BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476096
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69610.1 | Symbols: | Protein of unknown function (DUF1666)... 2835 0.0
> AT1G69610.1 | Symbols: | Protein of unknown function (DUF1666)
| chr1:26186954-26189489 FORWARD LENGTH=2051
Length=2051
Score = 2835 bits (1535), Expect = 0.0
Identities = 1834/1973 (93%), Gaps = 42/1973 (2%)
Strand=Plus/Plus
Query 30 TACTAACTTCGATTTCTCCAATAAAGGTTTTGGTGTTGGTAGTTTGAAACAGTTTGTGTA 89
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 39 TACTAACTTCGATTTCTCCAATAAAGGTTTTGGTGTTGGTGGTTTGAAACAGTTTGTGTA 98
Query 90 CGGAAACACTTTCATAGTTCTCGATGCTTTCTGGGTTTCTTTCTCTAATCTCTTCTTCTT 149
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 99 CGGAAACACTTTCATTGTTCTCGATGCTTTCTGGGTTTCTTTCTCTAA-----TC-TCTT 152
Query 150 CAGAGTTAATTCAGACAAAGAGACAAGTTTGGTCGTGTTCGAGAAACAGAACACAAACGG 209
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 153 CAGAGTTAATCCAGACAAAGAGACAAGCTTGGTCTTGTTCGAGAAACAGAACACAAAAGA 212
Query 210 TTCCTCTGTTTACGGAGATTATCAAGATCAAAAGCAAATTTGTGGAACACAAGACGATGA 269
||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 213 TTCCTCTGTTTTTGGAGATCATCAAGATCAAAACCAAATTTGTGGAACACAAGACGATGA 272
Query 270 TCAGATGGAAAGTTCTCTGGTTTCGGA-TAGCAAGAGATGCGAATTTTATT-C-A-GACA 325
|||||||||||| ||||||||||| || ||||||||||||||| ||||||| | | |||
Sbjct 273 TCAGATGGAAAGCTCTCTGGTTTC-GATTAGCAAGAGATGCGAGTTTTATTCCGACAACA 331
Query 326 AAAGTAGCGTTGGTTTTGTAGAAGAGCCTAAAGCGTTTAGCTTTAAGTTTCATGAGTACT 385
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 332 AAAGTATCGTTGGTTTTGTAGAAGAACCTAAAGCGTTTAGCTTTAAGTTTCATGAGTATT 391
Query 386 CTGCTAGTACTGTTCAGGAGGAGGAGAAGAAGAAGATGGGGAATTTCTCTGATGAAAACA 445
|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 392 CTGCTATTACTGTTCAGGAGGAGGAGAAGAAGAAGATGGTGAGTTTCTCTGATGAAAAAA 451
Query 446 CGAGTTCCATGGTTTTGGAGGAATCAGAATCAGA--G------G-AGGAACACGTGAAAG 496
|||||||||||||||||||| ||||||||||||| | | |||||||||||||||
Sbjct 452 CGAGTTCCATGGTTTTGGAGAAATCAGAATCAGATGGTTTTATGAAGGAACACGTGAAAG 511
Query 497 AAGAGATGTTGGTTTATGAGTTCATGAGTTGTGGTGTTTTGAAAGAATCATTAGTCCACG 556
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct 512 AAGAGATGTTGGTTTATGAGTTCATGAGTTGTGGTGTTTTAAAAGAGTCATTGGTTCACG 571
Query 557 AGAATTTTGTTGGTGGTCAAGAAAACTTGTTTGATGATGATGATGGGTTTATAGAACTAA 616
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 572 AGAATCTTGTTGGTGGTGAAGACAACTTGTTTGATGATGATGATGGGTTTATAGAACTAA 631
Query 617 ACCCAAGTTTACAGATTTCTAACTTTGCTTAT------G--G-AGAAGAAGAGTTTATGC 667
||||||||||||||||||| |||||||||||| | | ||||||||||||||| |
Sbjct 632 ACCCAAGTTTACAGATTTCAAACTTTGCTTATGGAGAAGAAGAAGAAGAAGAGTTTATAC 691
Query 668 AGAAAGAAGAAGAGAGGAAAATGGGTTTTGATGAACAAGAAGAGGTATATGATGAGTTTG 727
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 692 ACAGAGAAGAAGAGATGAAAATGGGCTTTGATGAACAAGAAGAGGTATATGATGAGTTTG 751
Query 728 ACGATGGTTCAGATTCAGACGATGATGAGTTTGAGCATAGTGATGTGATTGAGAAATTGA 787
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 752 ATGATGGTTCAGATTCAGATGATGATGAGTTTGAGCATAGTGATGTGATTGAGAAGTTGA 811
Query 788 AAACAGAACTAAGGGCCGCAAGAACAGGAGGATTGTGCACTATTCTTGAGGAATCAGAGA 847
|||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 812 AAACAGAATTAAGGACTGCAAGGACAGGAGGATTGTGCACTATTCTTGAGGAATCAGAGA 871
Query 848 CTCCATTACAAGAGCTGAAACCACTCAAGATCGAACCAAAACCAGATCAACACAAAGACA 907
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 872 CTCCATTACAAGAGCTGAAACCACTCAAGATTGAACCAAAACCAGATCAACACAAAGACA 931
Query 908 GAATTGCTGAAATTCACAAGGTTTACAAGAACTATGTGGTTAAAATGCGAAAACTCGATG 967
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 932 GAATTGCTGAAATTCACAAGGTTTACAAGAACTACGCGGTTAAAATGCGAAAACTCGATG 991
