BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476100 Length=2049 Score E Sequences producing significant alignments: (Bits) Value AT1G69670.1 | Symbols: CUL3B, ATCUL3B | cullin 3B | chr1:262020... 2121 0.0 AT1G26830.1 | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 ... 1230 0.0 > AT1G69670.1 | Symbols: CUL3B, ATCUL3B | cullin 3B | chr1:26202031-26204442 REVERSE LENGTH=2337 Length=2337 Score = 2121 bits (1148), Expect = 0.0 Identities = 1338/1427 (94%), Gaps = 24/1427 (2%) Strand=Plus/Plus Query 32 TTGATCCAAAATACGCCGATAAAACTTGGAAGATTCTGGAACATGCGATTCATGAGATTT 91 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 59 TTGATCCAAAATACGCCGATAAAACTTGGAAGATCCTTGAACATGCGATTCATGAGATTT 118 Query 92 ACAATCACAACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGG 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 ACAATCACAACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGG 178 Query 152 TTCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATTTCATC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TTCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATTTCATC 238 Query 212 TCAAAGAGATATGTAAGTCTATTGAAGAAGCTCATGGAGGTGC-TTTCTTAGAATTGCTT 270 |||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||| Sbjct 239 TCAAAGAGATATGTAAGTCTATTGAAGAAGCTCAAGGAGGAGCATTT-TTAGAATTGCTT 297 Query 271 GATAGGAAATGGAATCATCACAACAAAGCGTTGC-AA--A-T---G--------A--T-T 312 |||||||||||||| |||| ||||||||||||| || | | | | | | Sbjct 298 AATAGGAAATGGAATGATCATAACAAAGCGTTGCAAATGATTAGGGATATTCTCATGTAT 357 Query 313 ATGGATCGGACTTACGTTTCTAGTACTAAGAAAAGGCATGTTCATGAGCTTGGACTTCAT 372 |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 358 ATGGATCGTACTTACGTTTCTACTACTAAGAAAACTCATGTTCATGAGCTTGGACTTCAT 417 Query 373 CTTTGGAGGGATAATGTTGTGTATTCGAGTAAGATTCAGACTAGGCTTTTGAATACGCTT 432 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 418 CTCTGGAGAGATAATGTTGTGTATTCGAGTAAGATTCAGACTAGGCTATTGAATACGCTT 477 Query 433 CTTGATTTAGTTTATAAGGAACGGACCGGTGAAGTTATAGATAGGTTGTTGATGAGGAAT 492 |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 478 CTTGATTTAGTTCATAAGGAACGGACTGGTGAAGTTATAGATAGGGTGTTGATGAGGAAT 537 Query 493 GTGATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGATGATTTCGAGAAGCCG 552 ||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 538 GTGATTAAGATGTTTATGGATTTAGGTGAATCTGTTTATCAAGATGATTTTGAGAAGCCG 597 Query 553 TTTTTGGAAGCTTCTGCTGAGTTTTACAAGGTTGAGTCACA-GGGGTTTATTGAGTCTTG 611 |||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||| Sbjct 598 TTTTTGGAAGCTTCTGCTGAGTTTTATAAGGTTGAGTCA-ATGGAGTTTATTGAGTCTTG 656 Query 612 TGATTGTGGTGATTATTTGAAGAAAGCGGAGAAACCTTTTGTGGAAGAAGTCGAAAGGGT 