BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476107 Length=825 Score E Sequences producing significant alignments: (Bits) Value AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated ge... 1251 0.0 AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e fam... 839 0.0 AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein... 713 0.0 > AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated gene 24 | chr1:24839165-24840612 FORWARD LENGTH=882 Length=882 Score = 1251 bits (677), Expect = 0.0 Identities = 778/827 (94%), Gaps = 6/827 (1%) Strand=Plus/Plus Query 1 AATTTCTAGGGTTTTGCAAAACCAACATCAAACGAATCCAACACGATGGGACGAAGACCA 60 ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||| Sbjct 1 AATTTCTAGGGTTTTGCAAAACCAACACCGAA-G-ATCCAACACGATGGGACGAAGACCT 58 Query 61 GCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGA 120 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 GCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGT 118 Query 121 GTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAGGAAAGGAGTTGATGAG 180 || |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 119 GTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAAGGTGTTGATGAG 178 Query 181 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTTTCAAGTGAAGCTCTT 240 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 179 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTGTCAAGTGAAGCACTT 238 Query 241 GAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGCTGGTAAAGATGCGTTC 300 ||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| || Sbjct 239 GAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCTGGGAAAGATGCTTTT 298 Query 301 CATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCAACAAGATGCTTTCGTG 359 ||| | |||||||||||||||| ||||||||| | | | || ||||||||||||||||| Sbjct 299 CATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTAACAAGATGCTTTCGTG 357 Query 360 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 417 Query 420 TTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 479 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 477 Query 480 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 537 Query 540 CATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCTGAGTACACGAAGTTAAG 599 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || Sbjct 538 CATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGAGTACACGAAGCTGAG 597 Query 600 AGCGATGAAGAGGATTGTTCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGGCC 659 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 598 AGCGATGAAGAGGATTGTGCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGTCC 657 Query 660 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACGAGCGAATAGGAATGAAG 719 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 658 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACTAGCGAATAAGAATGAAG 717 Query 720 AAGATGTTGGTGATTTGTGGTTGTAGAACCGATAATCTAGTTTCT-CAAGTTTTATGTTT 778 |||||| || |||||||||||||||||||||||||| |||||||| | |||| ||||| Sbjct 718 AAGATGATGATGATTTGTGGTTGTAGAACCGATAATGTAGTTTCTGCTC-TTTTCTGTTT 776 Query 779 CACTTTTATTGTAACAGTTGAAGACAAGGATCCCCGTATGATTCCAA 825 || ||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 777 CAATTTTATTGTAACAGTTGTAGACAAGGATCCTCGTATGATTCCAA 823 > AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321650-9322965 FORWARD LENGTH=877 Length=877 Score = 839 bits (454), Expect = 0.0 Identities = 602/673 (89%), Gaps = 12/673 (2%) Strand=Plus/Plus Query 31 AACGAATCCAACACGATGGGACGAAGACCAGCGAGGTGTTACCGTCAGATTAAGGGAAAG 90 ||| ||| |||| |||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 47 AAC-AAT-CAACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAG 104 Query 91 CCATACCCGAAATCACGATACTGTCGTGGAGTTCCAGATCCAAAAATCAGGATTTACGAT 150 |||||||| |||||| ||||||||||||| ||||| ||||| || ||||||||||||||| Sbjct 105 CCATACCCTAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGAT 164 Query 151 GTCGGTATGAAGAGGAAAGGAGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATG 209 || ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 165 GTTGGTATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTGGTTTCATG 223 Query 210 GGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCACGTATTGCTTGTAACAAGTA 269 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 224 GGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTA 283 Query 270 CATGGTTAAATCTGCTGGTAAAGATGCGTTCCATCTCCGGATTAGGGTTCATCCGTTCCA 329 |||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| ||||| Sbjct 284 CATGGTGAAGTCTGCCGGGAAAGATGCGTTTCATCTCCGTATTAGAGTTCATCCTTTCCA 343 Query 330 TGTT-TT-GCGAATCAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGA 387 |||| || | || |||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct 344 TGTTCTTAG-GA-TCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGT 401 Query 388 ATGAGAGGTGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATCGGACAGGTT 447 ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| Sbjct 402 ATGAGAGGTGCTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTT 461 Query 448 CTTTTGTCTGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGA 507 ||||||||||| ||||| || ||| |||||| |||||||||||| ||||||||| | Sbjct 462 CTTTTGTCTGTGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGT 521 Query 508 GCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACC 567 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 522 GCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACC 581 Query 568 AAATTCAACCGTGCTGAGTACACGAAGTTAAGAGC--GATGAAGAGGATTGTTCCTGATG 625 || || ||||||||||| ||||| ||| |||| || || |||||||||||| ||||||| Sbjct 582 AAGTTTAACCGTGCTGATTACACAAAGCTAAG-GCAAGA-GAAGAGGATTGTCCCTGATG 639 Query 626 GTGTCAATGCTAAGTTTCTATCAAACCATGGGCCATTGGCTAACCGTCAACCTGGAAGTG 685 |||| ||||| ||||| ||||| |||||| || |||||||||||||| || ||||||| Sbjct 640 GTGTAAATGCCAAGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTG 699 Query 686 CCTTCATATCAGC 698 | ||| | ||||| Sbjct 700 CGTTCTTGTCAGC 712 > AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein L16p/L10e family protein | chr1:4888214-4889661 FORWARD LENGTH=972 Length=972 Score = 713 bits (386), Expect = 0.0 Identities = 564/650 (87%), Gaps = 12/650 (2%) Strand=Plus/Plus Query 46 ATGGGACGAAGACCAGCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAA-TC 104 |||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||| || Sbjct 57 ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCC-AAAGTC 115 Query 105 ACGATACTGTCGTGGAGTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAG 164 || ||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| Sbjct 116 TCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGAAGAG 175 Query 165 GAAAGGAGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGT 224 ||| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 176 GAAGGGTGTTGATGAGTTTCCATTCTGTGTCCATTTGGTGTCATGGGAGAAGGAGAATGT 235 Query 225 TTCAAGTGAAGCTCTTGAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGC 284 ||||||||||| ||||||||||| ||||||||||| |||||||||||||| || ||||| Sbjct 236 GTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAGTCTGC 295 Query 285 TGGTAAAGATGCGTTCCATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCA 343 ||| |||||||| || ||| | |||||||||||||||| ||||||||| | | | || | Sbjct 296 TGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTA 354 Query 344 ACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTG 403 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 355 ACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTG 414 Query 404 GTAAAGCTCTTGG-TACTTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGG 462 |||||||| |||| |||||||||| | ||||| || ||||||||||||||||||||| | Sbjct 415 GTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGT 473 Query 463 TGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTC 522 || |||||| ||||| |||||||| || ||||||||| | |||||||| |||||| Sbjct 474 TGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTC 533 Query 523 CCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCT 582 ||||||||||||||||| ||||| |||||||||||||| ||||| || || ||| | ||| Sbjct 534 CCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAGAGCT 593 Query 583 GAGTACACGAAGTTAAGAGC--GATGAAGAG-GATTGTTCCTGATGGTGTCAATGCTAAG 639 || | ||| ||||| || || || |||| | | |||| |||||||||||||| |||||| Sbjct 594 GACTTCACCAAGTTGAG-GCAAGA-GAAGCGTG-TTGTCCCTGATGGTGTCAACGCTAAG 650 Query 640 TTTCTATCAAACCATGGGCCATTGGCTAACCGTCAACCTGGAAGTGCCTT 689 || || ||| |||||| || |||||||||||||| || ||||||||||| Sbjct 651 TTCCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTT 700 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40187317600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5