BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476103
Length=3214
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69710.1 | Symbols: | Regulator of chromosome condensation ... 5192 0.0
AT1G42680.1 | Symbols: | P-loop containing nucleoside triphosp... 167 7e-40
> AT1G69710.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain | chr1:26222072-26226652
FORWARD LENGTH=3501
Length=3501
Score = 5192 bits (2811), Expect = 0.0
Identities = 3087/3220 (96%), Gaps = 19/3220 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATTCCTCGAGAATTAGTCTCTCTGAGAGAGACGTTGAACAGGCCATTACGTCG 60
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 293 ATGGCTGATTCCTTGAGAACTAGTTTCTCTGAGAGAGACGTTGAACAGGCCATTACGTCA 352
Query 61 CTTAAGAAAGGGTCTTACTTGTTGAAATATGGACGTAGAGGGAAGCCCAAGTTTTGTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 353 CTTAAGAAAGGGTCTTACTTGTTGAAATATGGACGTAGAGGGAAGCCTAAGTTTTGTCCA 412
Query 121 TTCCAGCTAACAAGTGACGAGTCTGCATTAGTATGGTACTCTGGCAAAGAAGAGAAGCAG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTCCAGCTCACAAGTGACGAGTCTGCATTAGTATGGTACTCTGGCAAAGAAGAGAAGCAG 472
Query 181 ATTAAGCTGAGTCAAGTCCTGAGAATTGTTCCTGGACAACGCACGTCTACATTTAAGAGA 240
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 473 ATTAAACTGAGTCAAGTCCTGAGAATTGTTCCTGGACAACGCACGCCTACATTTAAGAGA 532
Query 241 TATCCACGCCCCGAGAAAGAGTATCAGTCATTTTCGCTCATATGTCCTGACAGGTCCTTG 300
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 533 TATCCACGCCCCGAGAAAGAGTATCAGTCATTCTCCCTCATATGTCCTGACAGGTCGTTG 592
Query 301 GATTTGATATGTAAAGACAAAGATGAAGCAGAAGTTTGGGTTGTTGGTTTGAAGTCATTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GATTTGATATGTAAAGACAAAGATGAAGCAGAAGTTTGGGTTGTTGGTTTGAAGTCATTG 652
Query 361 ATTACTCGGGTAAAAGTCTCCAAATGGAAAAACACTATTAAACCTGAGATCACTTCGGCG 420
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 653 ATTACTCGGGTAAAAGTCTCCAAATGGAAAACCACTATTAAACCTGAGATCACTTCAGCG 712
Query 421 GAATGTCCAACCCCTCATGCACGAAGAGTGTCTCCATTTGTAACAATTCTTGATCAAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GAATGTCCAACCCCTCATGCACGAAGAGTGTCTCCATTTGTAACAATTCTTGATCAAGTT 772
Query 481 ATTCAACCCTCTAATGAGACTTCTACACAAACCCGGTTGGGGAAAGTGTTTTCTGACATT 540
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 773 ATTCAACCCTCTAATGAGACTTCTACACAAACTCGGTTGGGAAAAGTGTTTTCTGACATT 832
Query 541 GTTTCAATAACTGCACCCCCCAGTAACAATAATCAAACAGAAACCAGTGCCAACCTTTTC 600
||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 833 GTTGCAATAACTGCACCCCCCAGTAACAATAATCAAACAGAAGCCAGTGGCAACCTCTTC 892
Query 601 TGTCCATTTTCTCCGACTCCGGTAAATGTTGAAAATTCAAGTTTACGATTCTCGACCAAT 660
|||||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||
Sbjct 893 TGTCCATTTTCTCCGACTCCAGCAAACGTAGAAAATTCAAATTTACGATTCTCGACCAAT 952
Query 661 GACTCAATTCGGCTCAGTCTATCTAGCGCTGTCAGCACCTCTAGCCATGGTTCATATCAC 720
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 953 GACCCATTTCGGCTCAGTCTATCTAGCGCTGTGAGCACCTCTAGCCATGGTTCATATCAC 1012
Query 721 GAAGACTTTGATGCCTTAGGTGATGTTTTTGTCTGGGGTGAATCTATATGTGATGGTGTA 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1013 GAAGACTTTGATGCCTTAGGTGATGTTTTTGTCTGGGGTGAATCTATAAGTGATGGTGTA 1072
