BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476101
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69690.1 | Symbols: | TCP family transcription factor | ch... 1901 0.0
> AT1G69690.1 | Symbols: | TCP family transcription factor |
chr1:26216224-26217851 FORWARD LENGTH=1628
Length=1628
Score = 1901 bits (1029), Expect = 0.0
Identities = 1163/1222 (95%), Gaps = 31/1222 (3%)
Strand=Plus/Plus
Query 1 ctctctctctctcGGACATAGACACAGCTAAGCTTCCCATCTGAAAGGAGTTTCATGTCC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCAGACATAGACACAGCTAAGCTTCCCATCTGAAAGGAGTTTCATGTCC 60
Query 61 TTAAGGACC--A-TATAACCTCTCTATCTCTCTCTAAGTAGCAGCaaaaaaaCAGAGATT 117
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 -TAAGGACCATATTATAACCTCTCTATCTCTCTCTAAGTATCAGCAAAAAAACAGAGATT 119
Query 118 TATAGAGAGAG---AAAACTATGGCTCACATAAAGATCTAACAGAGACAGTAGTATAGTC 174
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TATAGAGAGAGAAAAAAACTATGGCTCACATAAAGATCTAACAGAGACAGTAGTATAGTC 179
Query 175 CCACTTCCCCACCACCAAAGCTTCgatcatcatcatca--a-catcatggatccggatcc 231
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 180 CCACTTCCCCACCACCAAAGCTTCGATCATCATCATCATCATCATCATGGATCCGGATCC 239
Query 232 ggatcataacccgaatcatcatcGACCCAACTTCCCTCTCCAGCTTCTTGATTCTTCT-- 289
||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGATCAT------AA-C--CATCGACCCAACTTCCCTCTCCAGCTTCTTGATTCTTCTAC 290
Query 290 -TCCTCCTCTTCCACTTCCTTAGCCATCATCTCTGCTACTTCCGAACCTAACTCCGAACC 348
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 291 CTCCTCCTCTTCCACTTCCTTAGCCATCATCTCTACTACTTCCGAACCTAACTCCGAACC 350
Query 349 TAAGAAGCCTCCTCCTAAACGAACCTCTACTAAAGACCGACACACCAAAGTCGAAGGCCG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TAAGAAGCCTCCTCCTAAACGAACCTCTACTAAAGACCGACACACCAAAGTCGAAGGCCG 410
Query 409 AGGCCGTCGGATCCGTATGCCTGCCATGTGCGCTGCACGTGTCTTTCAGCTCACTCGTGA 468
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 411 AGGCCGTCGGATCCGTATGCCTGCCATGTGTGCTGCACGTGTCTTTCAGCTCACACGTGA 470
Query 469 GCTTGGTCACAAATCCGACGGTGAAACTATTGAGTGGCTACTCCAACAAGCTGAGCCAGC 528
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 471 GCTTGGTCACAAATCCGACGGTGAAACTATTGAGTGGCTACTCCAACAAGCAGAACCAGC 530
Query 529 GGTTATAGCCGCTACAGGAACTGGAACCATTCCTGCTAACTTCACTTCTTTAAACATCTC 588
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 531 GGTTATAGCCGCTACAGGGACTGGAACCATTCCGGCTAACTTCACTTCTTTAAACATCTC 590
Query 589 ACTTCGTAGCTCAAGATCTTCTCTCTCTGCTGCTCATCTTCGTACAACTCCTAGTAGCTA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACTTCGTAGCTCAAGATCTTCTCTCTCTGCTGCTCATCTTCGTACAACTCCTAGTAGCTA 650
Query 649 TTACTTTCATTCACCACATCAGTCCATGACTCATCATCTTCAACATCAGCATCAGGTTCG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTACTTTCATTCACCACATCAGTCCATGACTCATCATCTTCAACATCAGCATCAGGTTCG 710
Query 709 TCCCAAGAACGAGTCACATTCTTCGTCTTCTTCTTCTTCACAGCTTTTAGATCACAACCA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCCCAAGAACGAGTCACATTCTTCGTCTTCTTCTTCTTCACAGCTTTTAGATCACAACCA 770
Query 769 AATGGGGAACTATCTAGTACAATCAACTGCTGGATCTTTACCTACGAGTCAGAGTCCTGC 828
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AATGGGTAACTATCTAGTACAATCAACTGCTGGATCTTTACCTACGAGTCAGAGTCCTGC 830
Query 829 TACGGCACCGTTTTGGAGTAGTGGTGACAACACACAGAATCTTTGGGCGTTTAATATCAA 888
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 831 AACGGCACCGTTTTGGAGTAGTGGTGACAACACACAGAATCTTTGGGCTTTTAATATTAA 890
Query 889 TCCTCATCATTCCGGTGTTGTGGCCGGAGATGTTTATAACCCCAACGGTGGTGGTGGTGG 948
||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||
Sbjct 891 TCCTCATCATTCCGGTGTTGTCGCCGGAGATGTTTACAACCCCAACAGTGGTGGTAGTGG 950
Query 949 CGGTAGTGGAGCTGGCGGTGGAGTTCATTTGATGAACTTTGCAGCTCCTATTGCTTTGTT 1008
||| || || ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 951 CGGCGGT--AG-TGG------AGTTCATTTGATGAATTTTGCAGCTCCTATTGCTTTGTT 1001
Query 1009 TTCTGGACAGCCTTTGGCTTCTGGTTATGGAGGAGGAGGAGGTGGCGGCGGAGAACATAG 1068
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1002 TTCTGGACAGCCTTTGGCTTCTGGTTATGGAGGAGGAGGAGGTGGCGGTGGAGAACATAG 1061
Query 1069 CCATTATGGAGTTTTAGCGGCTTTGAATGCTACTTACCGGCCGGTGGCTGAGACGGCGAA 1128
||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| |||
Sbjct 1062 CCATTATGGAGTTTTAGCGGCGTTGAATGCTGCTTACCGACCGGTGGCGGAGACGGGGAA 1121
Query 1129 CCATAACAACAACCAACAAAACCGCGACGGAGATCATCATCACAACCATCAAGAAGATGG 1188
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1122 CCATAACAACAACCAGCAAAACCGTGACGGAGATCATCATCACAACCATCAAGAAGATGG 1181
Query 1189 AAGCACCAGTCATCATTCCTAG 1210
||||||||||||||||||||||
Sbjct 1182 AAGCACCAGTCATCATTCCTAG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5