BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476090
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69560.1 | Symbols: MYB105, LOF2, ATMYB105 | myb domain prot... 1628 0.0
AT1G26780.2 | Symbols: MYB117, AtMYB117, LOF1 | myb domain prot... 429 3e-119
> AT1G69560.1 | Symbols: MYB105, LOF2, ATMYB105 | myb domain protein
105 | chr1:26157755-26159094 FORWARD LENGTH=1181
Length=1181
Score = 1628 bits (881), Expect = 0.0
Identities = 997/1054 (95%), Gaps = 4/1054 (0%)
Strand=Plus/Plus
Query 1 ATGTCGGAAGATCAACACCGTTGGATGGATCAGATTGCTTCATCGGACTACTTCTCTTTA 60
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 109 ATGTCGGAAGATCAACACCATTCGATGGATCAGACCACTTCATCGGACTACTTCTCTTTA 168
Query 61 AACATCGACAACGATCAACATCTCCGTAGCTACTACACAAGTCATAGAGAAGAAGAGAGG 120
|| |||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 169 AATATCGACAATGCTCAACATCTCCGTAGCTACTACACAAGTCATAGAGAAGAAGACATG 228
Query 121 AACCCTAATCAAAGTGATTACAGTAACTGCAACAAGAAAGATACAACAGTCTATGGAAGC 180
|||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 229 AACCCTAATCTAAGTGATTACAGTAATTGCAACAAGAAAGACACAACAGTCTATAGAAGC 288
Query 181 TGTGGACACTCGTCAAAAGCTTCGGTGTCGAGAGGACATTGGAGACCAGCTGAAGATACC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 289 TGTGGACACTCGTCAAAAGCTTCGGTGTCTAGAGGACATTGGAGACCAGCTGAAGATACT 348
Query 241 AAGCTCAAAGAACTAGTCGCTGTCTACGGCCCACAAAACTGGAACCTCATAGCTGAAAAG 300
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 349 AAGCTCAAAGAACTAGTCGCCGTCTACGGTCCACAAAACTGGAACCTCATAGCTGAGAAG 408
Query 301 CTCCAAGGAAGATCCGGGAAAAGCTGTAGACTTCGATGGTTTAACCAACTAGACCCGAGG 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 409 CTCCAAGGAAGATCCGGGAAAAGCTGTAGGCTTCGATGGTTTAACCAACTAGACCCAAGG 468
Query 361 ATAAATAGAAGAGCCTTTACAGAGGAAGAAGAAGAGAGGCTAATGCAAGCTCATAGGCTT 420
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 469 ATAAATAGAAGAGCCTTCACTGAGGAAGAAGAAGAGAGGCTAATGCAAGCTCATAGGCTT 528
Query 421 TATGGTAACAAATGGGCGATGATAGCGAGGCTTTTCCCTGGGAGGACTGATAATTCTGTG 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 TATGGTAACAAATGGGCGATGATAGCGAGGCTTTTCCCTGGTAGGACTGATAATTCTGTG 588
Query 481 AAGAACCATTGGCATGTTATAATGGCTCGCAAGTTTAGAGAGCAATCTTCTGCTTACCGT 540
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 589 AAGAACCATTGGCATGTTATAATGGCTCGCAAGTTTAGGGAACAATCTTCTTCTTACCGT 648
Query 541 AGGAGGAAGACGATGCTTCCTCTTAAGCCACTCATTAACCCTAATCCTCACCTTTTCAAT 600
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 AGGAGGAAGACGATGGTTTCTCTTAAGCCACTCATTAACCCTAATCCTCACATTTTCAAT 708
Query 601 GCTTTTGACCCTACTAGGTTAGCTTTGACCCACCTTGTTAGTAATGACCAGAAGGAGCTT 660
| |||||||||||| ||||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct 709 GATTTTGACCCTACCCGGTTAGCTTTGACCCACCTTGCTAGTAGTGACCATAAGCAGCTT 768
Query 661 ATGTTGCCAATTCCTTGCTTCCCAGGTTATGATCATGGAAATGAGATTCCGTTAATGGTG 720
