BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476104
Length=2324
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69730.1 | Symbols: | Wall-associated kinase family protein... 1441 0.0
AT1G65365.1 | Symbols: | pseudogene, putative protein kinase, ... 315 2e-84
> AT1G69730.1 | Symbols: | Wall-associated kinase family protein
| chr1:26228632-26231339 REVERSE LENGTH=2450
Length=2450
Score = 1441 bits (780), Expect = 0.0
Identities = 886/937 (95%), Gaps = 7/937 (1%)
Strand=Plus/Plus
Query 1393 TTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCACAGGAACATCGTGAAACTCTTG 1452
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1462 TTCATCAATGAGGTTGTCATTCTTTCACAGATCAACCACAGGAACATCGTGAAACTCTTG 1521
Query 1453 GGATGTTGCCTCGAGACAAATGTTCCAGTTCTCGTCTACGAATATATTCCTAATGGTAAC 1512
||||||||||| |||||||| || || |||||||||||||| | ||||||||||||||||
Sbjct 1522 GGATGTTGCCTTGAGACAAAAGTCCCTGTTCTCGTCTACGAGTTTATTCCTAATGGTAAC 1581
Query 1513 CTTTTCGAACATCTACATGATGAGTTTGATGATAACATGATGGCTACATGGGAA-ATGCG 1571
|||||||||||||| ||||||||||||||||| ||||| |||||||| | |||| || ||
Sbjct 1582 CTTTTCGAACATCTTCATGATGAGTTTGATGAAAACATTATGGCTAC-TTGGAATATACG 1640
Query 1572 TCTCCGCATTGCTATTGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCAACGTC 1631
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1641 TCTCCGCATTGCTATAGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCATCGTC 1700
Query 1632 TCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGC 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 TCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATATCGAGC 1760
Query 1692 AAAGGTATCTGATTTTGGAACGTCAAGAACGGTAACAGTGGATCATACCCACTTGACAAC 1751
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1761 CAAGGTGTCTGATTTTGGAACGTCAAGAACGGTGACAGTGGATCATACCCACTTGACAAC 1820
Query 1752 GGTAGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTCAGTCTAGCCAATTCAC 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 GGTAGTTTCAGGTACGGTGGGATATATGGATCCAGAGTACTTTCAGTCTAGCCAATTCAC 1880
Query 1812 CGACAAAAGTGATGTCTACAGCTTCGGGGTTGTGCTAGTGGAGCTAATAACTGGAGAAAA 1871
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1881 AGACAAAAGTGATGTCTATAGCTTCGGGGTCGTGCTAGTGGAGCTAATAACTGGAGAAAA 1940
Query 1872 GTCGATTTCTTTTTTGCGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGC 1931
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 GTCGATTTCTTTCTTGAGGTCTCAAGAAAACAGGACATTGGCAACTTATTTCATTCTTGC 2000
Query 1932 AATGAAAGAAAACAAACTCTTCGATATTATCGATCCTCGTATAAGAGATGGTTGCATGTT 1991
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2001 AATGAAAGAAAACAAACTCTTCGATATTATCGATGCTCGAATAAGAGATGGTTGCATGTT 2060
Query 1992 GAGTCAAGTGACTGCAACGGCAAAAGTTGCAAGGAAGTGTCTCAATCTGAAAGGGAGGAA 2051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2061 GAGTCAAGTGACTGCAACGGCAAAAGTTGCAAGGAAGTGTCTCAATCTGAAAGGGAGAAA 2120
Query 2052 ACGACCAAGCATGAGAGAAGTATCCATGGAGCTTGATA-TAATTCGAATGTCTTCTGGAG 2110
