BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476107
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated ge... 1251 0.0
AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e fam... 839 0.0
AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein... 713 0.0
> AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated
gene 24 | chr1:24839165-24840612 FORWARD LENGTH=882
Length=882
Score = 1251 bits (677), Expect = 0.0
Identities = 778/827 (94%), Gaps = 6/827 (1%)
Strand=Plus/Plus
Query 1 AATTTCTAGGGTTTTGCAAAACCAACATCAAACGAATCCAACACGATGGGACGAAGACCA 60
||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 1 AATTTCTAGGGTTTTGCAAAACCAACACCGAA-G-ATCCAACACGATGGGACGAAGACCT 58
Query 61 GCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGA 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGT 118
Query 121 GTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAGGAAAGGAGTTGATGAG 180
|| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 119 GTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAAGGTGTTGATGAG 178
Query 181 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTTTCAAGTGAAGCTCTT 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 179 TTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTGTCAAGTGAAGCACTT 238
Query 241 GAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGCTGGTAAAGATGCGTTC 300
||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct 239 GAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCTGGGAAAGATGCTTTT 298
Query 301 CATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCAACAAGATGCTTTCGTG 359
||| | |||||||||||||||| ||||||||| | | | || |||||||||||||||||
Sbjct 299 CATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTAACAAGATGCTTTCGTG 357
Query 360 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTAC 417
Query 420 TTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGG 477
Query 480 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGAT 537
Query 540 CATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCTGAGTACACGAAGTTAAG 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 538 CATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGAGTACACGAAGCTGAG 597
Query 600 AGCGATGAAGAGGATTGTTCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGGCC 659
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 AGCGATGAAGAGGATTGTGCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGTCC 657
Query 660 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACGAGCGAATAGGAATGAAG 719
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 658 ATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACTAGCGAATAAGAATGAAG 717
Query 720 AAGATGTTGGTGATTTGTGGTTGTAGAACCGATAATCTAGTTTCT-CAAGTTTTATGTTT 778
|||||| || |||||||||||||||||||||||||| |||||||| | |||| |||||
Sbjct 718 AAGATGATGATGATTTGTGGTTGTAGAACCGATAATGTAGTTTCTGCTC-TTTTCTGTTT 776
Query 779 CACTTTTATTGTAACAGTTGAAGACAAGGATCCCCGTATGATTCCAA 825
|| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 777 CAATTTTATTGTAACAGTTGTAGACAAGGATCCTCGTATGATTCCAA 823
> AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e family
protein | chr1:9321650-9322965 FORWARD LENGTH=877
Length=877
Score = 839 bits (454), Expect = 0.0
Identities = 602/673 (89%), Gaps = 12/673 (2%)
Strand=Plus/Plus
Query 31 AACGAATCCAACACGATGGGACGAAGACCAGCGAGGTGTTACCGTCAGATTAAGGGAAAG 90
||| ||| |||| |||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 47 AAC-AAT-CAACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAG 104
Query 91 CCATACCCGAAATCACGATACTGTCGTGGAGTTCCAGATCCAAAAATCAGGATTTACGAT 150
|||||||| |||||| ||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 105 CCATACCCTAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGAT 164
Query 151 GTCGGTATGAAGAGGAAAGGAGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATG 209
|| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 165 GTTGGTATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTGGTTTCATG 223
Query 210 GGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCACGTATTGCTTGTAACAAGTA 269
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 224 GGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTA 283
