BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476077
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69500.1 | Symbols: CYP704B1 | cytochrome P450, family 704, ... 2643 0.0
> AT1G69500.1 | Symbols: CYP704B1 | cytochrome P450, family 704,
subfamily B, polypeptide 1 | chr1:26123940-26126057 FORWARD
LENGTH=1743
Length=1743
Score = 2643 bits (1431), Expect = 0.0
Identities = 1644/1743 (94%), Gaps = 29/1743 (2%)
Strand=Plus/Plus
Query 1 TTCAAAGAGGTAAAAAATGTCGTTGTGTTTGGTTATAGCTTGTATGGTAACATCATGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTCAAAGAGGTAAAAAATGTCGTTGTGTTTGGTTATAGCTTGTATGGTAACATCATGGAT 64
Query 61 CTTCTTGCACCGATGGGGACAAAGGAACAAGAGTGGTCCAAAGACTTGGCCTTTGGTTGG 120
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 65 CTTCTTACACCGATGGGGACAAAGAAACAAGAGTGGTCCAAAGACTTGGCCTTTGGTTGG 124
Query 121 AGCCGCGATCGAACAGTTGACCAATTTTGATCGAATGCACGATTGGCTCGTTGAGTATCT 180
||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 125 AGCAGCGATCGAACAGTTAACTAATTTTGATCGAATGCATGATTGGCTCGTTGAGTATCT 184
Query 181 TTATAACTCAAGAACAGTAGTGGTTCCAATGCCATTCACCACTTATACATACATAGCTGA 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 185 TTATAACTCAAGAACAGTAGTGGTTCCAATGCCATTCACTACTTATACATACATAGCTGA 244
Query 241 TCCCATCAATGTTGAATATGTCCTCAAAACCAACTTCTCCAATTACCCAAAGGGAGAGAC 300
||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 245 TCCCATCAACGTTGAATATGTCCTGAAAACAAACTTCTCCAATTACCCCAAGGGAGAGAC 304
Query 301 TTACCATTCATACATGGAGGTTCTT-TTGGGAGATGGGATTTTCAATTCAGATGGAGAGC 359
||| ||||| || ||||| | | || ||||||||||||||||||||||| ||||||||||
Sbjct 305 TTATCATTCTTATATGGAAG-TATTGTTGGGAGATGGGATTTTCAATTCTGATGGAGAGC 363
Query 360 TTTGGAGGAAACAGAGGAAAACCGCGAGTTTCGAATTTGCTTCCAAGAATCTCAGAGATT 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 364 TTTGGAGGAAACAGAGAAAAACCGCGAGTTTCGAATTTGCTTCCAAGAATCTTAGAGATT 423
Query 420 TTAGTACTGTAGTGTTTAAAGAGTATAGTCTCAAGCTCTTCAATATCCTTTCCCAAGCAT 479
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 424 TTAGTACTGTAGTGTTTAAAGAGTATAGTCTTAAACTCTTCACTATCCTTTCCCAAGCAT 483
Query 480 CTTTCAAAAACCAACAAGTAGATATGCAGGAATTGTTGTTGAGAATGACTTTGGACTCCA 539
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 484 CTTTCAAAGAGCAACAAGTAGATATGCAGGAATTGTTGATGAGAATGACTTTGGATTCAA 543
Query 540 TATGTAAAGTTGGATTTGGTGTAGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATC 599
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 544 TATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATC 603
Query 600 ACTTTGCTAAGGCTTTCGATACCGCTAATATAATCGTAACACTTCGTTTCATAGATCCTC 659
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 604 ACTTTGCTAAGGCTTTTGATACCGCAAATATAATCGTAACACTTCGTTTCATAGATCCTC 663
Query 660 TCTGGAAGTTGAAAAAGTTCCTTAACATAGGCTCTGAGGCATTGCTTGGTAAAAGCATAA 719
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTTGGAAGATGAAAAAGTTCCTTAACATAGGCTCTGAGGCATTGCTTGGTAAAAGCATAA 723
Query 720 AAGTCGTCAATGATTTCACTTATTCAGTCATAAGAAGAAGGAAAGCAGAGTTATTAGAGG 779
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AAGTAGTCAATGATTTCACCTATTCAGTCATAAGAAGAAGGAAAGCAGAGTTATTAGAGG 783
Query 780 CACAGAA-ATCTCCT----------AC--CAACAACAAC-AC--GGTGAAGCACGATATA 823
|||| || ||||||| || |||||||||| || ||||||||||||||||
Sbjct 784 CACA-AATATCTCCTACCAACAACAACAACAACAACAACAACAAGGTGAAGCACGATATA 842
