BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476086
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69530.3 | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP A... 1964 0.0
AT1G26770.2 | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPH... 520 2e-146
AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1... 370 2e-101
> AT1G69530.3 | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP
ALPHA 1.2, EXPA1 | expansin A1 | chr1:26141836-26143496 FORWARD
LENGTH=1322
Length=1322
Score = 1964 bits (1063), Expect = 0.0
Identities = 1243/1327 (94%), Gaps = 23/1327 (2%)
Strand=Plus/Plus
Query 1 CCAATTCTAAACCAAACAACATATTCTCACAATCATCTCTTCTTTTATT-CTCTTTAAGA 59
||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||
Sbjct 1 CCAATTCTAAACCAAACAACAGATTCTCATAATCATCTCTTCTTTT-TTCCTCTTTACGA 59
Query 60 AAGGAAGAGAGATCAAAGCTTCCAAGTAATCATTTTC-TT-TCTCTCT--CACATATACA 115
|| ||||| |||||||| ||||||||||||||||||| || ||||||| |||| | |||
Sbjct 60 AAAGAAGAAAGATCAAACCTTCCAAGTAATCATTTTCTTTCTCTCTCTCACACACACACA 119
Query 116 TTCACTAGTTTTAGCTTCACAAAATGTGATCTAACTTCATTTACCTATGTGCAGGTTTAC 175
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TTCACTAGTTTTAGCTTCACAAAATGTGATCTAACTTCATTTACCTATATGCAGGTTTAC 179
Query 176 ACAAAACGAAAAAAGAACCATGGCTCTTGTCACCTTCTTGTTTATAGCTACCCTAGGAGC 235
|||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 180 ACAAAAAGAAAAAAGAACGATGGCTCTTGTCACCTTCTTGTTTATTGCTACCCTTGGAGC 239
Query 236 AATGACGTCACATGTCAACGGCTACGCCGGAGGAGGTTGGGTCAACGCACACGCCACATT 295
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 240 AATGACGTCACATGTCAATGGTTACGCCGGAGGAGGTTGGGTCAACGCACACGCCACATT 299
Query 296 CTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGTGCTTGTGGTTACGGAAACCTATA 355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGTGCTTGTGGATACGGAAACCTATA 359
Query 356 TAGCCAAGGCTATGGAACCAACACCGCAGCGCTAAGCACGGCTTTGTTCAACAACGGTTT 415
|||||||||||||||||||||||| || ||||||||||||||| | ||||| || ||| |
Sbjct 360 TAGCCAAGGCTATGGAACCAACACGGCGGCGCTAAGCACGGCTCTATTCAATAATGGTCT 419
Query 416 AAGTTGTGGTGCTTGCTTCGAGATAAGATGCCAAAACGATGGAAAATGGTGTCTCCCTGG 475
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 AAGTTGTGGTGCTTGCTTCGAGATAAGATGTCAAAACGATGGAAAATGGTGTCTTCCTGG 479
Query 476 CTCAATTGTCGTCACAGCCACAAACTTTTGCCCGCCTAACAACGCGTTACCGAACAACGC 535
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 480 CTCAATTGTCGTCACAGCCACAAACTTTTGCCCTCCTAACAACGCCTTACCGAACAACGC 539
Query 536 AGGAGGTTGGTGTAACCCTCCTCAGCAACATTTTGATCTCTCTCAGCCCGTATTTCAACG 595
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 AGGAGGTTGGTGTAACCCTCCTCAGCAGCATTTTGATCTCTCTCAGCCCGTATTTCAACG 599
Query 596 TATCGCTCAATACAGAGCCGGCATTGTTCCCGTCGCTTACCGAAGAGTGCCATGCGTGAG 655
