BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476093
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69580.2 | Symbols: | Homeodomain-like superfamily protein ... 1790 0.0
> AT1G69580.2 | Symbols: | Homeodomain-like superfamily protein
| chr1:26171943-26173612 FORWARD LENGTH=1198
Length=1198
Score = 1790 bits (969), Expect = 0.0
Identities = 1127/1199 (94%), Gaps = 28/1199 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCAGATATGGAGTGagagaagaagaaaaag-aaaag-aa-aaaaaaaaCATCAA 57
||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct 1 ATGTTTCCAGATATGGAGTGAAAGAAGAAG-AAAAGAAAAAGAAAGAAAAAAAACATCAA 59
Query 58 CCACTCCAAAGATTTATATATATATCTATTAATCTCCATATCTTTGCCAACAAACCCAAC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CCACTCCAAAGATTTATATATATATCTATTAATCTCCATATCTTTGCCAACAAACCCAAC 119
Query 118 AATCTTTGAAAACAAATCACCCTTTCGTTTTTATTTAAATTTCTTGGGTCGTTTCTTAAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCTTTGAAAACAAATCACCCTTTCGTTTTTATTTAAATTTCTTGGGTCGTTTCTTAAA 179
Query 178 TTTGTATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTAATA--- 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TTTGTATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTACTATTG 239
Query 235 ATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACAGATGCTAAGCCAAGATTGAAAT 294
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 240 ATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACGGATGCTAAGCCAAGGTTGAAAT 299
Query 295 GGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACA 359
Query 355 AAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATC 419
Query 415 TCAAGAGTCATTTACAGAAATATCGGTTAGGGAAAAGCATGAAGTTCGATGATAACAAGC 474
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 TCAAGAGCCATTTACAGAAATATCGGTTAGGGAAGAGCATGAAGTTCGATGATAACAAGC 479
Query 475 TCGAAGCAGTTTCCTCTGCTTCAGAAAATCAAGAACCTGAGAGTAAAAACGATTCCAGAG 534
| |||| |||||||||| ||||| ||||||||| |||||||||||||||||| ||||
Sbjct 480 TAGAAG---TTTCCTCTGCATCAGAGAATCAAGAAGTTGAGAGTAAAAACGATTCAAGAG 536
Query 535 ATCTCCGCGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGACAGAGGGTTGC 594
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 537 ATCTCCGAGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGACAGAGGGCTAC 596
Query 595 AAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCG 656
Query 655 AAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATTTACAATCTGTTT 714
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 657 AAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATCTACAGTCCGTTT 716
Query 715 TAATGAAAGCTCAACAAACTCTCGCTGGCTACACATCTTCAACTCTCGGCATGGATTTCG 774
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 717 TAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCAAATCTCGGCATGGATTTTG 776
Query 775 CGAGAACGGAGCTCTCTAGATTAGCTTCAATGGTGAATAGAGGCTGTCCAAGTTCTTCGT 834
|||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 777 CGAGGACCGAGCTCTCTAGATTAGCTTCAATGGTGAACAGAGGCTGTCCAAGCACTTCGT 836
Query 835 TCTCAGAGCTAACGCAAGTAGAAGAAGAGGAAGAAGCAGAAGAAGGTTTCTTGTGGTACA 894
|||||||||||||||||||||||||||| | |||| | | | | ||||||||||||||
Sbjct 837 TCTCAGAGCTAACGCAAGTAGAAGAAGA--A-GAAG-A-A-G--G-TTTCTTGTGGTACA 887
Query 895 AGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACAT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACAT 947
Query 955 CTTCAGAGAGCTCAGAGATAAAACTTGAAAATGACAATAACCTTAATAAATTGATTGAGC 1014
||||||||| |||||||| |||||| || | |||||||||||||||||||| |||||| |
Sbjct 948 CTTCAGAGACCTCAGAGACAAAACTGGATACTGACAATAACCTTAATAAATCGATTGAAC 1007
Query 1015 TTCCGTTGATGGAGATCA-CATCTGAAGTGATAACAGGG-AAGAAGAGAAGCTTAAACGA 1072
|||||||||||||||||| | || |||||||| | |||| |||||||||||| |||||||
Sbjct 1008 TTCCGTTGATGGAGATCAAC-TCGGAAGTGATGA-AGGGGAAGAAGAGAAGCATAAACGA 1065
Query 1073 CGTCGTTTGTGTTGAACAGAAGCCTCTAATGAAGAGGGCTTTTGGAGTTGATGATGATGA 1132
||||||||| || || ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1066 CGTCGTTTGCGTGGAGCAG---CCTCTAATGAAGAGAGCTTTTGGAGTTGATGATGATGA 1122
Query 1133 GC-TCTTGAAGCTGAGTTTGAATAGTTACAAGAAAGACATGGAGACGTGTCCGAACATA 1190
|| | |||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1123 GCAT-TTGAAGTTGAGTTTGAATACTTACAAGAAAGACATGGAGGCGTGTACGAACATA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5