BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476100
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69670.1 | Symbols: CUL3B, ATCUL3B | cullin 3B | chr1:262020... 2121 0.0
AT1G26830.1 | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 ... 1230 0.0
> AT1G69670.1 | Symbols: CUL3B, ATCUL3B | cullin 3B | chr1:26202031-26204442
REVERSE LENGTH=2337
Length=2337
Score = 2121 bits (1148), Expect = 0.0
Identities = 1338/1427 (94%), Gaps = 24/1427 (2%)
Strand=Plus/Plus
Query 32 TTGATCCAAAATACGCCGATAAAACTTGGAAGATTCTGGAACATGCGATTCATGAGATTT 91
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 59 TTGATCCAAAATACGCCGATAAAACTTGGAAGATCCTTGAACATGCGATTCATGAGATTT 118
Query 92 ACAATCACAACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGG 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACAATCACAACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGG 178
Query 152 TTCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATTTCATC 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATTTCATC 238
Query 212 TCAAAGAGATATGTAAGTCTATTGAAGAAGCTCATGGAGGTGC-TTTCTTAGAATTGCTT 270
|||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||
Sbjct 239 TCAAAGAGATATGTAAGTCTATTGAAGAAGCTCAAGGAGGAGCATTT-TTAGAATTGCTT 297
Query 271 GATAGGAAATGGAATCATCACAACAAAGCGTTGC-AA--A-T---G--------A--T-T 312
|||||||||||||| |||| ||||||||||||| || | | | | | |
Sbjct 298 AATAGGAAATGGAATGATCATAACAAAGCGTTGCAAATGATTAGGGATATTCTCATGTAT 357
Query 313 ATGGATCGGACTTACGTTTCTAGTACTAAGAAAAGGCATGTTCATGAGCTTGGACTTCAT 372
|||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 358 ATGGATCGTACTTACGTTTCTACTACTAAGAAAACTCATGTTCATGAGCTTGGACTTCAT 417
Query 373 CTTTGGAGGGATAATGTTGTGTATTCGAGTAAGATTCAGACTAGGCTTTTGAATACGCTT 432
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 CTCTGGAGAGATAATGTTGTGTATTCGAGTAAGATTCAGACTAGGCTATTGAATACGCTT 477
Query 433 CTTGATTTAGTTTATAAGGAACGGACCGGTGAAGTTATAGATAGGTTGTTGATGAGGAAT 492
|||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 478 CTTGATTTAGTTCATAAGGAACGGACTGGTGAAGTTATAGATAGGGTGTTGATGAGGAAT 537
Query 493 GTGATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGATGATTTCGAGAAGCCG 552
||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 538 GTGATTAAGATGTTTATGGATTTAGGTGAATCTGTTTATCAAGATGATTTTGAGAAGCCG 597
Query 553 TTTTTGGAAGCTTCTGCTGAGTTTTACAAGGTTGAGTCACA-GGGGTTTATTGAGTCTTG 611
|||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||
Sbjct 598 TTTTTGGAAGCTTCTGCTGAGTTTTATAAGGTTGAGTCA-ATGGAGTTTATTGAGTCTTG 656
Query 612 TGATTGTGGTGATTATTTGAAGAAAGCGGAGAAACCTTTTGTGGAAGAAGTCGAAAGGGT 671
|||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 657 TGATTGTGGTGAGTATTTGAAGAAAGCTGAGAAGCCTTTAGTGGAAGAAGTCGAAAGGGT 716
Query 672 TGCT-CACTATTTGGATGCCAAGAGCGAAGCGAAGATTACTAGTGTGGTTGAAAGAGAAA 730
|| | | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 717 TG-TGAATTATTTGGATGCTAAGAGCGAAGCGAAGATTACTAGTGTGGTTGAAAGAGAGA 775
Query 731 TGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTAATATGC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTAATATGC 835
Query 791 TTTTGAATGATAAGTATGAGGATATGGGTAGAATGTACAGTTTGTTCCGCAGGGTTGCCA 850
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 836 TTTTGAATGATAAGTATGAGGATATGGGTAGAATGTATAGTTTGTTCCGTAGGGTTGCTA 895