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 600 CATCGCTCAATACAGAGCCGGCATTGTCCCCGTCGCTTACCGAAGAGTGCCGTGCGTGAG 659
Query 656 AAGAGGAGGAATAAGGTTTACGATAAACGGACACTCTTACTTCAACTTAGTTCTTATTAC 715
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 660 AAGAGGAGGAATAAGGTTTACGATAAACGGACACTCTTACTTCAACCTAGTTCTGATCAC 719
Query 716 TAACGTCGGAGGAGCCGGAGATGTTCACTCAGTGATGGTTAAGGGTTCAAGAACAGGATG 775
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 720 TAACGTCGGAGGAGCCGGAGATGTTCACTCAGCGATGGTTAAAGGTTCAAGAACTGGATG 779
Query 776 GCAAGCTATGTCAAGAAACTGGGGACAGAACTGGCAGAGTAACTCTTACCTAAACGGACA 835
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 GCAAGCGATGTCAAGAAACTGGGGACAGAACTGGCAGAGTAACTCTTACCTTAACGGACA 839
Query 836 ATCTCTCTCATTCAAAGTCACCACAAGCGATGGTCGAACCACTGTCTCTAACAACGTGGC 895
|||||||||||||||||| || ||||||||||| | ||||| ||||||||||||||| ||
Sbjct 840 ATCTCTCTCATTCAAAGTTACAACAAGCGATGGCCAAACCATTGTCTCTAACAACGTTGC 899
Query 896 TAACGCAGGCTGGTCTTTCGGCCAGACCTTCACCGGAGCA-CAGT-A-A-AG-GGGGCAT 950
||||||||||||||||||||||||||||||||| | || | |||| | | || |||||||
Sbjct 900 TAACGCAGGCTGGTCTTTCGGCCAGACCTTCACAGTAGAAGCAGTTAGAGAGAGGGGCAT 959
Query 951 GATAGTAATTTGGTTCTTTCTTTCAATTGAGGTTTACCTAAAA-GAAGTGGTGCTTCGAG 1009
|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 960 GATAGTAATTTGGTCCTTTCTTTCAATTGAGGTTAACCTAAAAAGAAGTGGTGCTTCGAG 1019
Query 1010 TGCTTGATTTTGCACGAGGCCTTGATGGTGTCATCTTTTAGGAACCTTTTCTTATCTTTC 1069
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1020 TGCTTGATTTTGCACGAGGCCTTGATGATGTCATCTTTTGGGAACCTTTTCTTATCTTTC 1079
Query 1070 TTCATTTTTATTGGTAAGGTTTTATGTTATACTGATGCAGAGGTGGTCTTAAGTTTAAGT 1129
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1080 TTCATTTTTATTGGTAAGGTTTTATGTTATACTGATGCAGAGGTGGTATTGAGTTGAAGT 1139
Query 1130 ACCACCCGCtagtagtagtagtagtagtCTCTCATGTACTCATTTGTATCCCTTCTCGAA 1189
||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||
Sbjct 1140 ACCACCCGCTAGTAGTAGTAGTAGT---CTCTCGTGT-C--ATTTGTATCCCTTCTCGAA 1193
Query 1190 GCGAGAGGGAGAGTTTTAGATTGTATTAATCTCGTTAAAGTCATCATGTATGTTGTAAAT 1249
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1194 GCGAGAGGGAGAGTTTTAGATTTTATTAATCTCGTTAAAGTCATT-TGTATGTTGTAAAT 1252
Query 1250 TTTTCAATTTCTACAAGTAATGAA-TGTTGGGGATTTGTTA-T-ATATACTTTGTGTAAT 1306
|||||||||||||||||||| ||| | |||| |||||||| | ||||||||||||||||
Sbjct 1253 TTTTCAATTTCTACAAGTAA-GAAATATTGGAGATTTGTTTGTTATATACTTTGTGTAAT 1311
Query 1307 AAATTAT 1313
|||||||
Sbjct 1312 AAATTAT 1318
> AT1G26770.2 | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA
1.1, EXP10, EXPA10 | expansin A10 | chr1:9259750-9260792
FORWARD LENGTH=805
Length=805
Score = 520 bits (281), Expect = 2e-146