Query 270 CATGGTTAAATCTGCTGGTAAAGATGCGTTCCATCTCCGGATTAGGGTTCATCCGTTCCA 329
|||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 284 CATGGTGAAGTCTGCCGGGAAAGATGCGTTTCATCTCCGTATTAGAGTTCATCCTTTCCA 343
Query 330 TGTT-TT-GCGAATCAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGA 387
|||| || | || |||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 344 TGTTCTTAG-GA-TCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGT 401
Query 388 ATGAGAGGTGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATCGGACAGGTT 447
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 402 ATGAGAGGTGCTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTT 461
Query 448 CTTTTGTCTGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGA 507
||||||||||| ||||| || ||| |||||| |||||||||||| ||||||||| |
Sbjct 462 CTTTTGTCTGTGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGT 521
Query 508 GCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACC 567
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 522 GCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACC 581
Query 568 AAATTCAACCGTGCTGAGTACACGAAGTTAAGAGC--GATGAAGAGGATTGTTCCTGATG 625
|| || ||||||||||| ||||| ||| |||| || || |||||||||||| |||||||
Sbjct 582 AAGTTTAACCGTGCTGATTACACAAAGCTAAG-GCAAGA-GAAGAGGATTGTCCCTGATG 639
Query 626 GTGTCAATGCTAAGTTTCTATCAAACCATGGGCCATTGGCTAACCGTCAACCTGGAAGTG 685
|||| ||||| ||||| ||||| |||||| || |||||||||||||| || |||||||
Sbjct 640 GTGTAAATGCCAAGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTG 699
Query 686 CCTTCATATCAGC 698
| ||| | |||||
Sbjct 700 CGTTCTTGTCAGC 712
> AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein
L16p/L10e family protein | chr1:4888214-4889661 FORWARD LENGTH=972
Length=972
Score = 713 bits (386), Expect = 0.0
Identities = 564/650 (87%), Gaps = 12/650 (2%)
Strand=Plus/Plus
Query 46 ATGGGACGAAGACCAGCGAGGTGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAA-TC 104
|||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||| ||
Sbjct 57 ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCC-AAAGTC 115
Query 105 ACGATACTGTCGTGGAGTTCCAGATCCAAAAATCAGGATTTACGATGTCGGTATGAAGAG 164
|| ||||||||||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 116 TCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGAAGAG 175
Query 165 GAAAGGAGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGT 224
||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 176 GAAGGGTGTTGATGAGTTTCCATTCTGTGTCCATTTGGTGTCATGGGAGAAGGAGAATGT 235
Query 225 TTCAAGTGAAGCTCTTGAAGCTGCACGTATTGCTTGTAACAAGTACATGGTTAAATCTGC 284
||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 236 GTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAGTCTGC 295
Query 285 TGGTAAAGATGCGTTCCATCTCCGGATTAGGGTTCATCCGTTCCATGTTTTGC-GAATCA 343
||| |||||||| || ||| | |||||||||||||||| ||||||||| | | | || |
Sbjct 296 TGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT-CAGGATTA 354
Query 344 ACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTG 403
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 ACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTG 414
Query 404 GTAAAGCTCTTGG-TACTTGTGCTAGAGTTGCGATCGGACAGGTTCTTTTGTCTGTTAGG 462
|||||||| |||| |||||||||| | ||||| || ||||||||||||||||||||| |
Sbjct 415 GTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGT 473
Query 463 TGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTC 522
|| |||||| ||||| |||||||| || ||||||||| | |||||||| ||||||
Sbjct 474 TGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTC 533
Query 523 CCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAATTCAACCGTGCT 582
||||||||||||||||| ||||| |||||||||||||| ||||| || || ||| | |||
Sbjct 534 CCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAGAGCT 593
Query 583 GAGTACACGAAGTTAAGAGC--GATGAAGAG-GATTGTTCCTGATGGTGTCAATGCTAAG 639
|| | ||| ||||| || || || |||| | | |||| |||||||||||||| ||||||
Sbjct 594 GACTTCACCAAGTTGAG-GCAAGA-GAAGCGTG-TTGTCCCTGATGGTGTCAACGCTAAG 650
Query 640 TTTCTATCAAACCATGGGCCATTGGCTAACCGTCAACCTGGAAGTGCCTT 689
|| || ||| |||||| || |||||||||||||| || |||||||||||
Sbjct 651 TTCCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5