BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476061
Length=2088
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69340.1 | Symbols: | appr-1-p processing enzyme family pro... 3415 0.0
> AT1G69340.1 | Symbols: | appr-1-p processing enzyme family protein
| chr1:26065724-26069821 FORWARD LENGTH=2101
Length=2101
Score = 3415 bits (1849), Expect = 0.0
Identities = 2018/2098 (96%), Gaps = 18/2098 (1%)
Strand=Plus/Plus
Query 1 AAACGACAACTCAA-TTTTTGT-GTCGTAGCTGGTTTTGATGTTGT-GGCTACTTCATCG 57
|||||||||||||| ||||||| ||||||||||||||||||||| | | ||||||||||
Sbjct 10 AAACGACAACTCAATTTTTTGTCGTCGTAGCTGGTTTTGATGTT-TCCGATACTTCATCG 68
Query 58 ATCCACAGTTGTAGAAATTTGTTCTTGACATGAAGTTGAAATTCTGATTAGGCTCTTTCT 117
||||||||||||||||| || ||| |||||||||||||||||||||||||| |||| ||
Sbjct 69 ATCCACAGTTGTAGAAAATTCTTC--GACATGAAGTTGAAATTCTGATTAGGGTCTTCCT 126
Query 118 CGATTCGCTTTTGGTGAATCAAATTTCTTTAATTTCAGTGAATAAGCTTTTGACAGGAGC 177
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 127 CGATTCGCTTTTGGTGAATCAAATTTCTTTAATTTCAGTGAATACGCTTTTGACAGGAGG 186
Query 178 A-TATACTAAGTCTTGGGCAAACCCTCTTTATAGTGGGTTTGATCTACAATGATGTATCA 236
| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 187 ACCATACTAAGTCTTGGGAAAACCCTCTTCATAGTGGGTTTGATCTACAATGATGTATC- 245
Query 237 AG-CCATTCCCACGGCGGCAACCATTCGTGGTGGAACTCCAACAGAGAGTGGTGATTACG 295
|| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGACAATTCCCACGGCACCAACCATTCGTGGTGGAACTCCAACAGAGAGTGGTGATTACG 305
Query 296 TTGTTACTTTGGATCAGATTCCACGGTGGAGTGATGTTGAGCAGAGGTCATCTTTGGAGG 355
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 306 TTGTGACTTTGGATCAGATTCCACGGTGGAGTGATGTTGAGCAGAGATCATCTTTGGAGG 365
Query 356 GTGAAACAGGAGATCCTGCACATTCGAATCCACGGTATGCAAACCCTTTGGCTTCGTCTT 415
||| ||||||||||| | |||||||||||| || || ||||||||||||||||||||||
Sbjct 366 ATGAGACAGGAGATCCAGAACATTCGAATCCGCGCTACGCAAACCCTTTGGCTTCGTCTT 425
Query 416 CTGAAGCAGGGAGCAGCGGGAATGGGATGGTATCTAAGTTTCCTGTTGACCACGAGATAA 475
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 426 CCGAAGCAGGGAGCAGCGGGAATGGGATGGTATCTAAGTTTCCTGTTGATCACGAGATAA 485
Query 476 ACTCTAGAATATACCTGTGGAGAGGGGAACCTTGGAACCTTGAGGTTGATGCTGTTGTGA 535
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 486 ACTCTAGAATATACCTTTGGAGAGGGGAACCTTGGAACCTTGAGGTTGATGCTGTTGTAA 545
Query 536 ATTCGACAAATGAGAACTTGGATGAGGCACATAGCAGTCCTGGTCTACATGTGGCTGCTG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ATTCGACAAATGAGAACTTGGATGAGGCACATAGCAGTCCTGGTCTACATGTGGCTGCTG 605
Query 596 GACCTGGCCTTGCAGAGCAATGTGCTACATTGGGTGGATGCAGGACAGGGATGGCAAAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 606 GACCTGGCCTTGCAGAGCAATGTGCTACATTGGGTGGATGCAGGACAGGGATGGCGAAAG 665
Query 656 TAACAAATGCCTATGATCTACCAGCGAGGCGGGTTATCCACACAGTAGGACCCAAGTATG 715
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 666 TAACAAATGCCTATGATCTACCAGCGAGGAGGGTTATCCATACAGTAGGACCCAAGTATG 725
Query 716 CAGTAAAGTATCATACAGCTGCTGAGAATGCTCTAAGTCACTGCTATAGATCTTGTCTGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CAGTAAAGTATCATACAGCTGCTGAGAATGCTCTAAGTCACTGCTATAGATCTTGTCTGG 785
Query 776 AGCTTCTCATAGACAGTGGCCTTCAAAGTATCGCTATGGGCTGTATATACACAGAAGCCA 835
| ||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 786 AACTTCTCATAGATAGTGGGCTACAAAGTATCGCTCTGGGCTGTATATACACAGAAGCCA 845
Query 836 AAAACTATCCCCGAGAACCAGCTGCTCATGTTGCCATAAGAACTGTTCGCCGCTTTCTAG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 AAAACTATCCCCGAGAACCAGCTGCTCATGTTGCCATAAGAACTGTTCGCCGCTTTCTAG 905
Query 896 AAAAGCAAAAGGATAAAATCAGTGCCGTTGTTTTCTGTACCACCACATCCTCTGATACAG 955
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 906 AGAAGCAAAAGGATAAAATCAGTGCCGTTGTTTTCTGTACCACCACATCCTCTGATACGG 965
Query 956 AGATATACAAACGATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AGATATACAAACGATTACTTCCACTTTACTTTCCTCGAGATGAACATGAGGAAGAGGTTG 1025
