTGGAGTAAAGAAACTTTCTTCTTTTGCAACTTG-AAA-TTTCGAT 58
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1 AATGTCATTTTCTTTTTGAGTAAAGAAACTTTCTTCTTTTGCAACTTGAAAATTTTCGAT 60
Query 59 TTCGAGAGC-----------GAGA-A-A--GAGAGATCaaaaaaaTTTGTG-AAAAAGAG 102
||||||||| |||| | | ||||||||||||||||||||| ||||||||
Sbjct 61 TTCGAGAGCGAAGGAAGAGAGAGAGAGAGGGAGAGATCAAAAAAATTTGTGAAAAAAGAG 120
Query 103 A--CA----A----TTT-TT-A--TT-TTAG---GGTTT----T-Gtctctttctctctc 139
| | | ||| || | || || | ||| | |||||||||||| ||
Sbjct 121 ATTTATTTTAGGGTTTTGTTGATTTTCTTTGTTCATTTTGCCGTCGTCTCTTTCTCTTTC 180
Query 140 tctTGTGAAG---AAGAAGAAAAATGAAAATTCTGGGTTTGGTCTTCTTGCTGTTTAATT 196
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCTTGTGAAGAAAAAGAAGAAAAATGAAACTTCTGGGTTTGGTCTTCTTGCTGTTTAATC 240
Query 197 TGTTTGTGTTTTCATTTTCTCGGAAACTTTTGACCGAGA------GTGGTCTTCACGACG 250
||||| ||||||| ||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 241 TGTTTATGTTTTCGTTTTCTCGGAAACTTTTAACCGAGAGTGGTGGTGGTCTCCACGACG 300
Query 251 AAGCTGTTCTTTTGAAGCTGAAGAGTAGTTTCTTCGATCCAAATGGAGTTCTATCTAGCT 310
|||||| ||| |||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 301 AAGCTGCTCTGTTGAAGTTGAAGAGTAGTTTCTTGGATCCAAATGGAGTTCTGTCTAGCT 360
Query 311 GGGTTTCCGACAGCTCATCAAACCATTGTTCTTGGTACGGTGTCTCTTGTAACTCTGATT 370
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 GGGTTTCCGACAGCTCATCAAACCATTGTTCTTGGTACGGTGTCTCTTGCAACTCTGATT 420
Query 371 TAAGAGTCGTCTCTTTGATTCTCAGAGGTTGTGATGAGCTTGAAGGTAGTGGTGTTCTTC 430
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 CGAGAGTCGTTTCTTTAATTCTCAGAGGCTGTGATGAGCTTGAAGGTAGTGGTGTTCTTC 480
Query 431 ATTTCCCAGATTTGTCTTCTTGTTCTTCAAGTAAAAGAAGACTTGGTGGTGTAATCTCTC 490
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTCCCAGATTTGTCTTCTTGTTCTTCAAGTAAAAGAAGACTTGGTGGTGTAATCTCTC 540
Query 491 CGGTTGTGGGAGATTTGTCTGAAATTAGGGTTTTGTCTCTGTCTTTTAATGATCTAAGAG 550
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 541 CTGTTGTTGGAGATTTGTCTGAAATTAGGGTTTTATCTCTGTCTTTTAATGATCTTAGAG 600
Query 551 GTGAAATTCCAAAGGAGATTTGGGGGTTGGAGAAATTAGAGATTCTTGATCTTAAAGGTA 610
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGAGATTCCAAAGGAGATTTGGGGGTTGGAGAAATTAGAGATTCTTGATCTTAAAGGTA 660
Query 611 ACAGCTTTATCGGTGGAATTAGGGTTCTTGATAATGTTGTTCTTAGGAAACTTATGAGTT 670
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ACAACTTTATCGGTGGAATTAGGGTTGTTGATAATGTTGTTCTTAGGAAACTTATGAGTT 720
Query 671 TTGAAGATGAAGATGAAATTGGTCCAAGCTCAGC---TGATGATTCTCCTGGTAAACCTG 727
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 721 TTGAGGATGAAGATGAAATTGGTCCAAGCTCAGCTGATGATGATTCTCCTGGTAAATCTG 780
Query 728 GATTGTATCCGATTGAGATTGCTTCGATTGTGTCGGCTTCAGTGATTGTCTTTGTGCTTC 787
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 781 GATTGTATCCGATTGAGATAGCTTCTATTGTGTCAGCTTCAGTGATTGTCTTTGTGCTTC 840
Query 788 TTGTTCTTGTGCTCTTGTTCCTCTACACGAAGAAATGGAAACGAAACTCTCAGATTCAGG 847
||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 841 TTGTTCTTGTGATCTTGTTCATCTACACGAGGAAATGGAAACGAAACTCTCAGGTTCAGG 900
Query 848 TAGATGAAATCAAGGAGATCAAAGTGTTTGTGGACATTGGTATTCCTCTGACGTATGAGA 907
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 TAGATGAGATCAAGGAGATTAAAGTGTTTGTTGACATTGGTATTCCTCTGACGTATGAGA 960
Query 908 TCATTGTTAGAGCTACTGGTTACTTTAGTAACTCTAACTGTATTGGTCATGGCGGTTTTG 967
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 961 TCATTGTTAGAGCTACTGGTTACTTTAGTAACTCTAACTGTATCGGTCACGGCGGTTTCG 1020
Query 968 GTTCGACGTATAAAGCAGAGGTGTCTCCAACGAATGTGTTTGCTGTTAAAAGACTCTCTG 1027
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTTCGACTTATAAAGCAGAGGTGTCTCCAACGAATGTGTTTGCTGTTAAAAGACTCTCTG 1080
