BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476065
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69380.1 | Symbols: | Protein of unknown function (DUF155) ... 1967 0.0
AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:2... 180 4e-44
> AT1G69380.1 | Symbols: | Protein of unknown function (DUF155)
| chr1:26081566-26083606 REVERSE LENGTH=1460
Length=1460
Score = 1967 bits (1065), Expect = 0.0
Identities = 1236/1317 (94%), Gaps = 18/1317 (1%)
Strand=Plus/Plus
Query 57 TTCAATTTTGATTTCTTTGAATGGGTAAATGGAGAGCAGTAGCTGCTCTTCTTCTTCGTA 116
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 TTCAATTTTGATTTCATTGAATGGGTAAATGGAGAGCAGTAGCTGCTCTTCTTCTTCGTA 215
Query 117 ATCAATTACTCAATTCTTCAAAAAGACTAAACC--T-TTCTTCTCCATATGTTTCGAAAC 173
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 216 ATCAATTACTCAATTCTTCAAAAAGACTAAACCTTTCTTCTTCTCCATGTGTTTCGAAAC 275
Query 174 ACCCCCCAGCGATTGGTTTAGCTTCTCGCTTTCTCGATTTCCGACACTTTTCAGCGTTCC 233
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 276 A---CCCAACGATTGGTTTAGCTTCTCGCTTTCTCAATTTCCGACACTTTTCAGCGTTCC 332
Query 234 CGTCTCCGATTTCGATTTACAACAATGATTCTGATTCTGGGTCTACTGATGCGTATCAAA 293
| |||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||
Sbjct 333 CTTCTCCGATTTCGATTTACAACAATGACTCTGATTCTGGGTCGAATGATGCATATCAAA 392
Query 294 ACTATGAATTTGGAACACATGAAGAAGAAGAACTAGGGAAAATCCCTATCAAAGCCTATT 353
||||||||||||||||| | | ||| |||| |||||| ||||||||||||||||||||||
Sbjct 393 ACTATGAATTTGGAACAGAGGCAGAGGAAGCACTAGGCAAAATCCCTATCAAAGCCTATT 452
Query 354 TTCTCAGTACTAGTATTGATTTGAAGGCAATGCAAGCTGAGAACTTATGCAATGTTGTTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TTCTCAGTACTAGTATTGATTTGAAGGCAATGCAAGCTGAGAACTTATGCAATGTTGTTC 512
Query 414 CTCCTACTTCACGTTCTACTAATTCTATTGCCCTCAAATTTTCGGATTTTACACCTTCTG 473
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 513 CTCCTACTTCACGTTCTACTAATTATATTGCCCTCAAATTTTCGGATTTTACCCCTTCTG 572
Query 474 GAATCCATACTATGGACGAGCGGGAGAGTGTAAGCAACTGCCGGTTCATGGTTGTTTTTC 533
||||| ||| | |||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 573 GAATCTATAGTTTGGACGAGAGGGAGAGTGTAAGCAACTGCAAGTTCATGGTTGTCTTTC 632
Query 534 AATACGGTTCTGCTATTCTTTTCAATGTTGATGATAATGATGTTGACCGTTATCTCGACA 593
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AATATGGTTCTGCTATTCTTTTCAATGTTGATGATAATGATGTTGACCGTTATCTCGACA 692
Query 594 TTGTTCGTAGACATGCTTCTGGATTGCTTACGGAAATGAGAAAAGATGATTATGCTGTGA 653
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 693 TTGTTCGTAGACATGCTTCTGGATTGCTTACAGAAATGAGAAAAGATGATTATGCTGTGA 752
Query 654 AGGAGAAGCCTTTGTTGACTGAGGAAATGAAAGGTGGCCATGACTACATCGTTCTCAAAA 713
|||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 753 AGGAGAAGCCTTTGCTGATTGAGGAAATGAAAGGTGGCCCTGACTACATTGTTCTCAAAA 812
Query 714 CTTTGGATACTAATAGCATACGTATAATTGGGAGTGTGCTCGGGCAAAGTATTGCATTGG 773
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 813 CTTTGGATACTAATAGCATCCGTATAATTGGGAGTGTGCTCGGACAAAGTATTGCTTTGG 872
Query 774 ATTACTTTGTTTCTCAGGTTAACAAGTTGGTGGAAGAGTTTGCCGATATAAACCGTGCAA 833
