BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476108
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein... 1916 0.0
AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr... 364 9e-100
AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr... 187 2e-46
> AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein
family | chr1:26258939-26260751 FORWARD LENGTH=1398
Length=1398
Score = 1916 bits (1037), Expect = 0.0
Identities = 1113/1149 (97%), Gaps = 8/1149 (1%)
Strand=Plus/Plus
Query 1 ACCAGAAGTGGTATAGTCTAGGCCGATACATTTCACTATCTCTCTCTCTGTTGTTTTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ACCAGAAGTGGTATAGTCTAGGCCGATACATTTCACTATCTCTCTCTCTTTTGTTTTTCC 60
Query 61 TCTTCtt-tttttttCCATTTGATTTCAAAGACTCTCACACAAAGAGCTTCAGATTTATA 119
||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 TCTTCTTCTTTTTTTCCATTTGATTTC-AA-ACTCTCACACAAAGAGCTTCAGATTTATA 118
Query 120 AGAGCGTGATAATGGCTTTAAGACAAAGATTGGTAAGAAGAAAAAACTAGAGAGAAACGA 179
||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 119 AGACCATGATAATGGCTTTAAGACAAAGATTGGCAAGAAGAAAAAACTAAAGAGAAACGA 178
Query 180 CCAAAATCTCAAGCAAACAGTACTATCTTCTGTTGCAAAACAGAAGAAGATGTCTTGTAA 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 CCAAAATCTCAAGCAAACAGTACTAACTTCTGTTGCAAAACAGAAGAAGATGTCTTGTAA 238
Query 240 TAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAAACTCTTACGAAGACGATCA 299
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 239 TAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAACCTCTTACGAAGATGATCA 298
Query 300 GCCTCATCAATCTCCTTCTCTTGCTCCTCTTCTTCCTTCTTGTTCTCTACCTCAAGATCT 359
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 TCCTCATCAATCTCCATCTCTTGCTCCTCTTCTTCCTTCTTGCTCTCTACCTCAAGATCT 358
Query 360 CCATGGGTTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGTTGTTGCGATTTAGA 419
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 359 CCATGGATTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGGTGTTGTGATTTAGA 418
Query 420 AACAGTGAACAACATGAATGGTGAAGAAGATTATTCAGATGATGGGTCTCAAATGGGAGA 479
||||| |||||| |||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 419 AACAGGGAACAATATGAATGGAGAAGAGGATTATTCAGATGATGGGTCACAAATGGGAGA 478
Query 480 GAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACATTAGAGAAGAACTTTGAGCTTGG 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 GAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGCTTGG 538
Query 540 AAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAG 598
Query 600 ACAGATCGCGATTTGGTTCCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTTGAGAA 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 ACAGATCGCGATTTGGTTTCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTAGAGAA 658
Query 660 AGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCA 718
Query 720 AACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGA 778
Query 780 ATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGTAGTAACAGAAGTGATAACAGTTC 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 ATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGCAGTAACAGAAGTGATAACAGTTC 838
Query 840 AGATAATCTCAGACTCGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGG 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATAATCTCAGACTAGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGG 898
Query 900 TGGCCAACCACCGCCACCGCAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCAC 959
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGCCACCCACCGCCACCACAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCAC 958
Query 960 CGCAACGACAAC-A--ACGACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTAT 1016
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGCAACGACAACTACTACAACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTAT 1018
Query 1017 GGTTAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTT 1076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGTTAAAGAAGAGAATAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTT 1078
Query 1077 TTGGCCATGGCTTGATCAGCAACAGTACAATTGAAATTGGTCTACCTGtttttttt-ttt 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 TTGGCCATGGCTTGATCAGCAACAGTACAATTGAAATTGGTCTACCTGTTTTTTTTGTTT 1138
Query 1136 ttGTATTTT 1144
|||| ||||
Sbjct 1139 TTGT-TTTT 1146
Score = 318 bits (172), Expect = 7e-86
Identities = 192/201 (96%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 1126 ttttttttttttGTATTTTGAATTTTGATCAGAAGAACCCATGCATGTTTTCAAAAACTG 1185
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TTTTTTTTTTTTGTATTTGGAATTTTGATCAGAAGAACCCATGCATGTTTTCAAAAACTG 1219