Query 1028 TTGGGAGGTTTCAAGGGGATCAACAGTTTCATGCTGAGATCTCTGCTCTTGAGATGGTTA 1087
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTGGGAGGTTTCAAGGTGATCAACAGTTTCATGCTGAGATCTCTGCTCTTGAGATGGTTA 1140
Query 1088 GGCATCCGAATCTTGTTATGTTAATCGGTTACCACGCGAGCGAAACCGAGATGTTTCTTA 1147
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1141 GGCATCCGAATCTTGTTATGTTAATCGGTTACCATGCGAGCGAAACCGAGATGTTTCTTA 1200
Query 1148 TCTACAACTACTTATCCGGGGGAAACCTTCAAGATTTCATTAAAGAAAGATCGAAAGCTG 1207
| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 TTTACAACTACTTATCTGGAGGAAACCTTCAAGATTTCATTAAAGAGAGATCGAAAGCTG 1260
Query 1208 CTATTGAGTGGAAGGTTCTTCACAAGATTGCTCTTGATGTTGCGCGTGCTCTCGCCTATC 1267
|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1261 CTATTGAGTGGAAGGTACTTCACAAGATTGCTCTTGATGTAGCGCGTGCTCTCTCCTATC 1320
Query 1268 TTCACGAACAGTGTTCCCCGAAAGTCTTGCATAGAGACATCAAACCGAGTAACATACTCT 1327
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1321 TTCACGAACAGTGTTCTCCTAAAGTCTTGCATAGAGATATCAAACCGAGTAACATACTCT 1380
Query 1328 TGGACAACAACTACAACGCTTATCTATCCGATTTCGGACTCTCGAAACTCTTGGGAACTT 1387
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1381 TGGACAACAACTACAACGCTTATCTATCTGATTTCGGACTCTCGAAACTCTTGGGAACTT 1440
Query 1388 CGCAGTCTCATGTCACAACAGGTGTAGCTGGTACATTCGGTTATGTTGCTCCAGAATACG 1447
||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||
Sbjct 1441 CGCAGTCTCATGTCACAACTGGTGTGGCTGGAACATTCGGATATGTAGCTCCAGAGTACG 1500
Query 1448 CAATGACGTGCCGTGTCTCCGAGAAAGCAGATGTTTACAGCTACGGCATAGTTCTCTTGG 1507
||||||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||
Sbjct 1501 CAATGACATGCCGAGTCTCGGAGAAAGCAGATGTTTACAGCTATGGGATAGTCCTCTTGG 1560
Query 1508 AGCTCATATCGGACAAGCGAGCGCTAGATCCATCTTTCTCTTCGCATGAGAACGGGTTTA 1567
|||| ||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| |
Sbjct 1561 AGCTGATATCGGACAAACGAGCTCTGGATCCTTCTTTCTCATCGCATGAGAACGGGTTCA 1620
Query 1568 ACATCGTGTCCTGGGCACATATGATGTTGAGTCAAGGCAAAGCCAAAGAAGTCTTCACCA 1627
|||| || || ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1621 ACATTGTCTCGTGGGCTCATATGATGTTGAGTCAAGGCAAAGCGAAAGAAGTCTTCACCA 1680
Query 1628 AAGGACTATGGGAGACTAGTCCACCAGACGATTTGGTCGAGGTTCTGCATTTGGCTCTCA 1687
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1681 CAGGACTATGGGAGACTGGTCCTCCAGACGATTTGGTCGAGGTTCTGCATTTGGCACTCA 1740
Query 1688 AATGCACAGTCGATAGCCTTTCGATAAGGCCGACAATGAAACAAGCTGTAAGACTGCTGA 1747
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AATGCACCGTCGATAGCCTCTCGATAAGGCCGACAATGAAACAAGCTGTAAGACTGCTGA 1800
Query 1748 AACGAATCCTGCCTTCTAGATTGTGATACAAAGCTAGAAGAAAGTGTGTGTTTAGTAGAT 1807
||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1801 AACGAATCCAGCCTTCTAGATTGTGATACAAAGCTAGAAGAAAG-GTGTTTTTAG-AG-- 1856
Query 1808 GATTTGTACAGCAGCAAACAAGTGCGTAGCCATTAGAATCATTT-TCAAGTCTGTTTTTA 1866
||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1857 GATTTGTACAGCAGCAAACAAGTGCCTAGCCATTAGAATC-TTTCTCAAGTCTGTTTTTT 1915
Query 1867 AAATTTTCAGTG-TAGGGAGGTTTTTCATATGAATCATCAAAATGTTATTCTCATTCTAC 1925
| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1916 ATATTTTCAGTGCTAGGGAGGTTTTTCATATGCATCATCAAAATGTTATTCTCAGTCTAC 1975
Query 1926 TCTCTTGAAA-CTGATATAAATGATGTTTCTTTCTCCTT 1963
|||||||||| ||||||||||||||||||||||||||||
Sbjct 1976 TCTCTTGAAAACTGATATAAATGATGTTTCTTTCTCCTT 2014
> AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:26039048-26040720
FORWARD LENGTH=1454
Length=1454
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 1933 AAACTGATATAAATGATGTTTCTTTCTCCTT 1963
|||||||||||||||||||||||||||||||
Sbjct 1453 AAACTGATATAAATGATGTTTCTTTCTCCTT 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5