BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476068
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69400.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1537 0.0
> AT1G69400.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:26086961-26089020 FORWARD LENGTH=1225
Length=1225
Score = 1537 bits (832), Expect = 0.0
Identities = 1027/1117 (92%), Gaps = 29/1117 (3%)
Strand=Plus/Plus
Query 35 TCTGGG-TTGAAAAACATGAGCGGAGATCGACTTCAATTTGAAAACCCTATAGAAGATGC 93
|||||| ||| ||| |||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 53 TCTGGGTTTG--AAATATGAGCGGAGATAGACTTGAATTTGAAAACCCTATAGAGGATGC 110
Query 94 GGTTTCGAGACTCAGATTCTCCCCTGAATCAAACAATCTCCTCGTTGCTTCTTGGGATTC 153
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 111 GGTTTCGAGGCTCAGATTCTCCCCTCAATCAAACAATCTCCTCGTTGCTTCTTGGGATTC 170
Query 154 TTATCTGAGATTGTATAATGTGGAGAGCTCTTCGCTAAGTCTGGAATTGTACTCTCAAGC 213
|||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 171 TTATCTGAGATTGTATGATGTGGAGAGCTCTTCGCTAAGTCTTGAATTAAACTCTCAAGC 230
Query 214 TGCTCTTCTTGATTGTTGTTTCGAGAATGAATCAACTTCATTTACCTCTGGTTCCGATGG 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 231 TGCTCTTCTTGATTGTTGTTTCGAGAATGAATCAACTTCATTTACCTCTGGTTCTGATGG 290
Query 274 ATTCATCCGAAGGTATGATTTAAACGCTGGAACAGTTGATACAATTGGAAGACATGACGA 333
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 291 ATTCATCCGAAGGTATGATTTAAACGCTGGAACAGTTGATACAATTGGAAGGCATGATGA 350
Query 334 CATTGCAACATCCATTGTCTACTCTTATGAAAAAGGTGAAGTTATATCTACTGGGTTTGA 393
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 351 CATTTCAACATCCATTGTCTACTCTTATGAAAAAGGTGAAGTTATCTCGACTGGGTTTGA 410
Query 394 TGAGAAGATCAAATTCTGGGATACAAGAAAAAGAGAAAGTCTTGTGTTTTCGACTGATGC 453
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 TGAGAAGATCAAATTCTGGGATACAAGACAAAGAGAAAGTCTTGTGTTTTCGACTGATGC 470
Query 454 TGGTGCAGCAGTGGGTTGTATCACTGTATCTGGCAACAACTTAGTTGTTTGTGTGGACGC 513
||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 471 TGGTGGAGCAGTGGGATGTGTCACTGTATCTGGAAACAACTTAGTTGTTTGTGTGGACGC 530
Query 514 ATCGATGCATATATACGATTTACGTAACTTAGATGAAGCTTTTCAATCGTATGCATCCCA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATCGATGCATATATACGATTTACGTAACTTAGATGAAGCTTTTCAATCGTATGCATCCCA 590
Query 574 AGTGGAGGTGCCAATCAGTTGTATCACCTCTGTACCTTATTCCAGAGGATATGCAGTTGG 633
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AGTGGAGGTGCCAATCAGATGTATCACCTCTGTACCTTATTCCAGAGGATATGCAGTTGG 650
Query 634 GTCAGTTGATGGACAAGTAGCCGTAGATTTCTCGGATACGTCGTGCTCCAATGAGATAAA 693
|||||| || |||| |||||| || |||||| | |||| || ||||||| |||||| ||
Sbjct 651 GTCAGTAGACGGACGAGTAGCTGTGGATTTCCCCAATACATCATGCTCCAGTGAGATTAA 710
Query 694 ATACAGTTTCCGATGCCATCCCAAGTGTAGGAACGGCAGACTCGATGGTGTATGCATAAA 753
||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 711 ATACAGTTTCCGATGCCATCCCAAGAGTAGGAATGGAAGACTTGATGGTGTATGCATAAA 770
Query 754 TGCAATCGAATTCAGTCCATGTGGGTCAGGGACTTTCGTAACAGGAGACAACGAAGGCTA 813
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 771 TGCAATCGAATTCAGTCCATGTGGGTCAGGGACTTTTGTAACAGGTGACAATGAAGGATA 830
Query 814 CGTGATCTCATGGAATGCTAAAAGCAGAAGAAGACTCTTTGAGTTGCCAAGGTACTCAAA 873
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 831 CGTGATCTCATGGAATGCTAAAAGCAGAAGAAGACTCAATGAGTTGCCAAGGTACTCAAA 890
Query 874 TAGCATTGCGTCTTTAGCATTTAACCACACTGGAGAACTCTTGGCTATTGCATCAAGCCA 933
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 891 TAGCATCGCGTCTTTAGCATTTGACCACACTGGAGAACTCTTGGCCATTGCATCAAGCCA 950
Query 934 CACTTACCAAGAAGCTAAAGAGAATGAAGAAGAAGCTCCTCAAGTGTTCATACAAAGA-T 992
|||||||||||| ||||||||||| | |||||||||||||||||||||||||| || |
Sbjct 951 CACTTACCAAGATGCTAAAGAGAA-G--GAAGAAGCTCCTCAAGTGTTCATACACAGGCT 1007
Query 993 TCTGAAAGATTTGCTA-GCTTCTTGAATCTCAGTGTCTACTTGTATTGTATCTA-TCTAT 1050
| ||||||||| | || ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 1008 T-TGAAAGATTCG-TAAGCTTCTTGAATCTCAGTGTCTACTTGTATC-TATCTAGT-TAT 1063
Query 1051 TTTTT-GTTTATTTTATAGCTTGACAAGTT--AG-TTCTTCTCAGAACTGACT--T--CA 1102
||||| || | |||| | | | | || ||| || || |||||||||||||| | ||
Sbjct 1064 TTTTTTGTGTGTTTT-TGG-TAG-CACGTTTTAGCTTGATCTCAGAACTGACTCGTGTCA 1120
Query 1103 AC-A---TGCAATGATTGTATCTCTCAAGTCT-TTTA 1134
|| | || ||||||||||||||||| |||| ||||
Sbjct 1121 ACCAACATGTAATGATTGTATCTCTCACGTCTCTTTA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5