Identities = 557/689 (81%), Gaps = 24/689 (3%)
Strand=Plus/Plus
Query 263 CGGAGGAGGTTGGGTCAACGCACACGCCACATTCTACGGTGGTGGTGATGCTTCCGGCAC 322
||| || |||||| ||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 121 CGGTGGCGGTTGGATCAACGCTCACGCCACTTTTTACGGTGGTGGTGATGCTTCCGGCAC 180
Query 323 AATGGGAGGTGCTTGTGGTTACGGAAACCTATATAGCCAAGGCTATGGAACCAACACCGC 382
|||||| ||||||||||| || || || ||||||||||||||||| || || | ||| ||
Sbjct 181 AATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACGAGCACGGC 240
Query 383 AGCGCTAAGCACGGCTTTGTTCAACAACGGT-TTAAGTTGTGGTGCTTGCTTCGAGATAA 441
|| |||||||| ||| | |||||||| || ||| | |||||| ||||||| |||||||
Sbjct 241 GGCTCTAAGCACAGCTCTCTTCAACAATGGACTTA-GCTGTGGTTCTTGCTTTGAGATAA 299
Query 442 GATGCCAAAACGATGGAAAATGGTGTCTCCCTGGCTCAATTGTCGTCACAGCCACAAACT 501
|||| |||||||||| ||||||||| | ||||||||||| || || || || |||||||
Sbjct 300 GATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAAACT 359
Query 502 TTTGCCCGCCTAACAACGCGTTACCGAACAACGCA-GGAGGTTGGTGTAACCCTCCTCA- 559
| |||||||| || ||||||||| ||||||| | || ||||||||||| |||||||
Sbjct 360 TCTGCCCGCCAAATAACGCGTTAGCGAACAATA-ATGGCGGTTGGTGTAATCCTCCTCTT 418
Query 560 GCAACATTTTGATCTCT-CTCAGCCCGTATTTCAACGTATCGCTCAATACAGAGCCGGCA 618
| |||| ||||| || | ||||||| || |||||||| || ||||| |||||||| || |
Sbjct 419 G-AACACTTTGACCT-TGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAA 476
Query 619 TTGTTCCC-GTCGCTTACCGAAGAGTGCCATGC-GTGAGAAGAGGAGGAATAAGGTTTAC 676
| || ||| || | ||| |||| || || ||| | |||||||||||||||||| || ||
Sbjct 477 TCGT-CCCTGTTTCCTACAGAAGGGTTCCTTGCAG-GAGAAGAGGAGGAATAAGATTCAC 534
Query 677 GATAAACGGACACTCTTACTTCAAC-TTAGTTCTTATTACTAACGTCGGAGGAGCCGGAG 735
||||||||| ||||| ||||||||| || || || || || |||||||| || |||||||
Sbjct 535 GATAAACGGCCACTCATACTTCAACCTT-GTGCTGATCACAAACGTCGGTGGTGCCGGAG 593
Query 736 ATGTTCACTCAGTGATGGTTAAGGGTTCAAGAACAG-GATGGCAAGCTATGTCAAGAAAC 794
| |||||||| | | | | |||||||||||||||| | ||||||||||||||||| |||
Sbjct 594 ACGTTCACTCGGCGGCGATCAAGGGTTCAAGAACAGTG-TGGCAAGCTATGTCAAGGAAC 652
Query 795 TGGGGACAGAACTGGCAGAGTAACTCTTACCTAAACGGACAATCTCTCTCATTCAAAGTC 854
||||| || || ||||| || ||||||||||| ||||| ||| | || || || || |||
Sbjct 653 TGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTC 712
Query 855 ACCACAAGCGATGGTCGAACCACT-GTCTC-TAACAACGTGGCTAAC-GCAGGCTGGTCT 911
||||| ||||| || || || | | ||||| | ||||| ||| | || |||||||||
Sbjct 713 ACCACCAGCGACGGCCGCAC-AGTTGTCTCCTT-CAACGCCGCTC-CTGCCGGCTGGTCT 769
Query 912 T-TCGGCCAGACCTTCACCGGAGCACAGT 939
| | |||||||| || |||| | |||||
Sbjct 770 TAT-GGCCAGACTTTTGCCGGTGGACAGT 797
> AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA
1.3, EXPA15 | expansin A15 | chr2:916854-918643 REVERSE LENGTH=1358