Query 1016 CCATCTCAAAGCTTCCAGCTGATGTTGGAGATGAAAATGGTGAGACGGTTATAGACGAAC 1075
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CCATATCAAAGCTCCCGGCTGATGTTGGAGATGAAAATGGTGAGACGGTTATAGACGAAC 1085
Query 1076 GTAAAATCAGAATACAGGCGCTGCCAAATAAACCTTCACCCAGATCTTTTCCAACTCCAC 1135
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1086 GTAAAATCAGAATACAGGCGCTGCCAAATAAACCTCCACCCAGATCTTTTCCAACTCCAC 1145
Query 1136 TCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAGGAACTCGAATCATCTTGATTCGT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TCGAGCGCCCTTCTACTGATCTTACTTTGTTACGCAGGAACTCGAATCATCTTGATTCGT 1205
Query 1196 ATCTGGATCCTGCCTTCATGTCCTTGATTAAGGATCCAGATGAAAGGCGCAAAGAACAAT 1255
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATTTGGATCCTGCCTTCATGTCCTTGATTAAGGATCCAGATGAAAGGCGCAAAGAACAAT 1265
Query 1256 GGGAGAAGACTGCACAAGCACAAAGTGGATTCAATTTTGTTAAATTGCTAGGATTTGGTG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGGAGAAGACTGCACAAGCACAAAGTGGATTCAATTTTGTTAAATTGCTAGGATTTGGTG 1325
Query 1316 ATCTAGGAGGACCCCCTCTCTCTGCTGCAGAGGAATACTCACTTCATTCGCGATACCTAG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 ATCTAGGAGGACCCCCTCTCTCTGCTGCAGAGGAATACTCACTTCATTCGCGATACCTAG 1385
Query 1376 CGAAAGCTAATTCTCTCAACCTTTCCGAGATTGCAGAGATGAAAATTGTCTACCGTGGTG 1435
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1386 CGAAAGCTAATTCAATCAACCTTTCCGAGATTGCAGAGATGAAAATTGTCTATCGTGGTG 1445
Query 1436 GTGTTGACACCGAGGGTCATCCTGTAATGGTTGTTGTAGGAGCTCACTTTTTGCTGCGTT 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1446 GTGTTGACACCGAGGGTCATCCTGTAATGGTTGTTGTAGGAGCTCACTTTTTGCTGCGAT 1505
Query 1496 GTCTTGATCTGGAGCGTTTTGTGCTTTATGTTATAAAGGAATTTGAACCTGTGATACAAA 1555
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1506 GTCTTGATCTGGAGCGTTTTGTACTTTATGTTATTAAGGAATTTGAACCTGTGATACAAA 1565
Query 1556 AGCCTTACTCGATTGTCTATTTTCATTCTGCAGCATCTTTACAAGTCCAACCAGATTTGG 1615
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1566 AGCCTTATTCGATTGTCTACTTTCATTCTGCAGCATCGTTACAAGTCCAACCAGATTTGG 1625
Query 1616 GATGGATGAAAAGATTACAACAGATACTTGGTCGAAAACACCAGCGTAACCTTCAGGCAA 1675
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 GATGGATGAAAAGATTAGAACAGATACTTGGTCGAAAACACCAGCGTAACCTTCAGGCAA 1685
Query 1676 TCTATGTTCTTCATCCAACTTTTCACTTGAAGGCTACAATTTTAACTATGCAATTCTTCG 1735
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 1686 TCTATGTTCTTCATCCAACTTTCCACTTGAAGGCTACAATCTTAACGATGCAATTTTTCG 1745
Query 1736 TGGATAATGTGGTTTGGAAGAAAGTTGTATATGCAGACCGACTTCTGCAGCTGTTCAAAT 1795
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 TGGATAATGTGGTATGGAAGAAAGTTGTATATGCAGACCGACTTCTGCAGCTGTTCAAAT 1805
Query 1796 ATGTTCCTCGTGAGCAGCTGACAATCCCAGACTTTGTTTTCCAGCATGATCTTGAAGTTA 1855
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 ACGTTCCTCGTGAGCAGCTGACAATCCCAGACTTTGTTTTCCAGCATGATCTTGAAGTTA 1865
Query 1856 ACGGAGGAAAAGGTCTAATCGTTGATCCAAGAACAAAATACGTTTACCAACGGCCATGAA 1915
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1866 ACGGAGGAAAAGGTCTAATCGTTGACCCAAGAACAAAATACGTTTATCAACGGCCATGAA 1925
Query 1916 CCAAAATCAAAGACAGTTACTTTATTCAGTACTTGTATGTTTGCTTGTGCAATATTTCTT 1975
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1926 CCAAAATCAAAGACCGTTACTTTATTCAGTACTTGTATGTTTGCTTGTGAAATATTTCTT 1985
Query 1976 CATTCTTTCATGCTTATCTTCTTCTCAAGATGATCCTGGGAGCAAATAAAAGTCTTCTTC 2035
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 1986 CATTCTTTCATGCTTATCTTCT-C--AAGATGATCCTGGGAGCAAATAAA-GTCTTCTTC 2041
Query 2036 TTCT---AATGTAATCTAAAGTTTGAATCTTT--GTTTATAAATCCATTTTCTCAGCA 2088
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2042 TTCTTCTAATGTAATCTAAAGTTTGAATCTTTTTGTTTATAAATCCATTTTCTCAGCA 2099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103513523790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5