Query 824 CTCTCAAGGTTTATCGAGATCAGCGACGATCCAGATAGCAAAGAAACAGAGAAAAGCCTA 883
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 843 CTCTCGAGGTTTATCGAGATCAGTGACGATCCAGATAGCAAAGAAACAGAGAAAAGCCTA 902
Query 884 AGAGATATTGTCCTCAACTTTGTAATAGCTGGAAGAGATACAACAGCAACAACTGTCACT 943
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 903 AGAGATATTGTCCTCAACTTTGTAATAGCTGGAAGAGATACAACAGCAACAACTCTCACT 962
Query 944 TGGGCTATATACATGATAATGATGAATGAAAATGTTGCTGAGAAACTATACTCAGAGCTA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGGCTATATACATGATAATGATGAATGAAAATGTTGCTGAGAAACTATACTCAGAGCTA 1022
Query 1004 AAAGAACTCGAAAAAGAAAGCGCAGAA-CAGACTAATACATCGTTGCATCAATACGATAC 1062
|||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 1023 CAAGAACTCGAAAAAGAAAGCGCGGAAGC-GACTAATACATCGTTGCATCAATACGATAC 1081
Query 1063 AGAGGATTTCAGTTCCTTCAACGAGAGGGTAAC-GCAATTCGCAGGACTACTAAACTACG 1121
||||||||||| |||||||||||||| |||||| | |||||||||||||| | |||||||
Sbjct 1082 AGAGGATTTCAATTCCTTCAACGAGAAGGTAACAG-AATTCGCAGGACTATTGAACTACG 1140
Query 1122 ATTCCTTAGGAAAACTTCACTACTTACATGCTGTGATAACAGAAACACTTCGTCTCTACC 1181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 ATTCCTTAGGAAAACTTCACTACTTACATGCTGTGATCACAGAAACACTTCGTCTCTACC 1200
Query 1182 CTGCAGTTCCTCAGGATCCGAAAGGAGTATTAGAAGATGATATGTTACCAAATGGAACAA 1241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1201 CTGCCGTTCCTCAGGATCCGAAAGGAGTATTAGAAGATGATATGTTACCAAATGGGACAA 1260
Query 1242 AAGTAAAAGCTGGAGGGATGGTTACATATGTGCCTTACTCAATGGGTCGTATGGAATACA 1301
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1261 AAGTAAAAGCTGGAGGGATGGTCACATATGTACCTTACTCAATGGGTCGTATGGAATACA 1320
Query 1302 ACTGGGGATCAGATGCAGCATTGTTTAAACCCGAAAGATGGCTTAAAGATGGAATCTTTC 1361
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 ATTGGGGATCAGATGCAGCATTGTTTAAACCCGAAAGATGGCTTAAAGATGGAGTCTTTC 1380
Query 1362 AGAATGCATCACCATTCAAGTTCACAGCTTTTCAGGCTGGACCAAGGATATGTTTGGGAA 1421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAAATGCATCACCATTCAAGTTCACAGCTTTTCAGGCTGGACCAAGGATATGTTTGGGAA 1440
Query 1422 AGGATTCAGCTTATCTTCAAATGAAGATGGCAATGGCAATACTTTGCAGATTCTATAAGT 1481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGGATTCAGCTTATCTGCAAATGAAGATGGCAATGGCAATACTTTGCAGATTCTATAAGT 1500
Query 1482 TTCATTTGGTGCCAAATCATCCTGTCAAGTATCGGATGATGACGATCTTATCCATGGCTC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTCATTTGGTGCCAAATCATCCTGTCAAGTATCGGATGATGACGATCTTATCCATGGCTC 1560
Query 1542 ATGGTTTGAAGGTTACTGTATCCAGACGTTCGGAGGGaaaaaaa-aaaaaaaaaaaaaaa 1600
|||| |||||||||||||||||||||||||| || | | | | |||||||||||||||
Sbjct 1561 ATGGCTTGAAGGTTACTGTATCCAGACGTTCATAGACACACACACAAAAAAAAAAAAAAA 1620
Query 1601 CTATACGAAGTCAAATCCATGTGAAATGTTCCAAGAAGAGATATAA--A---TCTTTATA 1655
|||||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||||
Sbjct 1621 CTATACAAAGTCAAATCCATTTGAAATGATCCAAGAAGAGATATAATTAAAATCTTTATA 1680
Query 1656 ACTATTTTGTTCTCAAACTACTCAATAAGATCGATTTTATAGATCAAACAACAATTGTGA 1715
||||| ||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 1681 ACTATCTTGTTCTAAAACTTCTCCATAAGATAAATTTTATAGATCAAACAACAATTGTGA 1740
Query 1716 GGC 1718
|||
Sbjct 1741 GGC 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84939322140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5