BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476098
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69630.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1317 0.0
AT1G78750.1 | Symbols: | F-box/RNI-like superfamily protein | ... 431 9e-120
AT1G78760.1 | Symbols: | F-box/RNI-like superfamily protein | ... 171 2e-41
> AT1G69630.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:26191640-26193174 REVERSE LENGTH=1356
Length=1356
Score = 1317 bits (713), Expect = 0.0
Identities = 864/937 (92%), Gaps = 9/937 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAAGATGGAGATAAACATGTTCGTGCGAAAGGATCTGATGAAGTTGATTGGATA 60
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAAGATAGAGAGAAACATGTTCGTGCGAAAGGATCTGATGAAGTTGATTGGATA 60
Query 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
Query 121 GTTAAGAGTAGTGTTTTATCCAC-TAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT 179
||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAAGACTAGTGTTTTATCC-CGTAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT 179
Query 180 AGACTTAGACAATTCTGATTTCCAAGAGTTCAACACATTCTTGAATTTTGTTGATAGCTT 239
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 AGACCTAGACAATACTGATTTCCAAGAGTTCAACACATTCTTGAGTTTTGTTGATAGCTT 239
Query 240 TCTTGATTTCAACACTGAATCATGCTTACAATACTTTATGTTGAAGTATGATTGTGATGA 299
||| |||||||||| |||||||| ||||||| | ||||| ||||||||||||||||||||
Sbjct 240 TCTCGATTTCAACAGTGAATCATTCTTACAAAAATTTATCTTGAAGTATGATTGTGATGA 299
Query 300 TGATGATTATGATCCTGAGATTTCTATTATCGGACGTTGGATCAACACTATTGTCACGCG 359
|| | | |||| ||||| |||| | ||||||||||||||||||||||||| ||||||||
Sbjct 300 CGA-G-T-ATGACCCTGACATTTTTCTTATCGGACGTTGGATCAACACTATCGTCACGCG 356
Query 360 CAATGTTAAACATATCGATGTTTTGGATGATTCATATGGGAGTTGGGAGGTTCAGTTGCC 419
|| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 357 TAAAGTTCAACATATCGATGTTTTGGATGATTCGTATGGGAGTTGGGAGGTTCAGTTACC 416
Query 420 TTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGTGCATTAACTTTACC 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 417 TTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGTGGATTAACTTTGGC 476
Query 480 TAGTCCCAAGTTTGTTTCTTTACCTTCTCTTAAAGTTATGGCTCTGCTTATAGCTAAGTT 539
||||||| ||||||||||||||||||| || |||||||||| |||| ||||| |||||||
Sbjct 477 TAGTCCCGAGTTTGTTTCTTTACCTTCACTCAAAGTTATGGATCTGATTATAACTAAGTT 536
Query 540 TGCTGACGATTTGGCGTTAGAAACGCTGATTACGAAATGCCCGGTTCTTGAAAGCTTGAC 599
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGCTGACGATATGGGGTTAGAAACGCTGATTACGAAATGCCCGGTTCTTGAAAGCTTGAC 596