Length=1358
Score = 370 bits (200), Expect = 2e-101
Identities = 524/677 (77%), Gaps = 36/677 (5%)
Strand=Plus/Plus
Query 273 TGGGTCAACGCACACGCCACATTCTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGT 332
|||||||| || || || || ||||| ||||| |||||||||| || |||||||| ||
Sbjct 177 TGGGTCAATGCTCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGA 236
Query 333 GCTTGTGGTTACGGAAACCTATATAGCCAAGGCTATGGAACCAACACCGCAGCGCTAAGC 392
|||||||| ||||| ||||| || || ||||| || || |||||||| || ||| | |||
Sbjct 237 GCTTGTGGCTACGGGAACCTCTACAGTCAAGGTTACGGGACCAACACGGCGGCGTTGAGC 296
Query 393 ACGGCTTTGTTCAACAACGGT-TTAAGTTGTGGTGCTTGCTTCGAGAT-AAGATGCCAAA 450
|| ||| |||||||||||||| || || || || ||||| || ||||| ||| || || |
Sbjct 297 ACTGCTCTGTTCAACAACGGTCTT-AGCTGCGGGGCTTGTTTTGAGATCAAG-TGTCAGA 354
Query 451 ACGATGGAAAATGGTGTCTCCCTGGCT-CAATTGTCGTCACAGCCACAAACTTT-TGCCC 508
||| || |||||| | ||||| | | || | ||||||||||| || ||| || ||
Sbjct 355 GCGACGGCGCGTGGTGTTTACCTGG-TGCTATCATTGTCACAGCCACCAA-TTTCTGTCC 412
Query 509 GCCTAACAACGCGT-TACCGAACAACGCAGGAGGTTGGTGTAACCCTCCTCAGCAACATT 567
||||||||||| | | || || ||||| || ||||||||||||||||| | || ||||
Sbjct 413 TCCTAACAACGC-TCTTCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATT 471
Query 568 TTGATCTCTCTCAGCCCGTATTTCAACGTATCGCTCAATACAGAGCCGGCATTGTTCCC- 626
| |||||||||||||| || |||||||| || ||||| |||| ||| || ||| ||||
Sbjct 472 TCGATCTCTCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAAAGCTGGTGTTG-TCCCT 530
Query 627 GTCGCTTACCGAAGAGTGCCATGCGTGAGAAGAGGAGGAATAAGGTTTACGATAAACGGA 686
|| | ||| |||| || || || ||||||||||||| ||||| || || || |||||
Sbjct 531 GTTTCCTACAGAAGGGTTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGT 590
Query 687 CACTCTTACTTCAA-CTTAGTTCTT-ATTACTAACGTCGGAGGAGCCGGAGATGTTCACT 744
|||||||||||||| ||| | |||| | || || || || || || ||||||||||| |
Sbjct 591 CACTCTTACTTCAACCTT-G-TCTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATT 648
Query 745 CAG-TGATGGTTAAGGGTTCAAGAAC-AGGATGGCAAGC-TATGTCAAGAAACTGGGGAC 801
| | || |||||| ||||| ||||| ||| |||||| | |||||||||||||||||||
Sbjct 649 CGGTTG-CGGTTAAAGGTTCTAGAACAAGG-TGGCAA-CAAATGTCAAGAAACTGGGGAC 705
Query 802 AGAACTGGCAGAGTAAC--TCTTACCTAAACGGACAATC-TCTCTCATTCAAAGTCACCA 858
|||||||||| || ||| ||| | ||||||| ||| | | | ||||| || || ||
Sbjct 706 AGAACTGGCAAAGCAACAATCT--CTTAAACGGTCAAGCAT-TGTCATTTAAGGTGACTG 762
Query 859 CAAGCGATGGTCGAACCA-CTGTCTCTAACAACGTGGCTA-ACGC-AGGCTGGTC-TTTC 914
| || |||||||| ||| | |||||||||||| | ||| | || || ||||| |||
Sbjct 763 CTAGTGATGGTCGTACCGTC-GTCTCTAACAACATTGCTCCA-GCTAGT-TGGTCCTTT- 818
Query 915 GGCCAGACCTTCACCGG 931
|| || |||||||||||
Sbjct 819 GGACAAACCTTCACCGG 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5