Query 851 ATGGTCTTGTTACTATTAGAGATGTTATGACTTTGCATCTTAGGGAGATGGGAAAACAGC 910
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 896 ATGGTCTTGTAACGGTTAGAGATGTTATGACTTTGCATCTTAGGGAAATGGGAAAACAGT 955
Query 911 TGGTTACCGATCCAGAGAAATCAAAGGTTCCCGTTGAATTTGTGCAGCGTCTATTAGATG 970
||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 956 TGGTTACTGATCCAGAGAAATCAAAGGATCCGGTTGAATTTGTGCAGCGTCTATTGGATG 1015
Query 971 AGCGGGATAAGTATGACAAAATTATCAACATGGCATTTAACAACGATAAGACGTTCCAGA 1030
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGCGGGATAAGTATGACAGAATTATCAACATGGCATTTAACAACGATAAGACGTTCCAGA 1075
Query 1031 ATGCGCTGAATTCTTCGTTTGAGTATTTCCTCAACTTGAACACCCGTTCTCCTGAGTTTA 1090
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1076 ATGCGCTAAATTCTTCGTTTGAGTATTTCGTCAACTTGAACACACGTTCTCCTGAGTTTA 1135
Query 1091 TCTCCTTGTTTGTTGATGATAAACTACGAAAAGGACTAAAAGGTGTGGGGGAGGAGGATG 1150
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1136 TCTCCCTGTTTGTTGATGATAAGCTACGAAAAGGACTAAAAGGTGTGGGAGAGGAGGATG 1195
Query 1151 TGGATCTTATTCTTGATACGGTGATGATGTTGTTTCGCTATTTACAGGAGAAAGACGTTT 1210
| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 TCGATCTTATTCTTGATAAGGTGATGATGTTGTTTCGCTACTTACAGGAGAAAGACGTTT 1255
Query 1211 TTGAGAAATACTACAAACAACGTCTGGCAAAAAGGCTTTTATCTGGAAAAACTGTGTCGG 1270
|||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1256 TTGAGAAATATTACAAACAGCATCTGGCGAAAAGGCTTTTATCTGGAAAAACTGTGTCGG 1315
Query 1271 ATGATGCTGAGAGGAATCTGATAGTTAAACTGAAGACAGAATGTGGGTATCAGTTCACTT 1330
||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1316 ATGATGCAGAGAGGAATCTGATAGTGAAACTGAAGACGGAATGTGGGTATCAATTCACTT 1375
Query 1331 CGAAACTGGAAGGTATGTTCACTGACATGAAGACCTCACACGATACACTGCTAGGATTTT 1390
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1376 CGAAACTTGAAGGTATGTTCACTGACATGAAGACCTCACACGACACGCTGCTAGGATTTT 1435
Query 1391 ATAATAGCCATCCCGAGCTTTCAGAAGGACCGACACTTGTTGTTCAG 1437
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1436 ATAATAGCCATCCCGAGCTTTCAGAAGGACCTACACTTGTTGTTCAG 1482
Score = 568 bits (307), Expect = 1e-160
Identities = 331/343 (97%), Gaps = 0/343 (0%)
Strand=Plus/Plus
Query 1435 CAGCCAACCATACAGTGTAACCTACCTGCAGAAGTTTCTGTTCTGTGTGAGAAGTTCAGG 1494
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 CAGCCAACCATACAATGTAACCTACCTGCAGAAGTTTCTGTTCTGTGTGAGAAGTTCAGG 1569
Query 1495 TCATATTACCTCGGGACTCACACCGGCATGAAATTGTCTTGGCAAACCAATATGGAAACA 1554
|||||||||||||||||||||||||| | || ||||||||||||||| ||||||| ||||
Sbjct 1570 TCATATTACCTCGGGACTCACACCGGTAGGAGATTGTCTTGGCAAACGAATATGGGAACA 1629
Query 1555 GCAGATATCAAAGCAGTGTTTGGAAAGGGTCAGAAGCTTGAACTAAATGTTTCGACTTTT 1614
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1630 GCAGATATCAAAGCAGTGTTTGGAAAGGGTCAGAAGCATGAACTAAACGTTTCGACTTTC 1689
Query 1615 CAAATGTGTGTCCTTATGTTGTTCAACAACTCTGATCGACTGAGCTACAAAGAGATCGAA 1674
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1690 CAAATGTGTGTCCTTATGTTGTTCAACAACTCTGATCGACTAAGCTACAAAGAGATCGAA 1749
Query 1675 CAGGCAACTGAAATCCCCACCTCAGACCTAAAGCGTTGCTTGCATTCAATGGCGTGTGTA 1734
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1750 CAGGCAACTGAAATCCCCACCCCAGACCTAAAGCGTTGCTTGCAGTCAATGGCGTGTGTA 1809
Query 1735 AAAGGTAAAAACGTGCTAAGAAAAGAACCAATGAGCAAGGAGA 1777
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 AAAGGTAAAAACGTGCTAAGAAAAGAACCAATGAGCAAGGAGA 1852
