BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476056
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69310.1 | Symbols: WRKY57, ATWRKY57 | WRKY DNA-binding prot... 1395 0.0
> AT1G69310.1 | Symbols: WRKY57, ATWRKY57 | WRKY DNA-binding protein
57 | chr1:26054308-26058035 REVERSE LENGTH=1360
Length=1360
Score = 1395 bits (755), Expect = 0.0
Identities = 888/950 (93%), Gaps = 17/950 (2%)
Strand=Plus/Plus
Query 74 tcATCATGAACGATCCTGATAATCCCGATCTGACCAACGACGACTCTGCTT-G-GAG-A- 129
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
Sbjct 122 TCATCATGAACGATCCTGATAATCCCGATCTGAGCAACGACGACTCTGCTTGGAGAGAAC 181
Query 130 -CA-ACTCACATCTCAAGATTCTGACTTCTTCGACAGAGACACTTCCAATATCCTCTCTG 187
|| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 182 TCACACTCACAGCTCAAGATTCTGACTTCTTCGACCGAGACACTTCCAATATCCTCTCTG 241
Query 188 ACTTCGGATGGAACCTCCACCACTCCTCCGATCATCAACACAGTCTCCGATTCGACTCCG 247
||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 242 ACTTCGGTTGGAACCTCCACCACTCCTCCGATCATCCTCACAGTCTCAGATTCGACTCCG 301
Query 248 ATTTAACACCAACCGCCGGAGTCAAACCTACCACCGTCACTTCTTCTTGTTCCTCATCCG 307
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATTTAACACAAACCACCGGAGTCAAACCTACCACCGTCACTTCTTCTTGTTCCTCATCCG 361
Query 308 CCGCCGTTTCTGTTGCCGTTACCTCTAATAATAATAATCCCTCCGCTACCTCGAGTTCAA 367
|||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 362 CCGCCGTTTCCGTTGCCGTTACCTCTACTAATAATAATCCCTCAGCTACCTCAAGTTCAA 421
Query 368 GTGAAGATCTGGCCGAGAACTCAACCGCCTCCGCCGAGAAAACACCACCACTGGAGACAC 427
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 422 GTGAAGATCCGGCCGAGAACTCAACCGCCTCCGCCGAGAAAACACCACCACCGGAGACAC 481
Query 428 CAGCGAAGGAGAAGAAGAAGGCTCAAAAGCGAATTCGGCAACCGAGATTTGCATTCATGA 487
||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 482 CAGTGAAGGAGAAGAAGAAGGCTCAAAAGCGAATTCGGCAACCAAGATTCGCATTCATGA 541
Query 488 CCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGGCAAAAAG 547
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 CCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGACAAAAAG 601
Query 548 CCGTCAAGAATAGCCCATTCCCAAGGAGTTACTATAGATGCACAAACAGCAGATGCACGG 607
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 CCGTCAAGAATAGCCCATTCCCAAGGAGCTACTATAGATGCACAAACAGCAGATGCACGG 661
Query 608 TGAAGAAGAGAGTAGAACGTTCATCCGAAGATCCATCAATAGTGATCACAACATACGAAG 667
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 662 TGAAGAAGAGAGTAGAACGTTCATCAGATGATCCATCGATAGTGATCACAACATACGAAG 721
Query 668 GACAACATTGCCATCAAACCATTGGATTCCCTCGTGGCGGAATCCTCACTTCACACGATC 727
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 722 GACAACATTGCCATCAAACCATTGGATTCCCTCGTGGTGGAATCCTCACTGCACACGACC 781
Query 728 CTCATAGCTTCACATCTCATCACCATCTCCCTCCCCCATTGCCAAATCCTTATTATTACC 787
| ||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 782 CACATAGCTTCACTTCTCATCATCATCTCCCTCCTCCATTACCAAATCCTTATTATTACC 841
Query 788 AAGAACTCCTTCATCAACTTCACAGAGACAATAATGCTCCTTCACCGCGGTTACCCAAAT 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 842 AAGAACTCCTTCATCAACTTCACAGAGACAATAATGCTCCTTCACCGCGGTTACCCCGAC 901
Query 848 CTACAACTGAAGATGCACTTGCCGTGTCTAAC-CCATCAGAGGAAGGCCTACTTGGTGAT 906
|||| ||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||||
Sbjct 902 CTACTACTGAAGATACACCTGCCGTGTCTA-CTCCATCAGAGGAAGGCTTACTTGGTGAT 960
Query 907 ATTGTACCTCAAACTATGCGCAATCCTTAAGGTAACTTCTTGGTTTGCGTAGCAACAGCT 966
||||||||||||||||||||||| |||| |||||| |||||| |||||||| ||||
Sbjct 961 ATTGTACCTCAAACTATGCGCAACCCTTGAGGTAAG--CTTGGTA--CGTAGCAATAGCT 1016
Query 967 AAGGAGGTGCTAACTCATTATAGA-AGA-GAT-T-GCAGACCC-AATATG 1011
|||||||||||||||||||||| | ||| ||| | ||||||| ||||||
Sbjct 1017 AAGGAGGTGCTAACTCATTATATATAGAAGATATTGCAGACCAGAATATG 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5