Query 1186 GAATCTAT--CATTAGCTCACTTTGAAATCTGCAACCAAACACCACCGAG-TTTTTTGTT 1242
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1220 GAATCTATATCATTAGCTCACTTTGAAATCTGCAACCAAACACCACTGAGGTTTTTTGTT 1279
Query 1243 TACTTTTTGAGTAAATGATATGTaaaaaaaTGGGTAATCTCAATCATATTATATAAAAAA 1302
|||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct 1280 TACTTTTTGAGTAAATGAGATGTAAAAAAATGGGTAATATCCATTATATTATATAAAAAA 1339
Query 1303 TAATATCATTATGGCCCAACA 1323
|||||||||||||||||||||
Sbjct 1340 TAATATCATTATGGCCCAACA 1360
> AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr1:9355920-9357460
FORWARD LENGTH=1195
Length=1195
Score = 364 bits (197), Expect = 9e-100
Identities = 343/413 (83%), Gaps = 12/413 (3%)
Strand=Plus/Plus
Query 433 ATGAATGGTGAAGAAGATTATTCAGATGATGGGTCTCAA-ATGGGAGAGAAGAAGAGGAG 491
||||| || || ||||| |||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 369 ATGAACGGAGATGAAGAATATTCAGACGATGGATCT-AAGATGGGAGAGAAGAAGAGGAG 427
Query 492 ATTGAACATGGAACAAGTGAAGACATTAGAGAAGAACTTTGAGCTTGGAAACAAACTTGA 551
|||||||||||||||| ||||| || |||||||| ||||||||||||| || ||||||||
Sbjct 428 ATTGAACATGGAACAATTGAAGGCACTAGAGAAGGACTTTGAGCTTGGTAATAAACTTGA 487
Query 552 ACCAGAGAGGAAAAT--GCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAGACAGATCGCG 609
| |||| | ||||| | |||||||||||||||| || |||||||| ||||| || ||
Sbjct 488 ATCAGATCG-AAAATTAG-AGCTAGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCT 545
Query 610 ATTTGGTTCCAAAATC-GAAGAGCTCGTTGGAAAACAAAGCAGCTTGAGAAAGATTATGA 668
|| ||||||||||| | |||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 546 ATATGGTTCCAAAA-CAGAAGAGCTCGATCCAAAACCAAGCAGCTTGAGAAAGACTATGA 604
Query 669 TACT-CTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCAAACTCATA 727
| | ||||| || || || || | || | || ||| || || ||||||||||||| |
Sbjct 605 CA-TGCTTAAGCGTCAATTCGAAAGTCTCAGAGATGAGAACGAAGTTCTTCAAACTCAAA 663
Query 728 ATCAGAAA-CTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGAATCAATA 786
|||| ||| || |||||| || |||||| ||| |||| |||||||| || |||||||||
Sbjct 664 ATCA-AAAGCTTCAAGCTCAGGTAATGGCATTGAAAAGCAGAGAACCAATAGAATCAATC 722
Query 787 AATCTAAACAAAGAAACTGAAGGATCTTGTAGTAACAGAAGTGATAACAGTTC 839
||||| ||||||||||| |||||||| |||||| |||||||||| |||| |||
Sbjct 723 AATCTGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTC 775
Score = 185 bits (100), Expect = 8e-46
Identities = 154/180 (86%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 955 GCCACCGCAACGACAACAACGACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGT 1014
|||| | || ||||||| || || |||||||| ||||| || ||||| |||| ||||||
Sbjct 820 GCCATC-CACCGACAACTACAACGATGCAGTTTTTTCAGAATTCATCGTCAGAACAGAGA 878
Query 1015 ATGGTTAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGT 1074
||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 879 ATGGTGAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGGAATTGATGACCAGTCTGGG 938
Query 1075 TTTTGGCCATGGCTTGATCAGCAACAGTACAATTGAAAT-TGGTCTACCTGttttttttt 1133
|| |||||||||||||| |||||||| |||||||||| | ||||| | ||||| || |||
Sbjct 939 TTCTGGCCATGGCTTGACCAGCAACAATACAATTGAA-TGTGGTCGATCTGTTCTTGTTT 997
> AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3:73481-75538
FORWARD LENGTH=1222
Length=1222
Score = 187 bits (101), Expect = 2e-46
Identities = 242/308 (79%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 473 TGGGAGAGAAGAAGAGGAGATTG-AACATGGAACAAGTGAAGACATTAGAGAAGAACTTT 531
||||||||||||||| ||| || || | || ||||| ||| |||||||||||| ||||
Sbjct 369 TGGGAGAGAAGAAGAAGAGGCTGCAA-TTAGAGCAAGTTAAGGCATTAGAGAAGAGCTTT 427
Query 532 GAGCTTGGAAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTG 591
|||||||| ||||| || || ||||||||||| || || |||||| || ||||| ||
Sbjct 428 GAGCTTGGTAACAAGCTGGAGCCAGAGAGGAAGATACAACTAGCTAAAGCATTAGGGATG 487
Query 592 CAACCAAGACAGATCGCGATTTGGTTCCAAAATC-GAAGAGCTCGTTGGAAAACAA-AGC 649
|||||||||||||||||||||||||| ||||| | | |||||| | ||||| || | | |
Sbjct 488 CAACCAAGACAGATCGCGATTTGGTTTCAAAA-CAGGAGAGCTAGGTGGAAGACTAGA-C 545
Query 650 AGCTTGAGAAAGATTATGATACTCTTAA-ACGACAGTTTGA-TACACTTAAAGCTGAAAA 707
|||| |||| |||||||||| | || || | ||||||||| | | |||||| | || ||
Sbjct 546 AGCTCGAGAGAGATTATGATTCACTCAAGAA-ACAGTTTGAGT-CTCTTAAATCCGACAA 603
Query 708 TGATCTTCT-T-CAAAC-TCATAATCA-GAAACTCCAAGCTGAGATAATGGGATTAAAAA 763
|| ||||| | | | | |||| || |||||||| |||||| |||||| ||||| |
Sbjct 604 TG--CTTCTCTACTTGCCT-ATAA-CAAGAAACTCCTTGCTGAGGTAATGGCTTTAAAGA 659
Query 764 ACAGAGAA 771
||| ||||
Sbjct 660 ACAAAGAA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5