Query 781 CTTACCGGCACTGGGAATTCATTGAACTCCACGACAGAGGATGCCCTTTTACCAAAAGCA 840
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CTTAGCGGTACTGGAAATTCATTGAACTCCACGACAGAGGATGCCCTTTTACCAAAAGCA 1132
Query 841 TTAGAATCAACTATAGTACTTGATGCCCAAAACATTGCATGTGGTAAATGTCATGCGGTT 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TTAGAATCAACAATAGTACTTGATGCCCAAAACATTGCATGTGGTAAATGTCATGCGGTT 1192
Query 901 ATAGTTACCAAACAAGGAGAGATCTTCAGCTGGGGTGAGGGAAAAGGTGGAAAGCTAGGA 960
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTAGTTACTAAACAAGGAGAGATCTTCAGCTGGGGTGAGGGAAAAGGTGGAAAGCTAGGA 1252
Query 961 CATGGCTTAGAAACAGACGTCCAACAACCAAAGTTCATTAGTAGTGTCAGAGGATTGGGT 1020
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1253 CATGGCTTAGAAACAGACGCCCAAAAACCAAAGTTCATTAGTAGTGTCAGAGGATTGGGT 1312
Query 1021 TTCAAATCTTTAGCCTGCGGAGATTTCCATACATGCGCTATTACTCAATCTGGTGATCTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TTCAAATCTTTAGCCTGCGGAGATTTCCATACATGCGCTATTACTCAATCTGGTGATCTT 1372
Query 1081 TACAGTTGGGGTGATGGCACTCATAATGTCGATTTGCTTGGGCACGGGAATGAATCCAGC 1140
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1373 TACAGTTGGGGTGATGGCACTCATAACGTCGATTTGCTTGGGCATGGGAATGAATCCAGC 1432
Query 1141 TGCTGGATTCCCAAGAGAGTGACTGGTGCCTTACAGGGACTGTATGTATCATATGTCGCT 1200
||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1433 TGCTGGATTCCAAAGAGAGTGACTGGTGACTTACAGGGACTGTATGTATCAGATGTCGCT 1492
Query 1201 TGCGGTCCCTGGCATACAGCAGTAGTTGCATCATCAGGCCAGTTGTTCACGTTTGGAGAT 1260
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1493 TGCGGTCCCTGGCATACAGCAGTAGTTGCATCATCAGGCCAGTTGTTTACGTTTGGAGAT 1552
Query 1261 GGATCTTTTGGCGCTCTGGGTCATGGAGACCGGAGAAGCACAAGTGTTCCCCGTGAAGTT 1320
||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1553 GGAACTTTTGGTGCTCTGGGTCATGGAGACCGGAGAAGCACAAGTGTTCCACGTGAAGTT 1612
Query 1321 AAAATCCTAAGTGGACTAATAGTAACGAAGGTTGCGTGTGGCGTTTGGCATACAGCTGCA 1380
||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1613 GAAAGCCTAATTGGACTAATAGTAACAAAGGTTGCTTGTGGCGTTTGGCATACAGCTGCA 1672
Query 1381 CTGGTAGAAGTGACAAATGAAGCATCTGAGGCAGAAGTTGGCTCTTCACGCGGGCAAGTC 1440
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1673 GTGGTAGAAGTGACAAATGAAGCATCTGAGGCAGAAGTTGACTCTTCACGCGGGCAAGTC 1732
Query 1441 TTCACATGGGGGGATGGCGAGAAAGGCCAGCTTGGTCATGGTGACAATGATGCACAACTA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1733 TTCACATGGGGGGATGGCGAGAAAGGCCAGCTTGGTCATGGTGACAATGATACAAAACTA 1792
Query 1501 CTTCCCGAGTGTGTAATTTCATTGTCGAATGAAAATATCTGCCAAGTTGCCTGCGGACAT 1560
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1793 CTTCCCGAGTGTGTAATTTCATTGACGAATGAAAATATCTGCCAAGTTGCCTGCGGACAT 1852
Query 1561 AGTCTCACGGTTTCTCTTACATCCACAGGACATGTGTATACAATGGGTAGCACGGCTTAT 1620
|||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1853 AGTCTCACTGTTTCTCGTACATCCAGAGGACATGTGTATACAATGGGTAGCACGGCTTAT 1912
Query 1621 GGACAGCTTGGTAATCCTACCGCCAAGGGAAACTTTCCTGCACGTGTTGAAGGAGACATA 1680