Query 968 TCATCGATTCTCAAACAATGCATTCCATCAGTTTGCTAAAGCTAAAGGAATCATCTGAAC 1027
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 992 TCATCGATTCTCAAACAATGCATTCCATCAGTTTGCTAAAGCTAAAAGATTCATCTAAAC 1051
Query 1028 CGAGCAGAAACACCGATAAACCGCCTAAATCGTCTCTGCATCAGAATATATGGCCATTCA 1087
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CTAGTAGAAACACTGATAAACCGCCTAAATCGTCTCTGCATCAGAATATATGGCCATTCA 1111
Query 1088 AGAAACATAAGCTTGAATGTGACCCGATTGAGAGACTTGTGAAAGAAGCAAGCAGAGACT 1147
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1112 AGAAACATACGCTTGAATGTGACCCGAGTGAGAGACTTGTGAAAGAAGCAAGCAGAGACT 1171
Query 1148 TTGAGACTGTCTATGTAGGCCAAGTTTGTCTCTCGTGGGAGATGCTTCGATGGCAATACG 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TTGAGACTGTCTATGTAGGCCAAGTTTGTCTCTCGTGGGAGATGCTTCGATGGCAATACG 1231
Query 1208 -CTAAAGTCTTGGAATTTGATTCTCAGGTTACTACTTATCAATACAATTTAGTTGCTGGA 1266
| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1232 AC-AAAGTCTTGGAATTTGATTCACAGGTTACTACTTATCAATACAACTTAGTAGCTGGA 1290
Query 1267 GAGTTTCAGTTATTCCAAGTTCTGCTTCAACGGTTTGTGGAGAATGAACCGTTTCAAAAC 1326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1291 GAGTTTCAGTTATTCCAAGTTCTGCTTCAACGGTTTGTGGAGAATGAACCGTTTCAGAAC 1350
Query 1327 TCCTCTAGAGTTGAGACTTACTTAAAGAACCGTCGCCATTTCCATAATTTTCTTCAGATT 1386
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1351 TCCTCTAGAGTTGAGACTTACTTAAAGAACCGTCGCCATTTCCAGAATTTCCTTCAGATT 1410
Query 1387 CCACTTGTTAGAGATGATCGTTCCTCAAAGACTAACAAGAAATGTAGAAACGAAGGGGAA 1446
||||||||||||||||| ||||| || |||| | |||||||||| | ||||| |||
Sbjct 1411 CCACTTGTTAGAGATGACCGTTCTTCGAAGA--A----GAAATGTAGATATGAAGGAGAA 1464
Query 1447 TTCGCGGTAAAGATTGAAATGTTGAGAGAGATTATCCGAGAATCGATGAGTGTTTTTTGG 1506
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1465 TTCGCGGTAAAGACTGAAATGTTGAGAGAGATTATCCGAGAGTCGATGAGTGTTTTCTGG 1524
Query 1507 GAGTTTCTTTGTGCAGACAAAGATGAGTTTACTTCAATAATAAAAGTTTCTCACCAAACT 1566
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1525 GAGTTTCTTTGTGCAGACAAAGACGAGTTTACTTCAATGATGAAAGTTTCTCACCAAACT 1584
Query 1567 CAAGTCTCTCCACAAGATCCTCTAGACCTTGAGCTCTTGACAGATATCAGAACTGATCTC 1626
|||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1585 CAAGTCTCTCCACAGGATTCTTTAGACCTTGAGCTCTTGACAGATATCAGAACTCATCTC 1644
Query 1627 CAAAAGAAGGATAAGAAGCTAAAGGAAATACTAAGAAGCCAAAGCTGTATAGTGAAGAAG 1686
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1645 CAAAAGAAAGAGAAGAAGCTAAAGGAAATACAAAGAAGCCAAAGCTGTATAGTGAAGAAG 1704
Query 1687 ATAAAGAAGAATGAGTCAAAGAGTAATGTTGGTGTGAAGGATGAGTTACTGATAGCTCAA 1746
||||||||||||| |||||||||| | |||||||||||||||| ||||| |||||| ||
Sbjct 1705 TTAAAGAAGAATGAATCAAAGAGTAGTATTGGTGTGAAGGATGAATTACTAATAGCTAAA 1764
Query 1747 ATTGAACTGAGACTGGTTTCAAGAGTGATGAACATGTCGAAACTTACCACCGAGAAGTTA 1806
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 1765 ATTGAACTGAGACTGGTTTCAAGAGTGATGTACATGTCGAAACTTACTACTGAGAAGTTA 1824
Query 1807 GTTTGGTGT-AGGGAGAAACTTGAAAAGATCAGCTTCAACGGTCGGAAGATTCACATGGA 1865
||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1825 CATTGGTGTCAGG-AGAAACTTGAAAAGATCAGCTTCAACGGTCGGAAGATTCATATGGA 1883
Query 1866 ACCATCTTTCTCGTTGTTACCTTGTTGAGCCATCTCTGCCTATAGATTAGATCATAGATA 1925
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1884 ACCATATTTCTCGTTGTTACCTTGTTGAGCCATCTCTGCGTATAGATTAGATCATAGATG 1943
Query 1926 TTGGAATATTATGGCTTCA---GATCCGGGAAGATGTCTTTTTGTTGTTGTTC 1975
|||||| | |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1944 TTGGAACAATATGGCTTCATCAGATCCAGGAAGATGTCTTTTTGTTGTTGTTC 1996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97840862205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5