Query 600 TATTGAGAGGTGTTTTTGTGATGAGATTGAAGTTTTACGTGTGCGGTCTCAGTCTTTGTT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 TATTGAGAGGTCTTTTTGTGATGAGATTGAAGTTTTACGTGTGCGGTCTCAGTCTCTGTT 656
Query 660 GAGCTTTACTCATGTTGCGGATAGTGATGAGGGTGTGGTTGAAGATCTTGTGGTTGAAAT 719
||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 657 GAGGTTCACTCATGTTGCGGATAGTGATGAGGGTGTGGTTGAAGATCTTGTTGTTTCAAT 716
Query 720 TGATGCTCCTAAGCTTGAGTATCTGAGGCTTAGTGATTATAGAGTTGCGAGTTTCATACT 779
||||||||| |||||||||||| ||||||| |||||| || ||||||| ||||| |||||
Sbjct 717 TGATGCTCCCAAGCTTGAGTATTTGAGGCTAAGTGATCATCGAGTTGCAAGTTTTATACT 776
Query 780 AAATAAACCGGGCAAGCTTGTTGAAGCGGATATCGATATTGTGTTTAACTTGTCTTCCG- 838
|||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 777 TAATAAACCCGGTAAGCTTGTCAAAGCGGATATCGATATTGTGTTTAACTTGAGTTCCGT 836
Query 839 GAAATAAGTTCAATCCAGATGATCTACCAAAAAGAACTATGATTCGTAATTTTCTCGTCG 898
||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 837 GAA-TAAGTTTAATCCAGATGATCTACCAAAGAGAACTATGATACGTAATTTTCTCCTCG 895
Query 899 -CGATTTCTACTGTCAAAGATTTGATCATTTCTTCGA 934
| || |||||| | |||||| ||||||||| |||||
Sbjct 896 GC-ATCTCTACTATTAAAGATATGATCATTTTTTCGA 931
Score = 448 bits (242), Expect = 9e-125
Identities = 288/310 (93%), Gaps = 3/310 (1%)
Strand=Plus/Plus
Query 979 TTGAGAAGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTACTAAATATCAAGAGAAG 1038
||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1049 TTGAG-AGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTGCTAGTTATCAGGAGAAG 1107
Query 1039 CAAGGAGATATTGTTTTCTCC-GGACCTCGGCGTTTCCTATCATCGCTCGAGTATGTTAA 1097
|| | ||||| |||| || |||||| |||||||||||||||| ||||||||||||||
Sbjct 1108 GGAGAAAATATTATTTT-GCCGGGACCTAGGCGTTTCCTATCATCTCTCGAGTATGTTAA 1166
Query 1098 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1226
Query 1158 GAATTCAACAATCCTCAAGGAACTGACCCTATGCTTGGATGATTCCATAAAGAAAGAAGA 1217
||||||||| ||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 1227 GAATTCAACCATCCTCAAGAAACTGACCCTATGCTTGGATGATTCCGTGAAGAAAGAAGA 1286
Query 1218 ATCTGTCATCCTAAAAGAACTCCTTACCATTCCAAGACTCTCTACATCATGCAAAGTTGT 1277
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1287 TTCTGTCATCCTAAAAGAACTCCTTGCCATTCCAAGACTCTCTACATCATCCAAAGTTGT 1346
Query 1278 CGTTCTCTGA 1287
||||||||||
Sbjct 1347 CGTTCTCTGA 1356
Score = 87.9 bits (47), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 925 ATTTCTTCGA-ATGTGAACGACTACCCTTATTCCGTAACTTATCTGTCTTGTGTGTTGAG 983
||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 953 ATTTC-TCAAGATGTGAACGACTACCCTTATTCCGTAACCTATCTGTCTTGTGTGTTGAG 1011
