BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476072
Length=3066
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69440.1 | Symbols: AGO7, ZIP | Argonaute family protein | c... 4625 0.0
> AT1G69440.1 | Symbols: AGO7, ZIP | Argonaute family protein |
chr1:26101527-26105166 REVERSE LENGTH=3161
Length=3161
Score = 4625 bits (2504), Expect = 0.0
Identities = 2850/3015 (95%), Gaps = 31/3015 (1%)
Strand=Plus/Plus
Query 69 CTTTTCCTCTCAGCAGCCATGGAAGAAAAAACTCAGAGTCATCATCATCATCAGAGTACC 128
|||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||
Sbjct 133 CTTTTCCTCTCAGCAGCCATGGAAGAAAAAACTC--A-TCATCATCATCA-C--AGTACC 186
Query 129 AACAAACACAACCCCAATTCCAAATCAAGAACACCTCTTCTCCACAAGCCTTATCATCAT 188
|||||||||| ||| | ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 187 AACAAACACATCCCTAGTTCCAAATCAAGAACACCTCTTCTCCACAAGCC-T-T-ATCAT 243
Query 189 CACCATGTTCAAACCAATCCTCCTCCTTTTCTTTTGCACCCTTCTTCTCACCAAAACCTC 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CACCATGTTCAAACCAATCCTCCTCCTTTTCTTTTGCACCCTTCTTCTCACCAAAACCTC 303
Query 249 AATCTTGTTGCCTCAAATCTTCCTTCTAGctactactactattactactgctacttctac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AATCTTGTTGCCTCAAATCTTCCTTCTAGCTACTACTACTATTACTACTGCTACTTCTAC 363
Query 309 tCTCAATTTCACAActctcttcctcctcctcctcctc-t--tcttc--c-tctt-c-c-t 359
||||||||||||||||||||||||||||||||||||| | ||||| | |||| | | |
Sbjct 364 TCTCAATTTCACAACTCTCTTCCTCCTCCTCCTCCTCCTCATCTTCTTCCTCTTTCTCCT 423
Query 360 cctc--c-tcctttacttcctcttcctcctcctcACTCAATGACCCGTTTCCACAAATCT 416
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CCTCTTCCTCCTTTACTTCCTCTTCCTCCTCCTCACTCAATGACCCGTTTCCACAAATCT 483
Query 417 CTCCCTGTTTCTCAAGTTGTGGAGAGAAAGCAGCAACAACAGCAGAAGAAGAAGATACAA 476
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 484 CTCCCTGTTTCTCAAGTTGTGGAGAGAAAGCAGCAACACCAACAGAAGAAGAAGATACAA 543
Query 477 GTTTCTAACAACAAAGTGAGTGGGTCCATAGCAATAGAAGAAGCAGCATTAGTGGTTGCT 536
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 544 GTTTCTAACAACAAAGTGAGTGGATCCATAGCAATAGAAGAAGCAGCATTAGTGGTTGCT 603
Query 537 AAAAGACCTGACTTTGGTGGTCAAGAAGGTTCTGTCATTTATCTCCTCGCCAACCATTTT 596
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 AAAAGACCGGACTTTGGTGGTCAAGATGGTTCTGTCATTTATCTCCTCGCCAACCATTTT 663
Query 597 CTTGTCAAGTTTGATTCTTCACAGAGGATTTACCATTACAACGTTGAGATCTCTCCTCAG 656
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 664 CTTGTCAAGTTTGATTCGTCACAGAGGATTTACCATTACAATGTTGAGATATCTCCACAG 723
Query 657 CCTTCAAAGGAAATTGCTCGGATGATCAAACAGAAGCTTGTGGAGACCGAT-GTGAATAG 715
|||||||||||||||||| | |||||||||||||||||||| ||||| ||| || |||||
Sbjct 724 CCTTCAAAGGAAATTGCTAGAATGATCAAACAGAAGCTTGTTGAGACAGATCGT-AATAG 782
Query 716 TTTCTCCGGTGTTGTTCCCGCTTTTGATGGTAGGCAAAACATTTATAGTCCTGTGGAGTT 775