Score = 300 bits (162), Expect = 4e-80
Identities = 180/189 (95%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1861 GTGAGGATTATGAAGGCAAGACGAGTGTTGGATCACAACAACATTATCGCAGAGGTCACC 1920
|||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2014 GTGAGGATAATGAAGTCTAGACGAGTGTTGGATCACAACAACATAATCGCAGAGGTCACC 2073
Query 1921 AAACAGTTGCAGTCGCGGTTCTTGGCAAACCCAACAGAGATAAAGAAGAGAATTGAATCG 1980
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 AAACAGTTGCAGACGCGGTTCTTGGCAAACCCAACAGAGATAAAGAAGAGAATTGAATCA 2133
Query 1981 CTCATTGAGCGTGATTTCTTGGGGAGGGATAATACAGACCGAAAACTTTACCGCTATTTA 2040
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 2134 CTCATTGAGCGTGATTTCTTGGAGAGGGATAATACAGACCGGAAACTTTACCGCTATCTA 2193
Query 2041 GCGTAAAAA 2049
|||||||||
Sbjct 2194 GCGTAAAAA 2202
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGA 35
|||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGA 35
> AT1G26830.1 | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin
3 | chr1:9295736-9298541 FORWARD LENGTH=2572
Length=2572
Score = 1230 bits (666), Expect = 0.0
Identities = 1186/1435 (83%), Gaps = 44/1435 (3%)
Strand=Plus/Plus
Query 34 GATCCAAAATACGCCGATAAAACTTGGAAGATTCTGGAACATGCGATTCATGAGATTTAC 93
||||| |||||||| |||||||||||| ||||||| || | |||||| ||| ||||||||
Sbjct 267 GATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCCATCAGATTTAC 326
Query 94 AATCACA-ACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGGT 152
||||| | | ||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 327 AATCA-AGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGTACAACATGGT 385
Query 153 TCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATT-TCATC 211
|| || |||| |||||| ||||| |||||||| || || | |||||||| || |||||
Sbjct 386 CCTGCACAAGTTTGGTGAGAAGCTATATACTGGGTTTATTGCTACTATGAC-TTCTCATC 444
Query 212 TCAAAGAGATATGTAAGTC-TATTGAAGAAGCTCATGGA-GGTGC-TTTCTTAGAATTGC 268
||||||| | || ||| | ||| || | |||||| ||| ||| | |||| ||||| ||
Sbjct 445 TCAAAGAAAAATCCAAG-CTTATCGAGGCAGCTCAGGGAGGGT-CGTTTC-TAGAAGAGC 501
Query 269 TTGATAGGAAATGGAATCATCACAACAAAGCG-T-----TG---C-A-A-A---TGA--T 311
|| ||| |||||||||| | |||||||||||| | || | | | | | | |
Sbjct 502 TTAATAAGAAATGGAATGAGCACAACAAAGCGTTAGAGATGATTCGAGACATTCTCATGT 561
Query 312 -TATGGATCGGACTTACGTTTCTAGTACTAAGAAA-AGGCATGTTCATGAGCTTGGACTT 369
||||||| ||||||| || || || || ||| | ||||||||| | | || |||
Sbjct 562 ATATGGATAGGACTTATATTGAGAGCACCAA-AAAGACTCATGTTCATCCGATGGGGCTT 620
Query 370 CATCTT-TGGAGGGATAATGTTGTGTA-TTCGAGTAAGATTCAGACTAGGCTTTTGAATA 427
| ||| |||||||||||||||||| | ||| | |||||| || || |||||| | || |
Sbjct 621 -AACTTGTGGAGGGATAATGTTGTGCATTTC-ACTAAGATACATACAAGGCTTCTAAACA 678
Query 428 CGCTTCTTGATTTAGTTTATAAGGAACGGACCGGTGAAGTTATAGATAGGTTGTTGATGA 487
| ||||||||| |||| | |||||||||| ||||||||||| |||||| ||||||||
Sbjct 679 CTCTTCTTGATCTAGTGCAGAAGGAACGGATAGGTGAAGTTATTGATAGGGGGTTGATGA 738
Query 488 GGAATGTGATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGATGATTTCGAGA 547
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 739 GGAATGTCATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGAGGATTTTGAGA 798
Query 548 AGCCGTTTTTGGAAGCTTCTGCTGAGTTTTACAAGGTTGAGTCACAGGGGTTTATTGAGT 607