> AT1G78750.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:29613122-29614695 REVERSE LENGTH=1377
Length=1377
Score = 431 bits (233), Expect = 9e-120
Identities = 738/972 (76%), Gaps = 74/972 (8%)
Strand=Plus/Plus
Query 1 ATGGATGAAGATGGAGATAAACATGTTCGTGCGAAAGGATCTG-ATGAAGTTGATTGGAT 59
||||||| || || || |||| ||||||||| ||||| || | ||||||||| |||||
Sbjct 1 ATGGATGGAGCCGGTGAGAAACGTGTTCGTGCCAAAGGCTC-GCGTGAAGTTGACTGGAT 59
Query 60 AAGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGT 119
|||||| || ||||| ||||||||| |||||||||| |||||||||| ||||||||
Sbjct 60 AAGCAACTTGCCAGAAACATTGCTATGTCAGGTACTCTTCTATCTTCCCACGAAAGATGT 119
Query 120 TGTTAAGAGTAGTGTTTTATCCACTAGATGGAGAAATCTCTGGAAACACGTACCTGG-TT 178
||||||||||| || ||||| | ||||||||||||||||||||| | |||||||| ||
Sbjct 120 AGTTAAGAGTAGCGTGTTATCTAGTAGATGGAGAAATCTCTGGAAGTATGTACCTGGATT 179
Query 179 ----TAGACTTA----GA---CAAT-TCTG------ATT-TC-CAAGAGTTCAACACATT 218
| || ||| || | || || | ||| || | || |||||||||
Sbjct 180 CAACTTGAGTTATTGTGATTTCCATGTCCGCAACACATTCTCGTATGACCACAACACATT 239
Query 219 CTTGAATTTTGTTGATAGCTTTCTTGATTTCAACACTGAATCATGCTTACAATA-CTTTA 277
|||| |||||| || |||||| | | |||||||| | |||| ||||||||| | ||||
Sbjct 240 CTTGCGTTTTGTCGACAGCTTTATGGGTTTCAACAGTCAATCTTGCTTACAA-AGTTTTA 298
Query 278 TGTTGA-AGTATGATTGTGATGAT-GATGATTATGATCCTGAGA-TTTCTATTATC-GGA 333
||| | |||| |||| | | | | | | || ||| ||| | | | || | ||| ||
Sbjct 299 GGTT-AGAGTACGATTCT-A-G-TGGGT-ATGGTGAGCCT-AAACTGGCTCTGATCAGG- 351
Query 334 CGTTGGATCAACACTATTGTCACG-CGCAATGTTAAACATATCGATGTTTTGGATGATTC 392
|| |||||||||| | |||| | | || || || ||| || ||| |||||||||||||||
Sbjct 352 CGGTGGATCAACAGTGTTGTTA-GTCGGAAAGTGAAATATCTCGGTGTTTTGGATGATTC 410
Query 393 ATATGGGAGTTGGGAGGTTC-AGTTGCCTTCAAGCATTTACACTTGTGAGAGTTTGGTAT 451
|| || | || || |||| || ||||| ||| | ||||||||||||||| || ||||
Sbjct 411 ATGTGATAATTATGA-GTTCGAGATGCCTCCAACCCTTTACACTTGTGAGACCTTAGTAT 469
Query 452 -CTTTAAAGCTTTG-TGCATTAACTTTACCTAGTCCCAAGTTTGTTTCTTTACCTTCTCT 509
| |||| || | | || | || | || |||||||||||||||||||||||||||||||
Sbjct 470 AC-TTAACGC-TCGATGGACTATCCTTGGCTAGTCCCAAGTTTGTTTCTTTACCTTCTCT 527
Query 510 TAAAGTTA-TGGC-TCTGCTTATAGCTAAGTTTGCTGACGATTTGGCGTTAGAAACGCTG 567
||||| | | | ||| ||||| ||||||||| ||| || ||||||| ||||| ||
Sbjct 528 TAAAG-AACT-CCATCTAAGTATAGTTAAGTTTGCCGACCATATGGCGTTGGAAACACTC 585
Query 568 AT-TACGA-AATGCCCGGTTCTTGAAAGCTTGACTATTGAGAGGTGTTTTTGTGATGAGA 625
|| | | | | ||||| ||||| |||| | | | ||| | ||| |||| ||||||||
Sbjct 586 ATCT-C-ACAGTGCCCAGTTCTAGAAAACCTAAATATCAACAGGAGTTTCTGTGATGATT 643