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1913 GGACAGCTTGGTAATCCTACCGCCAAGGGAAATTTTCCTGAACGTGTTGAAGGAGACATT 1972
Query 1681 GTAGAGGCTTCTGTGGAGGAGATTGCGTGTGGTTCTTATCATGTTGCAGTTTTGACATCT 1740
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1973 GTAGAGGCTTCTGTGGAGGAGATTGCATGTGGTTCTTATCATGTTGCAGTTTTGACATCT 2032
Query 1741 AAATCAGAAATTTACACATGGGGAAAGGGATTAAATGGCCAGTTAGGCCATGGAACCATT 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2033 AAATCAGAAATTTACACATGGGGAAAGGGATTAAATGGCCAGTTAGGCCATGGAAACGTT 2092
Query 1801 GAGAACAAAAGAGAACCTGCGGTTGTGGGTTTTCTGAAAGAAAAGCAAGTGAAGGCTATA 1860
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2093 GAGAACAAAAGAGAACCTGCGGTTGTGGGTTTTCTGAGAGAAAAACAAGTGAAGGCTATA 2152
Query 1861 ACATGTGGATCAAACTTTACTGCTGTGATTTGTGTTCACAAATGGGTACCTGGCTCTGAA 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 ACATGTGGATCAAACTTTACTGCTGTGATTTGTGTTCACAAATGGGTACCTGGCTCTGAA 2212
Query 1921 CATTCTCTATGTGCTGGTTGCCGCAATCCCTTCAACTTTAGAAGAAAACGCCACAACTGT 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CATTCTCTATGTGCTGGTTGCCGCAATCCCTTCAACTTTAGAAGAAAACGCCACAACTGT 2272
Query 1981 TACAACTGTGGTCTGGTATTTTGTAAAGTATGCAGCAGTAGGAAGTCTCTGAGAGCTGCT 2040
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2273 TACAACTGTGGTCTGGTATTTTGTAAAGTATGCAGTAGTAGGAAGTCTCTGCGAGCTGCT 2332
Query 2041 CTGGCACCTGATATGAACAAACCATATCGAGTGTGTTACGGATGTTTTACCAAGCTGAAA 2100
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2333 CTGGCACCTGACATGAACAAACCATATCGAGTGTGTTACGGATGTTTCACCAAGCTGAAA 2392
Query 2101 AAGTCGAGAGAATCATCTCCTTCTACGCCAACTTCACGGGCCAGAAAACTTTTGAACATG 2160
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2393 AAGTCGAGAGAATCATCTCCTTCTACGCCAACTTCACGGACCAGAAAACTTTTGAACATG 2452
Query 2161 CGGAAATCGACAGATGTTTCAGAAAGAGACAGCTTAACTCAAAAGTTCCTCTCAGCGCAT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2453 CGGAAATCGACAGATGTTTCAGAAAGAGACAGCTTAACTCAAAAGTTCCTCTCAGTGAAC 2512
Query 2221 GCCAGAATATCGTCTGCTGACTCTTTATTGCATTACGGTGAAAGAAGGCACCACAGACGA 2280
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 2513 GCCAGACTATCGTCTGCTGACTCTTCATTGCATTACAGTGAAAGAAGGCACCACAGACGA 2572
Query 2281 GACTTAAAACCGGAAGTAAATAACAGTAATGTCTTCCCTTCCATGAATGGCAGTTTACAG 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2573 GACTTAAAACCGGAAGTAAATAACAGTAATGTCTTCCCTTCCATGAATGGCAGTTTACAG 2632
Query 2341 CTTGTTGGTTCGCCATTATCCAAAGGATCAACAGCTTTGCCTAAAATTCCCAAGAATATG 2400
| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2633 CCCGTTGGTTCGCCATTTTCCAAAGGATCAACAGCTTTGCCTAAAATCCCCAAGAATATG 2692
Query 2401 ATGGTTAAAATTCCTGGTTCAGGAATGAGCTCTCGCACAACATCCCCAGTTTCAGTAAAG 2460
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2693 ATGGTTAAAATTCCTGGTTCCGGAATGAGCTCTCGCACAACATCCCCAGTTTCAGTAAAG 2752
Query 2461 TCAACTAGTCCACGTCGATCTTATGAAGTAGCAGCTGCGGAATCTAAACAAATAAAAGAC 2520
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2753 TCAACTAGTCCACGTCGATCTTATGAAGTAGCAGCTGCAGAATCTAAACAATTAAAAGAC 2812
Query 2521 AGTTTTAGTCAAGATATGTCGGGTCTAAAGGAACAGGTAGAACAACTTACTTCCAAAACT 2580