||||||||||||| || ||| |||||||||| ||||||||||| |||| ||||||||| |
Sbjct 799 AGCCGTTTTTGGATGCGTCTTCTGAGTTTTATAAGGTTGAGTCTCAGGAGTTTATTGAAT 858
Query 608 CTTGTGATTGTGGTGATTATTTGAAGAAAGCGGAGAAAC-CTTTTGTGGAAGA-AGTCGA 665
||||||||||||| || ||| |||||||| | ||||||| | || || |||| | | ||
Sbjct 859 CTTGTGATTGTGGGGACTATCTGAAGAAATCAGAGAAACGCCTTACTG-AAGAGA-TAGA 916
Query 666 AAGGGTTGCTCACTATTTGGATGCCAAGAGCGAAGCGAAGATTACTAGTGTGGTTGA-AA 724
||||| || ||||| || |||||||||||||||| ||||||||||||||||||||| ||
Sbjct 917 GAGGGTAGCGCACTACTTAGATGCCAAGAGCGAAGAGAAGATTACTAGTGTGGTTGAGAA 976
Query 725 GAGAAATGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTA 784
||| |||||||| ||||| |||||||||| ||||| |||||||| |||||| ||||||
Sbjct 977 -AGAGATGATTGCCAACCACATGCAGAGACTGGTTCACATGGAGAACTCAGGTCTGGTTA 1035
Query 785 ATATGCTTTTGAATGATAAGTATGAGGATATGGGTAGAATGTACAGTTTGTTCCGCAGGG 844
|||||||| ||||||| |||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 1036 ATATGCTTCTGAATGACAAGTATGAGGATTTGGGTAGAATGTACAACTTGTTTCGCAGGG 1095
Query 845 TTGCCAATGGTCTTGTTACTATTAGAGATGTTATGACTTTGCATCTTAGGGAGATGGGAA 904
|| | ||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||
Sbjct 1096 TTACTAATGGTCTTGTTACTGTCAGAGACGTTATGACTTCGCATCTTAGGGAGATGGGAA 1155
Query 905 AACAGCTGGTTACCGATCCAGAGAAA-TCAAAGGTTCCCGTTGAATTTGTGCAGCGTCTA 963
|||| |||||||| ||||| || ||| ||||||| ||| || |||||||| || ||||||
Sbjct 1156 AACAACTGGTTACTGATCCGGA-AAAGTCAAAGGATCCGGTGGAATTTGTACAACGTCTA 1214
Query 964 TTAGATGAGCGGGATAAGTATGACAAAATTATCAACATGGCATTTAACAACGATAAGACG 1023
|| |||||||||||||| ||||||||||| ||||||| |||||| ||| ||||| ||
Sbjct 1215 TTGGATGAGCGGGATAAATATGACAAAATCATCAACACCGCATTTGGCAATGATAAAACC 1274
Query 1024 TTCCAGAATGCGCTGAATTCTTCGTTTGAGTATTTCCTCAACTTGAACACCCGTTCTCCT 1083
|| |||||||| ||||||||||| || ||||||||| |||||||||| | |||||||||
Sbjct 1275 TTTCAGAATGCCCTGAATTCTTCATTCGAGTATTTCATCAACTTGAATGCTCGTTCTCCT 1334
Query 1084 GAGTTTATCTCCTTGTTTGTTGATGATAAACTACGAAAAGGACTAAAAGGTGTGGGGGAG 1143
|||||||||||| ||||||||||||| || ||||| |||||||| || ||| | ||
Sbjct 1335 GAGTTTATCTCCCTGTTTGTTGATGACAAGCTACGGAAAGGACTTAAGGGTATCACCGAT 1394
Query 1144 GAGGATGTGGATCTTATTCTTGATACGGTGATGATGTTGTTTCGCTATTTACAGGAGAAA 1203
| |||||| || |||| ||||||| ||||||||| |||| || |||||||| ||||||
Sbjct 1395 GTGGATGTTGAGGTTATCCTTGATAAAGTGATGATGCTGTTCCGTTATTTACAAGAGAAA 1454
Query 1204 GACGTTTTTGAGAAATACTACAAACAACGTCTGGCAAAAAGGCTTTTATCTGGAAAAACT 1263
|| || |||||||| |||||||| || | | |||| ||||||||| | || || ||||||
Sbjct 1455 GATGTCTTTGAGAAGTACTACAAGCAGCATTTGGCTAAAAGGCTTCTCTCAGGCAAAACT 1514
Query 1264 GTGTCGGATGATGCTGAGAGGAATCTGATAGTTAAACTGAAGACAGAATGTGGGTATCAG 1323
||||| ||||| || || |||| | | ||||| ||||| |||||||||||||| ||||||
Sbjct 1515 GTGTCAGATGACGCAGAAAGGAGTTTAATAGTGAAACTAAAGACAGAATGTGGCTATCAG 1574
Query 1324 TTCACTTCGAAACTGGAAGGTATGTTCACTGACATGAAGACCTCACACGATACACTGC-T 1382
|||||||| ||| ||||||| |||||||||||||||||||| ||| | || ||| ||| |
Sbjct 1575 TTCACTTCAAAATTGGAAGGCATGTTCACTGACATGAAGACTTCAGAGGACACAATGCGT 1634
Query 1383 AGGATTTTATAATAGCCATCCCGAGCTTTCAGAAGGACCGACACTTGTTGTTCAG 1437
|| |||||| || || |||||||||||||||||||| |||||| ||||||||
Sbjct 1635 GGG-TTTTATGGCAGTCACCCCGAGCTTTCAGAAGGACCTACACTTATTGTTCAG 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101555702535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5