671 |||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 657 TGATTGTGGTGAGTATTTGAAGAAAGCTGAGAAGCCTTTAGTGGAAGAAGTCGAAAGGGT 716 Query 672 TGCT-CACTATTTGGATGCCAAGAGCGAAGCGAAGATTACTAGTGTGGTTGAAAGAGAAA 730 || | | ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 717 TG-TGAATTATTTGGATGCTAAGAGCGAAGCGAAGATTACTAGTGTGGTTGAAAGAGAGA 775 Query 731 TGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTAATATGC 790 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTAATATGC 835 Query 791 TTTTGAATGATAAGTATGAGGATATGGGTAGAATGTACAGTTTGTTCCGCAGGGTTGCCA 850 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 836 TTTTGAATGATAAGTATGAGGATATGGGTAGAATGTATAGTTTGTTCCGTAGGGTTGCTA 895 Query 851 ATGGTCTTGTTACTATTAGAGATGTTATGACTTTGCATCTTAGGGAGATGGGAAAACAGC 910 |||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 896 ATGGTCTTGTAACGGTTAGAGATGTTATGACTTTGCATCTTAGGGAAATGGGAAAACAGT 955 Query 911 TGGTTACCGATCCAGAGAAATCAAAGGTTCCCGTTGAATTTGTGCAGCGTCTATTAGATG 970 ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||| Sbjct 956 TGGTTACTGATCCAGAGAAATCAAAGGATCCGGTTGAATTTGTGCAGCGTCTATTGGATG 1015 Query 971 AGCGGGATAAGTATGACAAAATTATCAACATGGCATTTAACAACGATAAGACGTTCCAGA 1030 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AGCGGGATAAGTATGACAGAATTATCAACATGGCATTTAACAACGATAAGACGTTCCAGA 1075 Query 1031 ATGCGCTGAATTCTTCGTTTGAGTATTTCCTCAACTTGAACACCCGTTCTCCTGAGTTTA 1090 ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1076 ATGCGCTAAATTCTTCGTTTGAGTATTTCGTCAACTTGAACACACGTTCTCCTGAGTTTA 1135 Query 1091 TCTCCTTGTTTGTTGATGATAAACTACGAAAAGGACTAAAAGGTGTGGGGGAGGAGGATG 1150 ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1136 TCTCCCTGTTTGTTGATGATAAGCTACGAAAAGGACTAAAAGGTGTGGGAGAGGAGGATG 1195 Query 1151 TGGATCTTATTCTTGATACGGTGATGATGTTGTTTCGCTATTTACAGGAGAAAGACGTTT 1210 | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1196 TCGATCTTATTCTTGATAAGGTGATGATGTTGTTTCGCTACTTACAGGAGAAAGACGTTT 1255 Query 1211 TTGAGAAATACTACAAACAACGTCTGGCAAAAAGGCTTTTATCTGGAAAAACTGTGTCGG 1270 |||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||||| Sbjct 1256 TTGAGAAATATTACAAACAGCATCTGGCGAAAAGGCTTTTATCTGGAAAAACTGTGTCGG 1315 Query 1271 ATGATGCTGAGAGGAATCTGATAGTTAAACTGAAGACAGAATGTGGGTATCAGTTCACTT 1330 ||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 1316 ATGATGCAGAGAGGAATCTGATAGTGAAACTGAAGACGGAATGTGGGTATCAATTCACTT 1375 Query 1331 CGAAACTGGAAGGTATGTTCACTGACATGAAGACCTCACACGATACACTGCTAGGATTTT 1390 ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1376 CGAAACTTGAAGGTATGTTCACTGACATGAAGACCTCACACGACACGCTGCTAGGATTTT 1435 Query 1391 ATAATAGCCATCCCGAGCTTTCAGAAGGACCGACACTTGTTGTTCAG 1437 