BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476093 Length=1193 Score E Sequences producing significant alignments: (Bits) Value AT1G69580.2 | Symbols: | Homeodomain-like superfamily protein ... 1790 0.0 > AT1G69580.2 | Symbols: | Homeodomain-like superfamily protein | chr1:26171943-26173612 FORWARD LENGTH=1198 Length=1198 Score = 1790 bits (969), Expect = 0.0 Identities = 1127/1199 (94%), Gaps = 28/1199 (2%) Strand=Plus/Plus Query 1 ATGTTTCCAGATATGGAGTGagagaagaagaaaaag-aaaag-aa-aaaaaaaaCATCAA 57 ||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||| Sbjct 1 ATGTTTCCAGATATGGAGTGAAAGAAGAAG-AAAAGAAAAAGAAAGAAAAAAAACATCAA 59 Query 58 CCACTCCAAAGATTTATATATATATCTATTAATCTCCATATCTTTGCCAACAAACCCAAC 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CCACTCCAAAGATTTATATATATATCTATTAATCTCCATATCTTTGCCAACAAACCCAAC 119 Query 118 AATCTTTGAAAACAAATCACCCTTTCGTTTTTATTTAAATTTCTTGGGTCGTTTCTTAAA 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AATCTTTGAAAACAAATCACCCTTTCGTTTTTATTTAAATTTCTTGGGTCGTTTCTTAAA 179 Query 178 TTTGTATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTAATA--- 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 180 TTTGTATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTACTATTG 239 Query 235 ATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACAGATGCTAAGCCAAGATTGAAAT 294 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 240 ATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACGGATGCTAAGCCAAGGTTGAAAT 299 Query 295 GGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACA 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACA 359 Query 355 AAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATC 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATC 419 Query 415 TCAAGAGTCATTTACAGAAATATCGGTTAGGGAAAAGCATGAAGTTCGATGATAACAAGC 474 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 420 TCAAGAGCCATTTACAGAAATATCGGTTAGGGAAGAGCATGAAGTTCGATGATAACAAGC 479 Query 475 TCGAAGCAGTTTCCTCTGCTTCAGAAAATCAAGAACCTGAGAGTAAAAACGATTCCAGAG 534 | |||| |||||||||| ||||| ||||||||| |||||||||||||||||| |||| Sbjct 480 TAGAAG---TTTCCTCTGCATCAGAGAATCAAGAAGTTGAGAGTAAAAACGATTCAAGAG 536 Query 535 ATCTCCGCGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGACAGAGGGTTGC 594 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 537 ATCTCCGAGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGACAGAGGGCTAC 596 Query 595 AAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCG 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 AAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCG 656 Query 655 AAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATTTACAATCTGTTT 714 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| Sbjct 657 AAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATCTACAGTCCGTTT 716 Query 715 TAATGAAAGCTCAACAAACTCTCGCTGGCTACACATCTTCAACTCTCGGCATGGATTTCG 774 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | Sbjct 717 TAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCAAATCTCGGCATGGATTTTG 776 Query 775 CGAGAACGGAGCTCTCTAGATTAGCTTCAATGGTGAATAGAGGCTGTCCAAGTTCTTCGT 834 |||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 777 CGAGGACCGAGCTCTCTAGATTAGCTTCAATGGTGAACAGAGGCTGTCCAAGCACTTCGT 836 Query 835 TCTCAGAGCTAACGCAAGTAGAAGAAGAGGAAGAAGCAGAAGAAGGTTTCTTGTGGTACA 894 |||||||||||||||||||||||||||| | |||| | | | | |||||||||||||| Sbjct 837 TCTCAGAGCTAACGCAAGTAGAAGAAGA--A-GAAG-A-A-G--G-TTTCTTGTGGTACA 887 Query 895 AGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACAT 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 AGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACAT 947 Query 955 CTTCAGAGAGCTCAGAGATAAAACTTGAAAATGACAATAACCTTAATAAATTGATTGAGC 1014 ||||||||| |||||||| |||||| || | |||||||||||||||||||| |||||| | Sbjct 948 CTTCAGAGACCTCAGAGACAAAACTGGATACTGACAATAACCTTAATAAATCGATTGAAC 1007 Query 1015 TTCCGTTGATGGAGATCA-CATCTGAAGTGATAACAGGG-AAGAAGAGAAGCTTAAACGA 1072 |||||||||||||||||| | || |||||||| | |||| |||||||||||| ||||||| Sbjct 1008 TTCCGTTGATGGAGATCAAC-TCGGAAGTGATGA-AGGGGAAGAAGAGAAGCATAAACGA 1065 Query 1073 CGTCGTTTGTGTTGAACAGAAGCCTCTAATGAAGAGGGCTTTTGGAGTTGATGATGATGA 1132 ||||||||| || || ||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1066 CGTCGTTTGCGTGGAGCAG---CCTCTAATGAAGAGAGCTTTTGGAGTTGATGATGATGA 1122 Query 1133 GC-TCTTGAAGCTGAGTTTGAATAGTTACAAGAAAGACATGGAGACGTGTCCGAACATA 1190 || | |||||| |||||||||||| ||||||||||||||||||| ||||| |||||||| Sbjct 1123 GCAT-TTGAAGTTGAGTTTGAATACTTACAAGAAAGACATGGAGGCGTGTACGAACATA 1180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58584036015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5