BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476060
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69330.1 | Symbols: | RING/U-box superfamily protein | chr1... 1805 0.0
> AT1G69330.1 | Symbols: | RING/U-box superfamily protein | chr1:26063816-26065505
REVERSE LENGTH=1374
Length=1374
Score = 1805 bits (977), Expect = 0.0
Identities = 1238/1353 (92%), Gaps = 61/1353 (5%)
Strand=Plus/Plus
Query 1 CACGGCGGATCAACgagagagagaaaaagagagagGCTTTATTCTTCTTCTTCCTCTCTT 60
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 2 CACGGCGGATCAACGAGAGAGAGAAAAAGAGAGAGGCTTTA------TTC-T--TCTCTT 52
Query 61 CCCCGTTTCGATATCTTCTTCAATACATCTGCGTATCTGA-TTTGAAAGATTTAACGGTT 119
|||||||||||| || |||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 53 CCCCGTTTCGATCTCCTCTTTAATGCATCTGCGTATCTGATTTTGAAAGATTTAACGGTT 112
Query 120 CGTAAAAATGATGGGTATTGGTCAAAGAAGCTCTTTTCAATCTGGGAAGGTTACTGGGT- 178
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CTTTAAAATGATGGGTATTGGTCAAAGAAGCTCTTTTCAATCTGGGAAGGTTACTGGGTA 172
Query 179 AATGTTTTGTACATTGGCTCA-G--------A--TT--T--T-A---T-A-----AAGTT 213
|||| || ||||||||||||| | | || | | | | | |||||
Sbjct 173 AATG-TTGGTACATTGGCTCAGGTTTTATAAAGTTTGGTGATCATTCTCAGTTTCAAGTT 231
Query 214 TGATCAAAATGTGGGGCTTTGCGTCGAATGTCATTGGAAGTATGGGGTTAAAGAAGTCCC 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TGATCAAAATGTGGGGCTTTGCGTCGAATGTCATTGGAAGTATGGGGTTAAAGAAGTCCC 291
Query 274 CTAAAGATCCAGCTCAAGCATCCTCTCAATGCTCTGATGACGAGGTTTCAAATGTTAGCA 333
|||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 292 CTAAAGATTCAGCTCAAGCATCCTCTCAATGCTCAGATGATGAGGTTTCAAATATTAGCA 351
Query 334 GGGATGAAGAAGGATTAGAATGTCCCATATGTTGGGAATCTTTCAACATTGTCGAGAATG 393
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 352 GGGATGAAGAGGGATTAGAATGTCCCATATGTTGGGAATCTTTCAACATTGTTGAGAATG 411
Query 394 TTCCCTATGTGTTATGGTGTGGTCATACTCTTTGTCAGAATTGTGTCTTTGGGCTACAAT 453
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 412 TTCCTTATGTGTTATGGTGTGGTCATACTCTTTGCCAGAATTGTGTCTTTGGTCTCCAAT 471
Query 454 CTGCTGTTTTGAGACTCTCGAGCCAAGATA-TCAGGATTCCCTTTTTCGTCTCGTGCCCG 512
||||||| ||||||||||| |||||||||| || ||||||| ||||||||||||||||||
Sbjct 472 CTGCTGTCTTGAGACTCTCAAGCCAAGATATTC-GGATTCCGTTTTTCGTCTCGTGCCCG 530
Query 513 TGGTGTCAGTTGCTTTCGTTCAGGATTGTCTACAAGGGTAATCTAAAGTTCCCTCGGAAG 572
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 TGGTGTCAGTTGCTTTCGTTCAGGATTGTTTACAAGGGTAATCTAAAGTTCCCTCGGAAG 590
Query 573 AATTTCTTCCTTCTCTGGATGGTTGAGAGTCTGAATGGTGACAGG---A--C------A- 620