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1436 ATAATAGCCATCCCGAGCTTTCAGAAGGACCTACACTTGTTGTTCAG 1482 Score = 568 bits (307), Expect = 1e-160 Identities = 331/343 (97%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 1435 CAGCCAACCATACAGTGTAACCTACCTGCAGAAGTTTCTGTTCTGTGTGAGAAGTTCAGG 1494 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1510 CAGCCAACCATACAATGTAACCTACCTGCAGAAGTTTCTGTTCTGTGTGAGAAGTTCAGG 1569 Query 1495 TCATATTACCTCGGGACTCACACCGGCATGAAATTGTCTTGGCAAACCAATATGGAAACA 1554 |||||||||||||||||||||||||| | || ||||||||||||||| ||||||| |||| Sbjct 1570 TCATATTACCTCGGGACTCACACCGGTAGGAGATTGTCTTGGCAAACGAATATGGGAACA 1629 Query 1555 GCAGATATCAAAGCAGTGTTTGGAAAGGGTCAGAAGCTTGAACTAAATGTTTCGACTTTT 1614 ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1630 GCAGATATCAAAGCAGTGTTTGGAAAGGGTCAGAAGCATGAACTAAACGTTTCGACTTTC 1689 Query 1615 CAAATGTGTGTCCTTATGTTGTTCAACAACTCTGATCGACTGAGCTACAAAGAGATCGAA 1674 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1690 CAAATGTGTGTCCTTATGTTGTTCAACAACTCTGATCGACTAAGCTACAAAGAGATCGAA 1749 Query 1675 CAGGCAACTGAAATCCCCACCTCAGACCTAAAGCGTTGCTTGCATTCAATGGCGTGTGTA 1734 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1750 CAGGCAACTGAAATCCCCACCCCAGACCTAAAGCGTTGCTTGCAGTCAATGGCGTGTGTA 1809 Query 1735 AAAGGTAAAAACGTGCTAAGAAAAGAACCAATGAGCAAGGAGA 1777 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1810 AAAGGTAAAAACGTGCTAAGAAAAGAACCAATGAGCAAGGAGA 1852 Score = 300 bits (162), Expect = 4e-80 Identities = 180/189 (95%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1861 GTGAGGATTATGAAGGCAAGACGAGTGTTGGATCACAACAACATTATCGCAGAGGTCACC 1920 |||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||| Sbjct 2014 GTGAGGATAATGAAGTCTAGACGAGTGTTGGATCACAACAACATAATCGCAGAGGTCACC 2073 Query 1921 AAACAGTTGCAGTCGCGGTTCTTGGCAAACCCAACAGAGATAAAGAAGAGAATTGAATCG 1980 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2074 AAACAGTTGCAGACGCGGTTCTTGGCAAACCCAACAGAGATAAAGAAGAGAATTGAATCA 2133 Query 1981 CTCATTGAGCGTGATTTCTTGGGGAGGGATAATACAGACCGAAAACTTTACCGCTATTTA 2040 |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || Sbjct 2134 CTCATTGAGCGTGATTTCTTGGAGAGGGATAATACAGACCGGAAACTTTACCGCTATCTA 2193 Query 2041 GCGTAAAAA 2049 ||||||||| Sbjct 2194 GCGTAAAAA 2202 Score = 65.8 bits (35), Expect = 2e-09 Identities = 35/35 (100%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGA 35 ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTAATCAGAAGAAGAGAAATTTCCAGATTGA 35 > AT1G26830.1 | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9295736-9298541 FORWARD LENGTH=2572 Length=2572 Score = 1230 bits (666), Expect = 0.0 Identities = 1186/1435 (83%), Gaps = 44/1435 (3%) Strand=Plus/Plus Query 34 GATCCAAAATACGCCGATAAAACTTGGAAGATTCTGGAACATGCGATTCATGAGATTTAC 93 ||||| |||||||| |||||||||||| ||||||| || | |||||| ||| |||||||| Sbjct 267 GATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCCATCAGATTTAC 326 Query 94 AATCACA-ACGCTAGTGGTCTCAGTTTCGAAGAGCTTTACAGAAACGCATACAACATGGT 152 ||||| | | ||||| ||||||||||||||||| ||||||||||| || ||||||||||| Sbjct 327 AATCA-AGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGTACAACATGGT 385 Query 153 TCTACATAAGTATGGTGATAAGCTTTATACTGGACTTGTTACCACTATGACATT-TCATC 211 || || |||| |||||| ||||| |||||||| || || | |||||||| || ||||| Sbjct 386 CCTGCACAAGTTTGGTGAGAAGCTATATACTGGGTTTATTGCTACTATGAC-TTCTCATC 444 Query 212 TCAAAGAGATATGTAAGTC-TATTGAAGAAGCTCATGGA-GGTGC-TTTCTTAGAATTGC 268 ||||||| | || ||| | ||| || | |||||| ||| ||| | |||| ||||| || Sbjct 445 TCAAAGAAAAATCCAAG-CTTATCGAGGCAGCTCAGGGAGGGT-CGTTTC-TAGAAGAGC 501 Query 269 TTGATAGGAAATGGAATCATCACAACAAAGCG-T-----TG---C-A-A-A---TGA--T 311 || ||| |||||||||| | |||||||||||| | || | | | | | | | Sbjct 502 TTAATAAGAAATGGAATGAGCACAACAAAGCGTTAGAGATGATTCGAGACATTCTCATGT 561 Query 312 -TATGGATCGGACTTACGTTTCTAGTACTAAGAAA-AGGCATGTTCATGAGCTTGGACTT 369 ||||||| ||||||| || || || || ||| | ||||||||| | | || ||| Sbjct 562 ATATGGATAGGACTTATATTGAGAGCACCAA-AAAGACTCATGTTCATCCGATGGGGCTT 620 Query 370 CATCTT-TGGAGGGATAATGTTGTGTA-TTCGAGTAAGATTCAGACTAGGCTTTTGAATA 427 | ||| |||||||||||||||||| | ||| | |||||| || || |||||| | || | Sbjct 621 -AACTTGTGGAGGGATAATGTTGTGCATTTC-ACTAAGATACATACAAGGCTTCTAAACA 678 Query 428 CGCTTCTTGATTTAGTTTATAAGGAACGGACCGGTGAAGTTATAGATAGGTTGTTGATGA 487 | ||||||||| |||| | |||||||||| ||||||||||| |||||| |||||||| Sbjct 679 CTCTTCTTGATCTAGTGCAGAAGGAACGGATAGGTGAAGTTATTGATAGGGGGTTGATGA 738 Query 488 GGAATGTGATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGATGATTTCGAGA 547 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 739 GGAATGTCATTAAGATGTTTATGGATTTGGGTGAATCTGTGTATCAGGAGGATTTTGAGA 798 Query 548 AGCCGTTTTTGGAAGCTTCTGCTGAGTTTTACAAGGTTGAGTCACAGGGGTTTATTGAGT 607 ||||||||||||| || ||| |||||||||| ||||||||||| |||| ||||||||| | Sbjct 799 AGCCGTTTTTGGATGCGTCTTCTGAGTTTTATAAGGTTGAGTCTCAGGAGTTTATTGAAT 858 Query 608 CTTGTGATTGTGGTGATTATTTGAAGAAAGCGGAGAAAC-CTTTTGTGGAAGA-AGTCGA 665 ||||||||||||| || ||| |||||||| | ||||||| | || || |||| | | || Sbjct 859 CTTGTGATTGTGGGGACTATCTGAAGAAATCAGAGAAACGCCTTACTG-AAGAGA-TAGA 916 Query 666 AAGGGTTGCTCACTATTTGGATGCCAAGAGCGAAGCGAAGATTACTAGTGTGGTTGA-AA 724 ||||| || ||||| || |||||||||||||||| ||||||||||||||||||||| || Sbjct 917 GAGGGTAGCGCACTACTTAGATGCCAAGAGCGAAGAGAAGATTACTAGTGTGGTTGAGAA 976 Query 725 GAGAAATGATTGCTAACCATGTGCAGAGACTAGTTCATATGGAGAATTCAGGTTTGGTTA 