||||||||||||||||||||| || ||||||||||||| || |||| ||| ||| |||||
Sbjct 2121 ACGACCAAGCATGAGAGAAGTGTCGATGGAGCTTGATAGTA-TTCGTATGCCTTGTGGAG 2179
Query 2111 ATATGCAAATGCAAGAGTATGTTAGCGAAAACGAGGAAGAGGAAGaaaaaaaCAAAGGAG 2170
|||||||| ||||||| | |||||||||||||||||||| ||||||| |||||||||||
Sbjct 2180 ATATGCAACTGCAAGAATGTGTTAGCGAAAACGAGGAAGGGGAAGAACAAAACAAAGGAC 2239
Query 2171 TTGTGGAAGATATCATAAGGGTAGAATCAAGGAGCAATGAGGTTGTTACTGCTCCAGCTT 2230
|||||||||||||||| |||| ||||||||||||||| ||| ||||||| ||||||||||
Sbjct 2240 TTGTGGAAGATATCATGAGGGCAGAATCAAGGAGCAAAGAGTTTGTTACCGCTCCAGCTT 2299
Query 2231 CTCAATACAATA-TA--GCTGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGT 2287
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300 CTCACTACAATAATATTGCTGCTGCCTCATCTTCTTCGTGGTCAGATGTTGAACCATTGT 2359
Query 2288 TTCCTCTTCAAACACGGTAAAACTTCAGCTTTGAACA 2324
||||||||||||||||||||||||||| ||| |||||
Sbjct 2360 TTCCTCTTCAAACACGGTAAAACTTCATCTTCGAACA 2396
Score = 1179 bits (638), Expect = 0.0
Identities = 1133/1360 (83%), Gaps = 82/1360 (6%)
Strand=Plus/Plus
Query 73 GGAATCGAGATCGTGTACCCCTTTGGAGTCGGAAAGGGTTGTTATCTGGAGAAGTGGTAC 132
|||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 109 GGAATCAAGATCCCGTACCCCTTTGGAATGGGAAAGGGTTGTTATCTGGAGAAGTGGTAC 168
Query 133 GAAGTTACATGTAATAATACCTCTACTTCTGGAAAGCTCGTCCCTTTTCTTTCCGTAATC 192
||| |||| | | |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 169 GAAATTAC-T-T-GTAATACCTCTACTTCTGGAAAGCTCGTCCCTTATCTTTCCGTGATC 225
Query 193 AACAAGGAAGTTGTGAATTTCTCTCCTCCGACT-CA-GCTCGAGGATTATTACG--AGCC 248
||||||||||||||| | |||||| ||||||| | || | || || || | |
Sbjct 226 AACAAGGAAGTTGTGGGTATCTCTCTTCCGACTGAAGGC-AG-GGGTT-CTA-GATATAA 281
Query 249 CTTTCCGCACGGGACAGTTAGCATAAAAAACCCAATAACTTCAATGGGA-TGCTCAAGCG 307
| ||| || | | |||| ||| |||||||||||| | |||| ||| |||||||||
Sbjct 282 CAATCCATACCAGTCCGTTAACATTAAAAACCCAATAGCCTCAA-AGGAGTGCTCAAGCA 340
Query 308 ACGAAGAAGAGCTTGGATCACTTTTGAATTTGACTGATACCCCTTTCTACGTTAG-CAGG 366
| | |||||||||||||||||||||||||||||| | ||||||||| || ||||| |||
Sbjct 341 ATGGAGAAGAGCTTGGATCACTTTTGAATTTGACGGGTACCCCTTTTTATGTTAGCCAGC 400
Query 367 AGAAAT-ACACTGATAG-GAGTTGGTTGCAATAACACGGCATCGTTGACAAATGTCG-AG 423
| ||| | |||| ||| | ||||||||||| |||||||||||| |||||||||| | ||
Sbjct 401 A-CAATGA-ACTGGTAGCG-GTTGGTTGCAACAACACGGCATCGCTGACAAATGT-GAAG 456
Query 424 CCAAGCATAGTGGGATGCAAATCTAGTTGCGGCACACATCCCCTTACGCCTGCT-AGAGA 482
|||||||||||| ||||| ||| || ||| ||||| | |||| ||||| | | | |||
Sbjct 457 CCAAGCATAGTGCAATGCACATCAAGCTGCAGCACAAAACCCCATACGCAT-ATCAAAGA 515
Query 483 TTATCTTGCACTAGTCAGTTGT--G-ATGAGTATGGCTTTGACCAGCGTTGTAAT---GA 536
|||||||||| || | | |||| | || | |||||| || || ||||||| ||
Sbjct 516 TTATCTTGCAGTACTAAATTGTCAGAATTACAATGGCTACGAGAAGAATTGTAATGAGGA 575
Query 537 -A--AG-A-CGA-G---GCATTATGAATGGAACAAGCTGCAATGGTATTAGATGCTGCCA 587
| || | || | |||||||| ||| ||||||||||||||||||| |||||||| |