||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 769 ATGTTACCAGTTCCTTGCTTCCCAGGTTATGATCATGAAAATGAGAGTCCATTAATGGTG 828
Query 721 GATATGTTCCAAAACGAAATGATGGTCGGCGAATACATTGCATGGACACAAGAGTCAACT 780
||||||||| ||| | |||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 829 GATATGTTCGAAACCCAAATGATGGTTGGCGATTACATTGCATGGACACAAGAGGCAACT 888
Query 781 ACATTCGATTTCTTAAAACAAACCGGGAAGAGTGAGATGTTTGAAAGAATGAATGAGGAG 840
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 889 ACATTCGATTTCTTAAACCAAACCGGGAAGAGTGAGATATTTGAAAGAATCAATGAGGAG 948
Query 841 AAGAAACCACCATTTTTCGATTTTCTTGGGTTGGGGACGGTGTG---ATCATC-ATCATG 896
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 949 AAGAAACCACCATTTTTCGATTTTCTTGGGTTGGGGACGGTGTGATCATCATCGATCATG 1008
Query 897 AACAAGACTGGCTTGAGTTAGTTAACAAAAGTTATGAGATGATTTGAGTCCTTGTCGATG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AACAAGACTGGCTTGAGTTAGTTAACAAAAGTTATGAGATGATTTGAGTCCTTGTCGATG 1068
Query 957 TAGTTATGTTGCGTTAATAATTGTAGATTAAATGTTGTTGTCCTTAGTCACATGCAACAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAGTTATGTTGCGTTAATAATTGTAGATTAAATGTTGTTGTCCTTAGTCACATGCAACAT 1128
Query 1017 TCCTTACCCCTTGTTAATTAGTACGTACATATAT 1050
|||||||||| |||||||||| ||||||||||||
Sbjct 1129 TCCTTACCCCGTGTTAATTAGCACGTACATATAT 1162
> AT1G26780.2 | Symbols: MYB117, AtMYB117, LOF1 | myb domain protein
117 | chr1:9271029-9272463 FORWARD LENGTH=1084
Length=1084
Score = 429 bits (232), Expect = 3e-119
Identities = 305/341 (89%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 210 GAGAGGACATTGGAGACCAGCTGAAGATACCAAGCTCAAAGAACTAGTCGCTGTCTACGG 269
|||||||||||||||||||||||||||| || |||||||| || ||| | | |||||
Sbjct 295 GAGAGGACATTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGG 354
Query 270 CCCACAAAACTGGAACCTCATAGCTGAAAAGCTCCAAGGAAGATCCGGGAAAAGCTGTAG 329
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 355 CCCACAAAACTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGTAG 414
Query 330 ACTTCGATGGTTTAACCAACTAGACCCGAGGATAAATAGAAGAGCCTTT-ACAGAGGAAG 388
||| ||||||||||||||| | |||||||||||||| ||||||| ||| ||||| ||||
Sbjct 415 ACTACGATGGTTTAACCAATTGGACCCGAGGATAAACCGAAGAGC-TTTCACAGAAGAAG 473
Query 389 AAGAAGAGAGGCTAATGCAAGCTCATAGGCTTTATGGTAACAAATGGGCGATGATAGCGA 448
|||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 474 AAGAGGAGAGGCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGA 533
Query 449 GGCTTTTCCCTGGGAGGACTGATAATTCTGTGAAGAACCATTGGCATGTTATAATGGCTC 508
||||||||||||| || ||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 534 GGCTTTTCCCTGGTAGAACTGATAATTCAGTGAAGAACCATTGGCATGTTGTCATGGCTC 593
Query 509 GCAAGTTTAGAGAGCAATCTTCTGCTTACCGTAGGAGGAAG 549
| |||| |||||| || |||||||||||||||||||| |||
Sbjct 594 GTAAGTATAGAGAACACTCTTCTGCTTACCGTAGGAGAAAG 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5