||||||| |||||||||| | ||||||||||||||||||||||||||| |||| ||| ||
Sbjct 2813 AGTTTTAATCAAGATATGGCTGGTCTAAAGGAACAGGTAGAACAACTTGCTTCGAAAGCT 2872
Query 2581 CACCAACTTGAAGAGGAACTCGAAAAAACCAAAAGGCAGTTAAAAGTAGTCACTGCAATG 2640
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2873 CACCAACTTGAAGAGGAACTCGAAAAAACCAAAAGGCAGTTAAAAGTTGTGACTGCAATG 2932
Query 2641 GCAGCAGATGAAGCAGAAGAAAATAGATCTGCAAAGGAGGTTATTAGATCTCTCACCACT 2700
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2933 GCAGCAGATGAAGCAGAGGAAAATAGATCTGCAAAGGAGGTTATAAGATCTCTAACCACT 2992
Query 2701 CAGTTGAAGGAAATGGCTGAAAGACAATCTCAAAAGGAT-GCTATTAGCACCAACTCAAA 2759
||||||||||||||||| |||| |||||||||||||||| | ||||||||| ||||||||
Sbjct 2993 CAGTTGAAGGAAATGGCAGAAAAACAATCTCAAAAGGATAG-TATTAGCACTAACTCAAA 3051
Query 2760 GCGCACAGACAAAGAGACATCAGAGA-T--AACTCAGACTAGTAACCAAACACATATAAG 2816
|| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 3052 GCACACAGACAAAGAGAAATCAGAGACTGTAACTCAGACTAGTAACCAAACACATATAAG 3111
Query 2817 AAGCATGGTTTCTCATGATAGTCAACATGAGAACAATCTAACAAGTAGGAGCTTCGCTAA 2876
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 3112 AAGCATGGTTTCTCAAGATAGTCAAAATGAGAACAATCTAACAAGTAAGAGCTTCGCTAA 3171
Query 2877 TGGGCATAGGAAACAGAATGAGAAACCAGAAAGGGTTGTGCAAGACGAACCAGGAGTGTA 2936
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 3172 TGGGCATAGGAAACAGAATGATAAACCAGAAAAGGTTGTGCAAGACGAACCAGGAGTGTA 3231
Query 2937 TTTAACATTGTTGGCTTTACCTGGTGGTGGTACTGAACTCAAGCGTGTCCGGTTCAGCCG 2996
|||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3232 TTTAACGTTGTTGTCTTTACCTGGTGGTGGTACTGAACTCAAGCGTGTTCGCTTCAGCCG 3291
Query 2997 GAAACAATTTACCGAAGAACAAGCGGAGAAGTGGTGGGGTGAAAATGGAGCTAAAGTGTG 3056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3292 GAAACAATTTACCGAAGAACAAGCGGAGAAGTGGTGGGGTGAAAATGGAGCTAAAGTGTG 3351
Query 3057 TGAGCGCCACAACATTCTAGTTTCTTAGGACTCCT--GTCTTCTCCAATAGAGAATAAAA 3114
||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||
Sbjct 3352 TGAGCGCCACAACATTCTAGTTTCTTAGGACTCCTATGTCTTCTTCAATAGA-A-TAAA- 3408
Query 3115 ATAGAGAAACACATGGATGCAGATTTTATTTGTTTTGGAACATGATGTTTTTCTGCTGTT 3174
|||||| || |||||||||||||| | | || ||||||||||||||||||| ||||
Sbjct 3409 -TAGAGA--CA--TGGATGCAGATTTT-TAT-TT--GGAACATGATGTTTTTCTGTTGTT 3459
Query 3175 CATAGaaaaaaaTGTTTGTTGTAAATTATATATTTAATTC 3214
|||||||||||||||||| |||||||||||||||| ||||
Sbjct 3460 CATAGAAAAAAATGTTTGATGTAAATTATATATTTCATTC 3499
> AT1G42680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:16041656-16042880
FORWARD LENGTH=513
Length=513
Score = 167 bits (90), Expect = 7e-40
Identities = 90/90 (100%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 136 GACGAGTCTGCATTAGTATGGTACTCTGGCAAAGAAGAGAAGCAGATTAAGCTGAGTCAA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGAGTCTGCATTAGTATGGTACTCTGGCAAAGAAGAGAAGCAGATTAAGCTGAGTCAA 120
Query 196 GTCCTGAGAATTGTTCCTGGACAACGCACG 225
||||||||||||||||||||||||||||||
Sbjct 121 GTCCTGAGAATTGTTCCTGGACAACGCACG 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159882047341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5