Sbjct 576 CAGCAGTATGGATGAAAGCATTATGGATGAAACAAGCTGCAATGGTATTGGATGCTGCAA 635
Query 588 GGCAAACAT--G-GTCGACAGTATTGAACAGATTGTTGGTGTCAGAATAGAAAGCACCAT 644
||| |||| | | || |||||| |||||||||||||||||| |||||||| ||||||
Sbjct 636 TGCATACATGCGCGGCGGTAGTATTCAACAGATTGTTGGTGTCACAATAGAAAACACCAT 695
Query 645 AACGAGAGGGTGCAAAGTTGCCTTCTTGACAAACAAGGCATCCTTTTTGTCTAGTAAATC 704
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 696 AACGAGAGGGTGCAAAGTTGCCTTCTTGACAAACAAGGCAGAATATTTGTCTAATAAATC 755
Query 705 TGATCCGCAAGAGCTTCATGCTAGAGGATACAGTACGGTTGAGCTAGGATGGTTTATCCA 764
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 756 TGATCCGCAAAAGCTTCATGCTAGAGGATACAGTACGGTCGAGCTAGGATGGTTTATCCA 815
Query 765 TACTACGAATCATTCATTTGTAAAGTCTCTGGGATGCTATAGTACTGTAATAGAGT---A 821
||| ||||||||||| ||| |||||||||||||||||||||| ||||| ||||| |
Sbjct 816 TACGACGAATCATTCGTTTATAAAGTCTCTGGGATGCTATAG---TGTAAAAGAGTACAA 872
Query 822 C-ATGAATG-T--ATTCGTCACCCCTAGAAGGAA-T-AC--AAGAAGTTGTGTATGCGAC 873
| ||||| | | | | || |||| |||| ||| | || || ||||||| |||||||
Sbjct 873 CAATGAAAGATACACTAGT-ACCCAGAGAA-GAATTAACATAACAAGTTGTATATGCGA- 929
Query 874 AG-TAATACTTATCTAAGCTATGCAAGCTGCTCATGCACTAGAGGTTTCGAAGGCAACCC 932
| ||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 930 TGACAATGCTTATCTAAGCTATGCAAGATGCTCATGCACTAGGGGTTTCCAAGGCAACCC 989
Query 933 ATACCGATTGGGCGGATGCAAAGATATTAATGAATGCCaaaaaaaaGAAGTTGATGGAAC 992
|||||| || ||||||||||||||||| |||||||| ||| ||||| || || |
Sbjct 990 ATACCGTTTAGGCGGATGCAAAGATATCAATGAATG---TAAAGAAGAA---GAGGGCA- 1042
Query 993 TCACACTTACTGTAGTA-GAGGCACTTGCGTCAATTTGCAGGGAGACTATCATTGTGTGT 1051
| ||||||||| | | | || || ||||||||||| ||| ||| | | |||||||
Sbjct 1043 T--GACTTACTGTGGGACCA-ACAAATGTGTCAATTTGCAAGGACACTTTAAATGTGTGT 1099
Query 1052 ACACAAATCACACAAATCATCATCGGCCACTGGCTATAGGGCTTGGTTCGAGTTTCGGCT 1111
| || || | ||||||||||||| ||||||||||||||| | ||||| ||||
Sbjct 1100 ------A-CA-AC--A--ATCATCGGCCACTTGCTATAGGGCTTGGTGCTAGTTTTGGCT 1147
Query 1112 CATTGATCTTTGTTGGTGGAATATACTGGTTATACAAAATTATTAAAAAGCAAAGGAAGT 1171
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1148 CATTGATCTTTGTTGTTGGAATATACTTGTTATACAAATTTATTAAAAAGCAAAGGAAGT 1207
Query 1172 TAAACCAAAAGAAGAAGTTTTTCAAACGTAATGGGGGTCTATTGTTGCAACAACAATTGA 1231
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1208 TAAACCAAAAGAAGAAGTTCTTCAAGCGTAATGGTGGTCTATTGTTGCAACAACAATTGA 1267
Query 1232 CTTCAACAGAAGGAATGGTCGAGAAGACAAAAGTGTTCAGTTCGCGAGAGTTGGAGAAAG 1291
|||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1268 TTTCAACAGTAGGCATGGTCGAAAAGACAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAG 1327
Query 1292 CTACCGAAAACTTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTACTGTGTACA 1351
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1328 CTACTGAAAACTTCAGTTCAAACAGAATACTTGGCCAGGGTGGTCAAGGTACAGTGTACA 1387
Query 1352 AGGGAATGCTTGTCGATGGAAGAATTGTTGCAGTaaaaaa 1391
||||||||||||||||||||||||| ||||||||||||||