Query 626 TTGAAGTTTTAC--GTGTGCGGTCTCAGTCTTTGTTGAGCTTTACTCATGTTGCGGATAG 683
||||| ||||| ||||||| |||||||| | |||||||| |||||||||||||| |
Sbjct 644 TTGAA--TTTACATGTGTGCGTTCTCAGTCACTATTGAGCTTCACTCATGTTGCGGACAC 701
Query 684 TGATGAGGGTGTGGT-TGAAGATCTTGTGGTTGAAATTGATGCTCCTAAGCTTGAGTATC 742
|||||| ||| | ||||||||| || || | ||||||||| || |||||| ||||||
Sbjct 702 TGATGAAA-TGTTGAATGAAGATCTAGTAGTCGCAATTGATGCCCCCAAGCTTAAGTATC 760
Query 743 TGAGGCTTAGTGATTATAG-AGTTGCGAGTTTCATACTAAATAAACCGGGCAAGC-TTGT 800
||||||| |||||| || | | |||| ||||| ||||||||| | | || | | ||||
Sbjct 761 TGAGGCTCAGTGATCATCGTA-TTGCAAGTTTTATACTAAATGATCTGG-CTTCCCTTGT 818
Query 801 TGAAGCGGATATCGATATTGTGTTTAACTTG-TCTTCCG-GAA-ATAAGTTCAATCCAGA 857
|||||| |||||||||| ||| ||||||||| | || | ||| || |||||||||| |
Sbjct 819 TGAAGCTGATATCGATACTGTCTTTAACTTGAT-TTGCAAGAAGAT--GTTCAATCCAAA 875
Query 858 TGATCT-ACCAAAAAGAACTATGATTCGTAATTTTCTCGTCGCGATTTCTA-CTGTCAAA 915
|||||| | |||| ||| |||||||||| |||||||||||| ||| |||| | | |||
Sbjct 876 TGATCTGAATAAAA-GAAATATGATTCGTGATTTTCTCGTCGGGATCTCTAGCA-TAAAA 933
Query 916 GA-TTTGATCAT 926
| |||||||||
Sbjct 934 -ACTTTGATCAT 944
Score = 398 bits (215), Expect = 9e-110
Identities = 280/311 (90%), Gaps = 5/311 (2%)
Strand=Plus/Plus
Query 979 TTGAGAAGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTACTAAATATCAAGAGAAG 1038
|||| ||||||||| ||||||||| ||||||||||| |||| |||| |||| ||||||
Sbjct 1070 TTGA-AAGCTGCCCTAATCTAAAATCTCTTGTCGTGGGATCTGCTAATTATCGGGAGAAG 1128
Query 1039 CAAGGAGA-TATTGTTTTCTCCGGACCTCGGCGTTTCCTATCATCGCTCGAGTATGTTAA 1097
| ||| | || | | || || | ||||||| |||||||||| || ||||||||||||||
Sbjct 1129 GAGGGA-ATTAATATCTTGTCTGTACCTCGGGGTTTCCTATCGTCTCTCGAGTATGTTAA 1187
Query 1098 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1247
Query 1158 GAATTCAACAATCCTCAAGGAACTGACCCTATGCTTGGATGATTCCATAAAGAAAGAAGA 1217
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GAATTCAACAATCCTCAAGAAACTGACCCTATGCTTGGATGATTCCATAAAGAAAGAAGA 1307
Query 1218 ATCTGTCATCCTAAAAGAACTCCTTACCATTCCAAGACTCTCTA-CATCATGCAAAGTTG 1276
|||||||||||||||||||||| ||| |||||||||||||||| | ||||| ||||||
Sbjct 1308 ATCTGTCATCCTAAAAGAACTCAATACTATTCCAAGACTCTCTAGCG-CATGCCAAGTTG 1366
Query 1277 TCGTTCTCTGA 1287
|| ||||||||
Sbjct 1367 TCATTCTCTGA 1377
> AT1G78760.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:29615174-29616738 REVERSE LENGTH=1359
Length=1359
Score = 171 bits (92), Expect = 2e-41
Identities = 517/713 (73%), Gaps = 65/713 (9%)
Strand=Plus/Plus
Query 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