||||| ||||||||||| |||||||| || |||||||||||||| || |||||||||||
Sbjct 783 CTTCTCTGGTGTTGTTCCGGCTTTTGACGGCAGGCAAAACATTTACAGCCCTGTGGAGTT 842
Query 776 TCAGGGCGATAGGCTTGAGTTCTTTGTTAATCTCTCTATCCCATCTTGCAAGGGTGTAAT 835
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 843 TCAGGGAGATAGGCTTGAGTTCTTTGTTAATCTCCCTATCCCATCTTGCAAGGCTGTGAT 902
Query 836 GAATTACGGTGACTTGCGAGAGAAGCAACCTCAGAAGAAGATTGAGAAACTGTTTAGGGT 895
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAATTACGGTGACTTGCGTGAGAAGCAACCTCAGAAGAAGATTGAGAAACTGTTTAGGGT 962
Query 896 TAACATGAGGCTTGTGTCTAAGTTTGATGGGAAGGAACAGAGAAAGGAAGGAGAAGATTG 955
||| |||| ||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct 963 TAATATGAAGCTTGTGTCCAAGTTTGATGGTAAAGAACAGAGAAAGGAAGGAGAGGATTG 1022
Query 956 GGCTCCTCTGCCTCCAGAATACATTCATGCTCTTGATGTTATCTTGAGGGAGAATCCAAT 1015
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1023 GGCTCCTCTGCCTCCAGAATACATTCATGCTCTTGATGTTATCTTGAGAGAGAATCCAAT 1082
Query 1016 GGAGAAGTGTACGTCGATTGGAAGATCGTTTTACTCGAGTTCTATGGGTGGTTCCAAGGA 1075
|||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1083 GGAGAAGTGTACATCGATCGGAAGATCGTTTTACTCGAGTTCTATGGGTGGATCTAAGGA 1142
Query 1076 GATTGGAGGAGGAGCTGTTGGACTCAGAGGGTTTTTCCAGAGTCTTAGGCAGACTCAACA 1135
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1143 GATTGGAGGAGGAGCTGTTGGACTCAGAGGGTTTTTCCAGAGTCTTAGACATACTCAGCA 1202
Query 1136 AGGTTTAGCACTTAACATGGATCTCTCAATCACAGCTTTCCATGAAAGCATTGGAGTAAT 1195
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1203 AGGTTTAGCACTTAACATGGATCTCTCAATCACAGCTTTCCATGAAAGTATTGGAGTAAT 1262
Query 1196 AGCTTACTTGCAGAAGCGGCTCGAGTTTCTCAAGGACCTTTCTAGGAACAAAGATAGAGA 1255
|||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||
Sbjct 1263 AGCTTACTTGCAGAAGCGGCTCGAGTTTCTTACGGACCTTCCTAGGAACAAAGGTAGAGA 1322
Query 1256 ATTGAGCCTAGAGGAAAAGAGAGAAGTGGAGAAAGCACTTAAGAACATAAGAGTCTTTGT 1315
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 ATTGAGTTTAGAGGAAAAGAGAGAAGTGGAGAAAGCACTTAAGAACATAAGAGTCTTTGT 1382
Query 1316 TTGCCATAGAGAAACAGTTCAAAGGTATCGGGTTTACGGGTTAACAGAGGAGATTACCGA 1375
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1383 TTGCCATAGAGAAACAGTTCAAAGGTATCGAGTTTATGGGTTAACAGAGGAAATTACGGA 1442
Query 1376 TAATATATGGTTTCCGGATAGAGATGGGAAGA-A-CTTAAGGCTTATGAGCTACTTTAAA 1433
|||||||||||||| |||||||| ||||| | | || |||||||||||| ||||| |||
Sbjct 1443 GAATATATGGTTTCCTGATAGAGAAGGGAA-ATATCT-AAGGCTTATGAGTTACTTCAAA 1500
Query 1434 GATCATTATGGTTATGAGATTCAGTAT-AAGAACTTACCGTGTCTGCAAATCAGTAGGGC 1492
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 1501 GATCATTATGGTTATGAGATTCAGT-TCAAGAACTTGCCGTGTCTGCAAATCAGTAGGGC 1559
Query 1493 AAGACCTTGCTACCTTCCTATGGAACTATGTATGATCTGTGAAGGTCAAAAGTTTCTTGG 1552