Sbjct 1388 AGGGAATGCTTGTCGATGGAAGAATCGTTGCAGTAAAAAA 1427
> AT1G65365.1 | Symbols: | pseudogene, putative protein kinase,
blastp match of 45% identity and 1.7e-40 P-value to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944
Putative protein kinase
{Oryza sativa (japonica cultivar-group)} | chr1:24282516-24284206
REVERSE LENGTH=1691
Length=1691
Score = 315 bits (170), Expect = 2e-84
Identities = 245/280 (88%), Gaps = 9/280 (3%)
Strand=Plus/Plus
Query 1117 ATCTTTGTTGGTGGAATATACTGGTTATACAAAATTATTA-AAAAGCAAAGGAAGTTAAA 1175
||||| |||||||| |||| |||||||| ||| ||| || |||| |||| || | ||||
Sbjct 966 ATCTTCATTGGTGGAGTATATTGGTTATA-AAATTTAGTAGAAAA-CAAATGAGGCTAAA 1023
Query 1176 CCAAAAGAAG-AAGTTTTTCAAACGTAATGGGGGTCTATTGTTGCAACAACAATTGACTT 1234
||||||| || ||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1024 CCAAAAG-AGAAAGTTCTTCAAACGTACTGGGGGTTTATTGTTGCAACAACAATTGACTT 1082
Query 1235 CAACAGAAGG-AATGGTCGAGAAGACAAAAGTGTTCAGTTCGCGAGAGTTGGAGAAAGCT 1293
|||||||||| ||| ||||||||||||| ||||||||| ||| | ||||| ||||||||
Sbjct 1083 CAACAGAAGGCAAT-GTCGAGAAGACAAGAGTGTTCAGCTCGAGTGAGTTAGAGAAAGCC 1141
Query 1294 ACCGAAAACTTCAGTTC-AAACAGAATACTTGGCCAGGGTGGTCAAGGTACTGTGTACAA 1352
|| ||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1142 ACTGAAAACTTCAG-CCTAAATAGAATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAA 1200
Query 1353 GGGAATGCTTGTCGATGGAAGAATTGTTGCAGTaaaaaaa 1392
||||||||||||||||| |||||||| |||||||| |||
Sbjct 1201 GGGAATGCTTGTCGATGCTAGAATTGTAGCAGTAAAGAAA 1240
Score = 278 bits (150), Expect = 2e-73
Identities = 259/310 (84%), Gaps = 14/310 (5%)
Strand=Plus/Plus
Query 1393 TTCATCAATGAGGTTGTCATTCTTTCGCAGATCAACCACAGGAACATCGTGAAACTCTTG 1452
||||||||||||||||| |||||||||||||| ||||| | | | ||||||||| ||||
Sbjct 1274 TTCATCAATGAGGTTGTAATTCTTTCGCAGATTAACCATA-G-A-ATCGTGAAAATCTTA 1330
Query 1453 GGATGTTGCC-T--CGAGACAAATGTTCC-AGTTCTCGTCTACGAATATATTCCTAATGG 1508
|| |||| || | |||||||||| ||| ||||||||||||| | |||||| |||||
Sbjct 1331 GGTTGTTTCCGTAATGAGACAAATG-TCCTTCTTCTCGTCTACGAGTTTATTCCCAATGG 1389
Query 1509 TAACCTTTTCGAACATCTACATGATGAGTTTGATGATAACATGATGGCTACATGGGAAAT 1568
||||||||||| ||||| || ||| || ||||||| || |||| ||| ||||| |
Sbjct 1390 CAACCTTTTCGAGCATCTTCACGATAAG-CTGATGATTTCACGATGATTACTTGGGATGT 1448
Query 1569 GCGTCTCCGCATTGCTA-TTGATATTGCAGGAGCTCTCTCATACTTGCACTCGTCTGCAA 1627
||||||||||| || | | ||||||||| ||||||| |||||||||| |||| ||| ||
Sbjct 1449 ACGTCTCCGCATAGC-AGTGGATATTGCATGAGCTCTTTCATACTTGCTCTCGGCTG-AA 1506
Query 1628 -CGTCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATAATGTTGGATGAGAAATAT 1686
| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1507 TCATCTCCAATCTATCACAGAGACGTCAAGTCTACAAACATCATGTTAGATGAGAAATAT 1566
Query 1687 CGAGC-AAAG 1695
||||| ||||
Sbjct 1567 CGAGCCAAAG 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115360852410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5