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 873 ATTACTCTGTTTCTCAGGTTAACAAGTTGGTGGAAGAGTTTGCTGATATAAACCGTTCAA 932
Query 834 TGGCGAAAACAGGAACTTTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGG 893
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TGGCGAAAACCGGAACATTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGG 992
Query 894 CAAATTCTAATCTAGGCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGATCCGAGATTG 953
| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 CGAATTCTAATATAGCCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGATCCGAGATTG 1052
Query 954 CTTGGAGAGAGGCTAGATATGCTCAGATATACGAGTACCTAAGAGAAGAGTACGAGGTCA 1013
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1053 CTTGGAGAGAAGCTAGATATGCTCAGATATACGAGTACCTAAGAGAAGAGTACGAGATCT 1112
Query 1014 CTCAGAGATTTGGAGATCTCGACTATAAGCTAAAGTTTATAGAGCACAACATTCATTTCC 1073
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CTCAGAGATTTGGGGATCTAGACTATAAGCTAAAGTTTATAGAGCACAACATTCATTTCC 1172
Query 1074 TCCAAGAGGTGCTGCAGAACCGACGATCAGATCTTTTAGAATGGTGCATTATCTTCTTAC 1133
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1173 TCCAAGAGGTGATGCAGAACCGACAATCAGATCTTTTAGAATGGTGCATTATCTTTTTAC 1232
Query 1134 TGACCATTGAAAACGCAATAGGCATTTACGAGATTCTTCGAGAATCCGCAGGAGCTTCAC 1193
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1233 TGGCCATTGAAAACGCAATAGGCATTTACGAGATTGTTCGAGAATCCGCAGGAGCTTCAC 1292
Query 1194 TCTGATGCTACAAAATTACAAGT-CATTGTAGAGAATTCAAAATTCTGTGAACTGAAGTT 1252
||||||||||||||| || || | |||||||| ||| ||||| ||| || | ||
Sbjct 1293 TCTGATGCTACAAAAGTATAAATTCATTGTAGTGAACTCAAA-TTC----AA--G---TT 1342
Query 1253 CATTTGTTTTGATTCTTCTGTAATAAAATCAACTTGACTCGCTAGCTTGCGCAGCTTATG 1312
||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1343 CATTTGTTTAGGTCCTTCTGTAATAAAATCAACTTGACTTGCTAGCTTGCGCAGCTTATG 1402
Query 1313 TCAACATTATGGTTTTTGGAAAT-TAGGATCAAAACAAATGTTATGCTTCCTTCTTT 1368
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 1403 TCAACATTATGGTTTTCGGAAAAATAGGATCAATACAAATGTTATGCTTCCTTCTTT 1459
Score = 99.0 bits (53), Expect = 1e-19
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 ATTTGATTAGGGAACTGTGGTCACCGGCGGCGAGAACCAAGGCTTCTTCGTAACCA 56
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ATTTGATTAGGGGACTGTGGTCACCGGCGGCGAGAACCAAGGCTTCTTCGTAACCA 65
> AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:26079956-26081727
FORWARD LENGTH=1261
Length=1261
Score = 180 bits (97), Expect = 4e-44
Identities = 114/122 (93%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 1248 AAGTTCATTTGTTTTGATTCTTCTGTAATAAAATCAACTTGACTCGCTAGCTTGCGCAGC 1307
|||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1222 AAGTTCATTTGTTTAGGTCCTTCTGTAATAAAATCAACTTGACTTGCTAGCTTGCGCAGC 1163
Query 1308 TTATGTCAACATTATGGTTTTTGGAAAT-TAGGATCAAAACAAATGTTATGCTTCCTTCT 1366
||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 1162 TTATGTCAACATTATGGTTTTCGGAAAAATAGGATCAATACAAATGTTATGCTTCCTTCT 1103
Query 1367 TT 1368
||
Sbjct 1102 TT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5