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1560 AAGACCTTGTTACCTTCCTATGGAGCTATGCATGATTTGTGAAGGTCAAAAGTTTCTTGG 1619
Query 1553 GAAGCTTTCGGATGATCAAGCTGCAAAGATCATGAAAATGGGCTGCCAAAAACCAAATGA 1612
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1620 AAAGCTATCAGATGATCAAGCTGCAAAGATCATGAAAATGGGCTGCCAAAAACCTAATGA 1679
Query 1613 AAGGAAAGCTATTATTGATAAGGTTATGACAGGATTGGTCGGTCCATCGAGCGGAAACCA 1672
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1680 AAGGAAAGCTATTATTGATAAGGTTATGACAGGATCGGTCGGTCCATCGAGCGGAAACCA 1739
Query 1673 AACAAGAGAATTCAACCTCGAGGTTTCAAGAGAAATGACATTGCTGAAAGGAAGAATACT 1732
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AACAAGAGAATTCAACCTTGAGGTTTCAAGAGAAATGACATTGCTGAAAGGAAGAATACT 1799
Query 1733 TCAGCCTCCAAAGCTTAAACTTGACCGGCCAAGGAACCTTAAAGAAAGTAGAGCTTTTAA 1792
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1800 TCAGCCACCAAAGCTTAAACTTGACCGGCCAAGGAACCTTAAAGAAAGTAAAGTTTTTAA 1859
Query 1793 AGGAACCCGGATCGAGAGATGGGCTTTGATGAGTATTGGAGGCAGCTCGGATCAGAAATC 1852
|||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1860 AGGAACTAGAATTGAGAGATGGGCTTTGATGAGTATTGGAGGCAGCTCTGATCAGAAATC 1919
Query 1853 TACCATTCCCAAGTTCATAAACGAGCTCACTCAAAAGTGTGAGCATCTGGGAGTCTTCTT 1912
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1920 TACCATTCCCAAGTTCATAAACGAGCTTACTCAAAAGTGTGAGCATTTGGGAGTCTTCTT 1979
Query 1913 AAGCAAGAACACATTAAGCAGCACTTTCTTTGAACCATCACACATACTCAACAACATCTC 1972
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1980 AAGCAAGAACACATTAAGCAGTACCTTCTTTGAACCATCACACATACTCAACAACATTTC 2039
Query 1973 CCTTCTCGAATCGAAACTGAAGGAGATTCAAAGAGCGGCGTCCAACAATCTTCAGCTGAT 2032
||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 2040 GCTTCTCGAATCAAAACTGAAGGAGATTCAAAGAGCGGCATCGAACAATCTCCAGCTGAT 2099
Query 2033 TATCTGTGTAATGGAGAAAAAACATAAAGGGTACGGAGATCTAAAGCGAATAGCAGAGAC 2092
||| |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 2100 TATTTGTGTAATGGAGAAAAAACATAAAGGGTACGGAGATCTAAAGAGGATATCAGAGAC 2159
Query 2093 AAGAATTGGCGTTGTGACGCAATGCTGCTTATACCCTAACATCACTAAGCTCAGTTCTCA 2152
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 AAGAATTGGTGTTGTGACACAATGCTGCTTATACCCTAACATCACTAAGCTCAGTTCTCA 2219
Query 2153 GTTCGTTTCAAACTTAGCTCTCAAGATAAACGCCAAGATCGGCGGATCTATGACCGAGCT 2212
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2220 GTTCGTTTCGAACTTAGCTCTCAAGATAAACGCCAAGATCGGTGGATCCATGACCGAGCT 2279
Query 2213 CTACAACTCGATACCTTCTCACATCCCAAGACTACTTAGACCCGATGAGCCGGTTATCTT 2272
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2280 CTACAACTCGATACCTTCTCACATCCCTAGACTGCTTAGACCCGATGAGCCGGTTATCTT 2339
Query 2273 CATGGGAGCTGATGTAACGCATCCTCATCCATTCGATGACTGTAGCCCTTCAGTAGCGGC 2332
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2340 CATGGGAGCTGATGTAACGCATCCTCATCCATTCGATGATTGTAGCCCTTCAGTAGCGGC 2399
