BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476076
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69490.1 | Symbols: NAP, ANAC029, ATNAP | NAC-like, activate... 1474 0.0
> AT1G69490.1 | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated
by AP3/PI | chr1:26122139-26123421 FORWARD LENGTH=1100
Length=1100
Score = 1474 bits (798), Expect = 0.0
Identities = 1001/1092 (92%), Gaps = 41/1092 (4%)
Strand=Plus/Plus
Query 17 AAAAC-ATCA-AGAAAG-aaaaaaaCAGCTCCTGTTCCATTAGATAT-TTCTTCTAAATT 72
||||| | || |||||| |||||||||| |||||||| ||||||| | || |||||||||
Sbjct 26 AAAACTAACACAGAAAGAAAAAAAACAGTTCCTGTTCTATTAGAT-TGTT-TTCTAAATT 83
Query 73 GTCTGAAAATCATGGAAGTAAATT-CCAGTTCTACTCTCCCTCCAGGATTCAGATTTCAT 131
||||||||||||||||||||| || ||| ||||| ||||||||||| ||||||||||||
Sbjct 84 GTCTGAAAATCATGGAAGTAACTTCCCA-ATCTACCCTCCCTCCAGGGTTCAGATTTCAT 142
Query 132 CCTACCGACGAAGAACTCATCGTCTACTATCTTCGAAACCAGACCATGTCTAAACCATGC 191
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 143 CCTACCGACGAAGAACTCATCGTTTACTATCTTCGAAACCAGACCATGTCTAAACCATGC 202
Query 192 CCTGTCTCCATCATCCCAGAAGTCGATATCTATAAATTCGACCCATGGCAATTACCTGAG 251
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 203 CCTGTCTCCATCATCCCAGAAGTTGATATCTACAAATTCGACCCATGGCAATTACCCGAG 262
Query 252 AAAACAGAGTTTGGAGAAAATGAGTGGTATTTCTTCAGCCCTAGAGAAAGAAAGTATCCA 311
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 263 AAAACAGAGTTTGGAGAAAATGAGTGGTATTTCTTCAGCCCTAGAGAAAGAAAATATCCA 322
Query 312 AACGGAGTCAGACCAAACCGGGCAGCTGTTTCCGGTTATTGGAAAGCAACCGGTACAGAC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 AACGGAGTCAGACCAAACCGGGCAGCTGTTTCCGGTTATTGGAAAGCAACCGGTACAGAC 382
Query 372 AAAGCCATTCACAGCGGTTCGAGTAACGTGGGTGTCAAGAAAGCTCTCGTCTTCTACAAA 431
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 383 AAAGCCATTCACAGCGGTTCAAGTAACGTAGGTGTCAAGAAAGCTCTAGTCTTCTACAAA 442
Query 432 GGTAGACCTCCTAAAGGAATCAAAACTGACTGGATCATGCATGAGTATCGTCTCCATGAT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GGTAGACCTCCTAAAGGAATCAAAACTGACTGGATCATGCATGAGTATCGTCTCCATGAT 502
Query 492 TCTCGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGTTAGATGAATGGGTATTGTGT 551
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 503 TCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGTTAGATGAATGGGTACTGTGT 562
Query 552 AGGATTTACAAGAAGAGAGGAGCAGGGAAGCTTCTGAATGAGCAAGAGGGTTTCATTGAC 611
||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 563 AGGATATACAAGAAGAGAGGAGCAAGTAAGCTTCTGAATGAGCAAGAGGGTTTCATGGAC 622
Query 612 GAAGTACTAATTGATGA-G-G-CAACAGTTGTTGTTAACGAAGCAGAGAGAAGAAATGAG 668
||||||||||| || || | | ||| |||||| |||||||||||||||||||||| |||
Sbjct 623 GAAGTACTAATGGAGGATGAGACAAAAGTTGTAGTTAACGAAGCAGAGAGAAGAACTGAA 682
Query 669 GAAGAGATAATGATGAATATGACGTCGACGAAACTTCCAAGGACGTGTTCGCTGGCTCAT 728
|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 683 GAAGAGATAATGATGA-T--GACGTCGATGAAACTTCCAAGGACGTGTTCGCTGGCTCAT 739
Query 729 TTGTTGGAAATGGATTACATGGGACCAGTCTCTCACATTTTCACGGATAACTTTACTCAG 788
|||||||||||||||||||||||||| |||||||||||| | |||| |||| ||||
Sbjct 740 TTGTTGGAAATGGATTACATGGGACCCGTCTCTCACATT-----G-ATAATTTTAGTCAG 793
Query 789 TTCGATCATATTCATCAACCTGATTCGGAGTCTGGATGGTTCGGGGATCTACAGTTTAAC 848
||||||||| ||||||||||||||||||||||| | ||||||||||| || |||||||||
Sbjct 794 TTCGATCATCTTCATCAACCTGATTCGGAGTCTAGTTGGTTCGGGGACCTTCAGTTTAAC 853
Query 849 CAAGACGAGATCTTAAACCATCATCGTCAAGCTATGTTTAAGTTCTAGTGATGGGTTTAG 908
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||
Sbjct 854 CAAGACGAGATCTTAAACCATCATCGTCAAGCGATGTTTAAGTTTTAGTGATGGGGTCAG 913
Query 909 TAAAAA-GATGT-G---CTTGGAA---TGT--T--AA---TTAATTTGTTAGATATTTTG 953
|||||| || | | | | || ||| | || ||| |||| ||||||||| |
Sbjct 914 TAAAAAAGAAGAAGAAACAAGAAAAGATGTGCTTGAAAAGTTACTTTGGTAGATATTTGG 973
Query 954 TTAGTTTGGGGACATGCAA-GAAAATTGTAAAATATTATAACTAAAACCCAATGGGATTT 1012
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TTAGTTTGGGTACATG-AATGAAAATTGTAAAATATTATAACTAAAACCCAATGGGATTT 1032
Query 1013 TATATTACTCCCATATGAATTAATGTGAAATGAAAAACAATGTTTAATTAAAAATTAAGT 1072
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1033 TATATTTCTCCCATATGAAT----GTGAAATGAAAAACAATGTTTAATTAAAAATTAAGT 1088
Query 1073 TGTTTCAGCATG 1084
||||||||||||
Sbjct 1089 TGTTTCAGCATG 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5