BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476099
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69640.1 | Symbols: SBH1 | sphingoid base hydroxylase 1 | ch... 1845 0.0
> AT1G69640.1 | Symbols: SBH1 | sphingoid base hydroxylase 1 |
chr1:26193659-26195695 REVERSE LENGTH=1286
Length=1286
Score = 1845 bits (999), Expect = 0.0
Identities = 1183/1266 (93%), Gaps = 36/1266 (3%)
Strand=Plus/Plus
Query 1 AAAACGCAAGTATCGTTCTTTGTTTTGTTTC-TTCTTCATCGTTGATTTGTCAAACTCAA 59
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 AAAACGCAAGTATCGTCCTTTGTTTTGTTTCTTTCTTCATCGTTGATTTGTC-AACTCAA 59
Query 60 CGACG-CCAAACCCT--AA-AA----CAATCATCGATTCAACAATCAAATTTCCCCTATT 111
| ||| ||||||||| || || ||||||||| ||||| |||||||||||||| |||
Sbjct 60 CAACGCCCAAACCCTAAAACAATCCCCAATCATCGTTTCAATAATCAAATTTCCCCAATT 119
Query 112 GAAGGATAAAAATCAAACCTTTAGCAGTTTTCCTGTGATAA-AATCTTTCCTTTTTGCAT 170
|||| ||||| |||||| |||| | ||||||||||||| || ||||| ||||||||||||
Sbjct 120 GAAGAATAAAGATCAAAACTTTGGAAGTTTTCCTGTGAAAATAATCTATCCTTTTTGCAT 179
Query 171 CAATTGCG-TTTGGTTGATGAAGAGGATCTGAAGAAGCTGAGATTTAGG-A--ATGATGG 226
|| ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 180 CATTTGCGTTTTGGTTGATGAAGAGGATCTGAAGAAGCTGAGATTTAGGAATGATGATGG 239
Query 227 GTTTTGCTGTATCGGATGAATTGTTGGGTACTGTTGCTCCGATTGTGGTGTATTGGTTGT 286
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GTTTTGCTGTATCGGATGAATTGTTGGGTACTGTTGCTCCGATTGTGGTGTACTGGTTGT 299
Query 287 ATTCTGGGATTTATGTAGCGCTCTCGTCTTTGGAGAGTTATAGATTGCATTCAAAGGTTG 346
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 300 ATTCTGGGATTTATGTAGCGCTCTCCTCTTTAGAGAGTTATAGATTGCATTCAAAGGTTG 359
Query 347 AAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCTTGTTCAAC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCTTGTTCAAC 419
Query 407 AGGTTGTTCAAGCTGTTGTCGCTATCCTTTTATTCACGGTGACAGGAAGTGATGTCGAAG 466
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 420 AGGTTGTTCAAGCTGTTGTCGCTATCCTTTTGTTCACGGTGACGGGAAGTGATGCCGAAG 479
Query 467 CAGACAAAGCGCAACAGTTTTCCCTGTTGGTCTTAGCCAGACAGTTTGTGACGGCCATGA 526
||||||||||||||||||||||| | |||||| |||| |||||||||||||| |||||||
Sbjct 480 CAGACAAAGCGCAACAGTTTTCCTTCTTGGTCCTAGCAAGACAGTTTGTGACTGCCATGA 539
Query 527 TAGTCCTAGACACATGGCAATACTTTATGCATCGATATATGCATCACAACAAGTTCTTAT 586
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 540 TAGTCCTCGACACATGGCAATACTTCATGCATCGATATATGCATCAGAACAAGTTCTTAT 599
Query 587 ACAAACATATCCACTCTCAACACCACCGTCTTATCGTCCCTTATGCATATGGAGCGTTAT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 ACAAACATATCCACTCTCAACACCACCGTCTTATCGTCCCTTATGCATATGGAGCTTTAT 659
Query 647 ACAACCACCCAGTTGAAGGTCTTCTCTTGGATACAGTTGGAGGCGCCTTATCTTTCCTAG 706
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 ACAACCATCCAGTGGAAGGTCTTCTCTTGGATACAATTGGAGGCGCCTTATCTTTCCTAG 719
Query 707 TCTCTGGTATGTCTCCAAGAACTTCCATCTTCTTCTTCTCTTTCGCCACAATCAAGACTG 766
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 720 TCTCTGGTATGTCTCCAAGAACTTCCATCTTCTTCTTCTCTTTCGCCACGATCAAAACCG 779
Query 767 TGGACGACCATTGCGGTCTCTGGCTTCCTGGAAACTTATTCCATATGGTCTTCAAGAACA 826
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 TGGACGACCATTGCGGTCTCTGGCTACCTGGAAACTTATTCCATATGGTCTTCAAGAACA 839
Query 827 ACTCGGCTTACCACGATATCCATCATCAGCTCTATGGAACCAAATACAATTTCTCTCAGC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTCGGCTTACCACGATATCCATCATCAGCTCTATGGAACCAAATACAATTTCTCTCAGC 899
Query 887 CTTTCTTTGTTATGTGGGATCGGATTCTGGGAACTTACATGCCTTATTCCCTCGAGAAAA 946
|||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||
Sbjct 900 CTTTCTTTGTCATGTGGGATCGGATTCTTGGAACTTACATGCCTTACTCGCTTGAGAAAA 959
Query 947 GAGAAGATGGAGGATTCGAAGCACGCCCGACTAAAGAATTCAAAGACGATTAAAGATTTT 1006
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 960 GAGAAGATGGAGGATTCGAAGCTCGCCCGACTAAAGAATTCAAAGACGATTAA-GATTTT 1018
Query 1007 GGAGTTTGGATATATGTTATGTATCTGCCCTGGCCCCTGTGGTTGGATAA-TGGATGATA 1065
|||||||||||||||||||||||||||||||| | | ||||| || |||||||||
Sbjct 1019 GGAGTTTGGATATATGTTATGTATCTGCCCTGA-----G-G-TTGGAGAAATGGATGATA 1071
Query 1066 CTTTGTGTTATTGGAGGTGTAGTTTTAAA-TCAGAAACAGAACTGGTTTGT--G--TTTT 1120
||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||
Sbjct 1072 CTTTGTGTTATTGGAGGTGTAGTTTTAAAATCAGAAACAGAACTGGTTTTTTTGCGTTTT 1131
Query 1121 GCGTTTCTTCTCAAGAGCGAAT----CT-GGAGTTTGAGATTTGTATATAAACATTATTG 1175
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1132 GCGTTTCTTCTCAAGAGCGAATTTAGCTTGGAGTTTGAGATTTGTATATAAACATTATTG 1191
Query 1176 AGTTGTTGTTCTACTTTCGGtttttttGTTTTGCATGTAACATTACCACAACAAACTTGt 1235
||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||
Sbjct 1192 AGTTGTTGTTCTACTTTCGGTTTTT--GTTTTGCATGTAATATTACTACAACAAACATGT 1249
Query 1236 tttttt 1241
||||||
Sbjct 1250 TTTTTT 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5