||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 591 AATTTCTTCCTTCTCTGGATGGTTGAGAGTCTGAATGGTGACAGGACAAGTCATGGTGAC 650
Query 621 A-G-C----CATGGTTCTTTGGTCAGC-GATAACCAGCAATCGGTTCCGACTCCGAGGTG 673
| | | |||||||| ||||||| | |||||||||||||||| |||||||||||||||
Sbjct 651 AGGACAAGTCATGGTTCCTTGGTCA-CTGATAACCAGCAATCGGCTCCGACTCCGAGGTG 709
Query 674 TAGCATGTCTCTGGGAAACCAGAGCAGCAACAACAATCTGATTGCAAGGCCTTTATTGCG 733
||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 710 TAGCATGTCTCTGGGAAACCACAGCAGCAACAACAATCTGGTTGCGAGGCCTTTATTGCG 769
Query 734 TAACCAGTCTACAGAACTTTTGCCACATCATGACCACAGTAACCAACCAAGCAGACAACA 793
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TAACCAGTCTACAGACCTTTTGCCACATCATGACCACAGTAACCAACCAAGCAGACAACT 829
Query 794 CTTCTCTTTTCACAAATCTCTCGATTTTTTCATCTCTTTCACCTCCAAGTTTCCGTTTGT 853
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTTCTCCTTTCACAAATCTCTTGATTTTTTCATCTCTTTCACCTCCAAGTTTCCGTTTGT 889
Query 854 GATCATCTTCCTTCTGATCGTATTCTTTGCTATACCTGGTAGCCTCATAATTCTTGCCCT 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GATCATCTTCCTTCTGATCGTATTCTTTGCTATACCTGGTAGCCTCATAATTCTTGCCCT 949
Query 914 TTACTTCCTCCTCACAATACTTTTCGCAGTTCCTGCTGGTCTGGTACTATATTTTGCTTA 973
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 950 TTACTTCCTCCTCACAATACTTTTCGCAGTTCCAGCTGGTCTTGTACTATATTTTGCTTA 1009
Query 974 CCCTATTCTAGAAAGGTTGGTGCATGAAATAACATCATCATGAGATTGGTTCTGAACTCA 1033
|||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 1010 TCCTATTCTAGAAAGGTTGGTAAATGAAATAACATCATCATGAGACTGGTGCTGAACTCA 1069
Query 1034 TGACTCCTATTATTGGTTGCTCGGCCCAGTCTGTGTGTTTGTAGTTTCATTATGGAACCC 1093
| |||||||||||||||||||||||||| |||| ||| |||||||| || ||||||||||
Sbjct 1070 TAACTCCTATTATTGGTTGCTCGGCCCATTCTGGGTGATTGTAGTT-CACTATGGAACCC 1128
Query 1094 TTTTTTAGCACTT-GGAGTCTTTGATGGTCGGAACTCAGAAGAAGTTTTTATGATTTGTG 1152
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1129 TTTTTTAGCACTTTGGAGCCTTTGATGGTCAGAACTCAGAAGAAGTTTTTATGATTTTTG 1188
Query 1153 GTAATTTTGCACATTTTTTAAAATATTATTTATTGCAAGCTTGGGCATTGTATTTGTGAT 1212
||| || ||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1189 GTAGTTCTGCACATTTCTTATAATATTGTTTATTGCAAGATTGAGCATTGTATTTGTGAT 1248
Query 1213 TTTGAACTCTTGGTTTTAGTATTGTGGTGCAACTGTCTAAAGTTTTGGTTTGCAGATTTG 1272
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1249 TTTGAACTCTTGGTTTTAGTATTGTTGTGCAACTGTCTAAAGTTTTGGTTTTCAGATTTG 1308
Query 1273 TGCCATAATGGATCACATGTGTGTTATCTCTCT 1305
|||||||||||||||||||||||||||||||||
Sbjct 1309 TGCCATAATGGATCACATGTGTGTTATCTCTCT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5