Query 2333 TGTGGTCGGGAGCATAAACTGGCCAGAAGCTAACAGATACGTCTCAAGAATGAGATCTCA 2392
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 2400 TGTGGTAGGGAGCATAAACTGGCCAGAAGCTAACCGATACGTCTCAAGAATGAGGTCTCA 2459
Query 2393 GACTCATAGGCAAGAGATCATTCAAGATCTTGACTTGATGGTCAAGGAACTTCTTGACGA 2452
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2460 GACTCATAGGCAAGAGATCATACAAGATCTTGACTTGATGGTCAAGGAACTTCTTGATGA 2519
Query 2453 TTTCTACAAAGCAGTCAACAAGCTTCCGAATCGAATCATATTCTTCAGAGACGGTGTGAG 2512
||| |||||||| || || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2520 TTTTTACAAAGCGGTAAAAAAGCTTCCGAATCGAATCATATTCTTCAGGGACGGTGTTAG 2579
Query 2513 CGAGACACAGTTCAAGAAAGTCCTCCAAGAAGAGCTTCAATCCATCAAAA-TCGCTTGCT 2571
||||||||||||||||||||| |||||||||||||||||||| || |||| | ||||| |
Sbjct 2580 CGAGACACAGTTCAAGAAAGTTCTCCAAGAAGAGCTTCAATCGATAAAAACT-GCTTGTT 2638
Query 2572 CTAAGTTCCAGGATTACAATCCAAGCATCACATTCGCCGTGGTCCAGAAAAGACACCACA 2631
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2639 CGAAGTTCCAAGATTACAATCCAAGCATCACATTCGCCGTGGTTCAGAAAAGACACCACA 2698
Query 2632 CAAGGCTGTTCCGGTGCAATCCAGACAATGAGAACATCCCTCCTGGCACAGTGGTTGATA 2691
||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||
Sbjct 2699 CAAGGCTGTTCCGGTGCGATCCAGACCATGAGAACATACCTCCTGGTACAGTGGTTGATA 2758
Query 2692 CAGTGATAACTCATCCGAAAGAGTTTGATTTCTATCTCTGTAGCCACTTAGGAGTGAAAG 2751
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 2759 CAGTGATAACTCATCCGAAAGAGTTTGATTTTTATCTCTGTAGCCATTTAGGAGTGAAGG 2818
Query 2752 GCACGAGCAGGCCAACGCATTACCACATCCTATGGGACGAAAACGAGTTTACTTCAGACG 2811
||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct 2819 GCACGAGCAGGCCAACGCATTACCATATTCTATGGGACGAGAACGAGTTCACTTCAGACG 2878
Query 2812 AATTGCAGAGACTTGTGTATAACTTGTGTTACACTTTCGTGAGGTGCACGAAACCTATTT 2871
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2879 AATTGCAGAGACTTGTGTATAATTTGTGTTACACTTTCGTGAGGTGCACGAAACCTATAT 2938
Query 2872 CGATTGTACCACCGGCTTATTATGCTCACCTTGCTGCGTACAGAGGAAGGCTCTACATCG 2931
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2939 CGATTGTGCCACCGGCTTATTATGCTCACCTTGCTGCGTACAGAGGAAGGCTATACATCG 2998
Query 2932 AGAGATCATCTGAATCTAATGGAGGATCCATGAATCCTTCTTCTGTGTCTCGAGTTGGTC 2991
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2999 AGAGATCATCTGAATCTAATGGAGGATCCATGAATCCTTCTTCTGTGTCTCGTGTTGGTC 3058
Query 2992 CTCCAAAGACGATTCCTCTCCCTAAATTAAGTGATAATGTCAAGAATCTCATGTTTTACT 3051
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3059 CTCCAAAGACGATTCCTCTTCCTAAATTAAGTGATAATGTCAAGAATCTCATGTTTTACT 3118
Query 3052 GCTGATTCTTTAATA 3066
|||||||||||||||
Sbjct 3119 GCTGATTCTTTAATA 3133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152457339777
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5