BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476102
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69700.1 | Symbols: ATHVA22C, HVA22C | HVA22 homologue C | c... 989 0.0
> AT1G69700.1 | Symbols: ATHVA22C, HVA22C | HVA22 homologue C |
chr1:26220238-26221825 FORWARD LENGTH=816
Length=816
Score = 989 bits (535), Expect = 0.0
Identities = 617/655 (94%), Gaps = 12/655 (2%)
Strand=Plus/Plus
Query 23 AGAGAAAGAGA-GAACaaaaaaaGGGAAAGCTTAAGAAATTGGAGAGTAACAATGCCTTC 81
||||| ||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 49 AGAGAGAGAGAGGAA-AAAAAAGGGGAAAGCTTAAGATATTGGAGAGTAACAATGCCTTC 107
Query 82 AAATTCTGGAGATGATAATGTTCTTCAAGTTCTCATCAAGAACTTCGATGTCCTTGCTCT 141
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 108 AAATTCAGGAGATGATAATGTTCTTCAAGTTCTCATAAAGAACTTTGATGTCCTTGCTCT 167
Query 142 CCCATTGGTTACACTCGTCTATCCTCTATATGCATCAGTGAAAGCAATAGAGACAAGATC 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CCCATTGGTTACACTCGTCTATCCTCTATATGCATCAGTGAAAGCAATAGAGACAAGATC 227
Query 202 ATTACCAGAAGATGAACAATGGCTCACTTACTGGGTTCTTTACGCACTCATCTCTCTCTT 261
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 228 ATTACCAGAAGATGAACAATGGCTTACTTACTGGGTTCTTTACGCACTTATCTCTCTCTT 287
Query 262 TGAACTCACTTTCTCCAAACCTCTCGAGTGGTTTCCGATATGGCCATACATGAAGTTGTT 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 288 TGAACTCACTTTCTCCAAACCTCTCGAGTGGTTTCCTATATGGCCATACATGAAGTTGTT 347
Query 322 TGGGATATGTTGGTTAGTGTTACCACAATTTAATGGAGCAGAACATATCTACAAACATTT 381
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 348 TGGGATCTGTTGGTTAGTGTTACCACAATTCAATGGAGCAGAACATATCTACAAACATTT 407
Query 382 CATAAGACCATTCTACAGAGATCCTCAAAGAGCTACCACCAAAATTTGGTATGTTCCTCA 441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CATTAGACCATTCTACAGAGATCCTCAAAGAGCTACCACCAAAATTTGGTATGTTCCTCA 467
Query 442 TAAGAAATTCAATTTCTTCCCTAAACGCGACGATGACGACATCCTCACTGCTGCTGAGAA 501
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 468 CAAGAAATTCAATTTCTTCCCTAAACGCGACGACGACGACATTCTCACTGCTGCTGAAAA 527
Query 502 ATACATGGAACAACATGGTACTGAGGCGTTTGAGCGAATGATCGTTAGGAAGGATAGTTA 561
||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 528 ATACATGGAACAACACGGTACCGAAGCGTTTGAGCGAATGATCGTTAAGAAGGATAGTTA 587
Query 562 TGAAAGAGGAAGGAGTAGTAGAGGAA-CTAATAATTACATGATCTTTGATGATGATTATA 620
||||||||| |||||||||||||||| | |||||| ||||||||||||||||||| ||||
Sbjct 588 TGAAAGAGGTAGGAGTAGTAGAGGAATC-AATAATCACATGATCTTTGATGATGACTATA 646
Query 621 GGTACTAAGTTTATGTTCATTAAACCGGTTTA----GCTACTTTCACTTCATAAG 671
|||||||| | | |||| ||||||||||||| |||||||||| || |||||
Sbjct 647 GGTACTAA-TA-A-GTTC-TTAAACCGGTTTAATTAGCTACTTTCAGTTTATAAG 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5