784 ||| |||||||| ||||| |||||||||| ||||| |||||||| |||||| |||||| Sbjct 977 -AGAGATGATTGCCAACCACATGCAGAGACTGGTTCACATGGAGAACTCAGGTCTGGTTA 1035 Query 785 ATATGCTTTTGAATGATAAGTATGAGGATATGGGTAGAATGTACAGTTTGTTCCGCAGGG 844 |||||||| ||||||| |||||||||||| ||||||||||||||| ||||| ||||||| Sbjct 1036 ATATGCTTCTGAATGACAAGTATGAGGATTTGGGTAGAATGTACAACTTGTTTCGCAGGG 1095 Query 845 TTGCCAATGGTCTTGTTACTATTAGAGATGTTATGACTTTGCATCTTAGGGAGATGGGAA 904 || | ||||||||||||||| | ||||| |||||||||| |||||||||||||||||||| Sbjct 1096 TTACTAATGGTCTTGTTACTGTCAGAGACGTTATGACTTCGCATCTTAGGGAGATGGGAA 1155 Query 905 AACAGCTGGTTACCGATCCAGAGAAA-TCAAAGGTTCCCGTTGAATTTGTGCAGCGTCTA 963 |||| |||||||| ||||| || ||| ||||||| ||| || |||||||| || |||||| Sbjct 1156 AACAACTGGTTACTGATCCGGA-AAAGTCAAAGGATCCGGTGGAATTTGTACAACGTCTA 1214 Query 964 TTAGATGAGCGGGATAAGTATGACAAAATTATCAACATGGCATTTAACAACGATAAGACG 1023 || |||||||||||||| ||||||||||| ||||||| |||||| ||| ||||| || Sbjct 1215 TTGGATGAGCGGGATAAATATGACAAAATCATCAACACCGCATTTGGCAATGATAAAACC 1274 Query 1024 TTCCAGAATGCGCTGAATTCTTCGTTTGAGTATTTCCTCAACTTGAACACCCGTTCTCCT 1083 || |||||||| ||||||||||| || ||||||||| |||||||||| | ||||||||| Sbjct 1275 TTTCAGAATGCCCTGAATTCTTCATTCGAGTATTTCATCAACTTGAATGCTCGTTCTCCT 1334 Query 1084 GAGTTTATCTCCTTGTTTGTTGATGATAAACTACGAAAAGGACTAAAAGGTGTGGGGGAG 1143 |||||||||||| ||||||||||||| || ||||| |||||||| || ||| | || Sbjct 1335 GAGTTTATCTCCCTGTTTGTTGATGACAAGCTACGGAAAGGACTTAAGGGTATCACCGAT 1394 Query 1144 GAGGATGTGGATCTTATTCTTGATACGGTGATGATGTTGTTTCGCTATTTACAGGAGAAA 1203 | |||||| || |||| ||||||| ||||||||| |||| || |||||||| |||||| Sbjct 1395 GTGGATGTTGAGGTTATCCTTGATAAAGTGATGATGCTGTTCCGTTATTTACAAGAGAAA 1454 Query 1204 GACGTTTTTGAGAAATACTACAAACAACGTCTGGCAAAAAGGCTTTTATCTGGAAAAACT 1263 || || |||||||| |||||||| || | | |||| ||||||||| | || || |||||| Sbjct 1455 GATGTCTTTGAGAAGTACTACAAGCAGCATTTGGCTAAAAGGCTTCTCTCAGGCAAAACT 1514 Query 1264 GTGTCGGATGATGCTGAGAGGAATCTGATAGTTAAACTGAAGACAGAATGTGGGTATCAG 1323 ||||| ||||| || || |||| | | ||||| ||||| |||||||||||||| |||||| Sbjct 1515 GTGTCAGATGACGCAGAAAGGAGTTTAATAGTGAAACTAAAGACAGAATGTGGCTATCAG 1574 Query 1324 TTCACTTCGAAACTGGAAGGTATGTTCACTGACATGAAGACCTCACACGATACACTGC-T 1382 |||||||| ||| ||||||| |||||||||||||||||||| ||| | || ||| ||| | Sbjct 1575 TTCACTTCAAAATTGGAAGGCATGTTCACTGACATGAAGACTTCAGAGGACACAATGCGT 1634 Query 1383 AGGATTTTATAATAGCCATCCCGAGCTTTCAGAAGGACCGACACTTGTTGTTCAG 1437 || |||||| || || |||||||||||||||||||| |||||| |||||||| Sbjct 1635 GGG-TTTTATGGCAGTCACCCCGAGCTTTCAGAAGGACCTACACTTATTGTTCAG 1688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101555702535 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5