||||| |||||||| | || ||||| || || | |||||| | ||||| || |||||
Sbjct 55 AGCAACTTACCAGAATCCTTAATATGTCAGATAATGTTGAATATCCCCACGAAGGATGTG 114
Query 121 GTTAAGAGTAGTGTTTTATCCACTAGATGGAGAAATCTCTGGAAACACGTACCTGGTTTA 180
|||||||||||||| ||||||| ||||||||||||||||||| | | |||||||||||
Sbjct 115 GTTAAGAGTAGTGTCTTATCCAAAAGATGGAGAAATCTCTGGAGATATGTACCTGGTTT- 173
Query 181 G-AC-T-TAG-ACAATTCTGATTTCCAAGAGT-TCAACACATTCTTGAATTTTGTTGATA 235
| || | || |||| || |||| | ||| | | || | ||| ||| |||||||||||
Sbjct 174 GAACGTGGAGTACAA-TC-AATTT-CTAGACTAT-AATGCTTTCGTGAGTTTTGTTGATA 229
Query 236 GCTTTCTTGATTTCA-ACACTGAATCATGCTTACAATA-CTTTATGTTGAA-GTATGATT 292
| ||||| | ||| | ||| || || ||||| ||| | |||| ||| || ||| ||||
Sbjct 230 GGTTTCTGGCTTT-AGACAGAGAGTCTTGCTTCCAA-AGTTTTAGGTT-AAGGTACGATT 286
Query 293 GTGATGATGATGATTATGATCCTG-A-GATTTCTATTATCGGA-CGTTGGATCAACACTA 349
||||||| | || | || | | | ||||||| | || | || |||||||||| |
Sbjct 287 GTGATGA--A-GA--A-GA-GC-GCACTATTTCTAATGTC-AAGCGGTGGATCAACATTG 337
Query 350 TTGTC-ACGCGCAATGTTAAACATATCGATGTTTTGGATGATTCA-TATGGGAG-TTG-G 405
| ||| || | || ||||| | |||| |||||||| | || | |||| | || |
Sbjct 338 TCGTCGAC-CAAAAACTTAAAGTTCTCGACGTTTTGGA--CTACACT-TGGGGGAATGAG 393
Query 406 GAGGTTCAGTTGCCTTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGT 465
|| || ||| | ||| || | ||||||| || ||||| ||||| ||||||||||| |||
Sbjct 394 GAAGTCCAGATACCTCCATCCGTTTACACATGCGAGAGCTTGGTGTCTTTAAAGCTCTGT 453
Query 466 GCAT-T-AACTTTACCTAGTCCCAAGTTTGTTTCTTTACCTTCT-CTTAAAGTTA-TG-G 520
|| | | | || |||| ||| ||| || | ||||| |||| | | ||||||| || |
Sbjct 454 -AATGTGATC-TTGCCTAATCCTAAGGTTATATCTTTGCCTT-TGGTCAAAGTTATTGAG 510
Query 521 CTCTGCTTATAGCTAAGTTTGCTGACGATTTGGCGTTAGAAACGCTGAT-TACGAA-ATG 578
|| || ||||| ||||||| | | | ||||| || |||| | | || | | || ||
Sbjct 511 CT-TG-ATATAGTTAAGTTTTCCAATGCTTTGGTTTTGGAAAAGATCATCT-C-AAGCTG 566
Query 579 CCCGGTTCTTGAAAGCTTGACTATTGAG-AGGTGTTTTTG-TGATGAGATTGAA-GTTTT 635
| | |||||||||||||| || | || ||| | || | |||||| | | || |||||
Sbjct 567 TTCAGCTCTTGAAAGCTTGATTA-TAAGCAGGAG-TTCCGTTGATGATA-TAAATGTTTT 623
Query 636 ACGTGTGCGGTCTCAGTCTTTGTTGAGCTTTACTCATGTT-GCGGA-TAGTGATGA-GGG 692
|||||| | |||| |||| | ||||||| | ||| || || | | || ||| ||
Sbjct 624 ACGTGTTAGTTCTCGGTCTCTACTGAGCTTCAAACATATTGGC-AACT-GTTCTGACGGT 681
Query 693 TGTGGTTGAAGATCTTGTGGTTGAAATTGATGCTCCTAAGCTTGAGTATCTGA 745
|| || || | || | | |||| |||||||||||||||||||||||||||||
Sbjct 682 TG-GGATG-A-AT-TAGAAGTTGCAATTGATGCTCCTAAGCTTGAGTATCTGA 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5