BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476108 Length=1323 Score E Sequences producing significant alignments: (Bits) Value AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein... 1916 0.0 AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr... 364 9e-100 AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr... 187 2e-46 > AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26258939-26260751 FORWARD LENGTH=1398 Length=1398 Score = 1916 bits (1037), Expect = 0.0 Identities = 1113/1149 (97%), Gaps = 8/1149 (1%) Strand=Plus/Plus Query 1 ACCAGAAGTGGTATAGTCTAGGCCGATACATTTCACTATCTCTCTCTCTGTTGTTTTTCC 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ACCAGAAGTGGTATAGTCTAGGCCGATACATTTCACTATCTCTCTCTCTTTTGTTTTTCC 60 Query 61 TCTTCtt-tttttttCCATTTGATTTCAAAGACTCTCACACAAAGAGCTTCAGATTTATA 119 ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 61 TCTTCTTCTTTTTTTCCATTTGATTTC-AA-ACTCTCACACAAAGAGCTTCAGATTTATA 118 Query 120 AGAGCGTGATAATGGCTTTAAGACAAAGATTGGTAAGAAGAAAAAACTAGAGAGAAACGA 179 ||| | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 119 AGACCATGATAATGGCTTTAAGACAAAGATTGGCAAGAAGAAAAAACTAAAGAGAAACGA 178 Query 180 CCAAAATCTCAAGCAAACAGTACTATCTTCTGTTGCAAAACAGAAGAAGATGTCTTGTAA 239 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 179 CCAAAATCTCAAGCAAACAGTACTAACTTCTGTTGCAAAACAGAAGAAGATGTCTTGTAA 238 Query 240 TAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAAACTCTTACGAAGACGATCA 299 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 239 TAATGGAATGTCTTTTTTCCCTTCAAATTTCATGATCCAAACCTCTTACGAAGATGATCA 298 Query 300 GCCTCATCAATCTCCTTCTCTTGCTCCTCTTCTTCCTTCTTGTTCTCTACCTCAAGATCT 359 |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 299 TCCTCATCAATCTCCATCTCTTGCTCCTCTTCTTCCTTCTTGCTCTCTACCTCAAGATCT 358 Query 360 CCATGGGTTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGTTGTTGCGATTTAGA 419 |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 359 CCATGGATTTGCTTCGTTTCTAGGTAAGAGATCTCCAATGGAAGGGTGTTGTGATTTAGA 418 Query 420 AACAGTGAACAACATGAATGGTGAAGAAGATTATTCAGATGATGGGTCTCAAATGGGAGA 479 ||||| |||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 419 AACAGGGAACAATATGAATGGAGAAGAGGATTATTCAGATGATGGGTCACAAATGGGAGA 478 Query 480 GAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACATTAGAGAAGAACTTTGAGCTTGG 539 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 479 GAAGAAGAGGAGATTGAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGCTTGG 538 Query 540 AAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAG 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAG 598 Query 600 ACAGATCGCGATTTGGTTCCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTTGAGAA 659 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 599 ACAGATCGCGATTTGGTTTCAAAATCGAAGAGCTCGTTGGAAAACAAAGCAGCTAGAGAA 658 Query 660 AGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 AGATTATGATACTCTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCA 718 Query 720 AACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AACTCATAATCAGAAACTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGA 778 Query 780 ATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGTAGTAACAGAAGTGATAACAGTTC 839 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 779 ATCAATAAATCTAAACAAAGAAACTGAAGGATCTTGCAGTAACAGAAGTGATAACAGTTC 838 Query 840 AGATAATCTCAGACTCGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGG 899 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AGATAATCTCAGACTAGATATCTCAACTGCGCCGCCATCAAACGACAGTACATTAACCGG 898 Query 900 TGGCCAACCACCGCCACCGCAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCAC 959 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TGGCCACCCACCGCCACCACAGACAGTTGGTCGACACTTCTTCCCACCGTCGCCAGCCAC 958 Query 960 CGCAACGACAAC-A--ACGACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTAT 1016 |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CGCAACGACAACTACTACAACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGTAT 1018 Query 1017 GGTTAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTT 1076 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 GGTTAAAGAAGAGAATAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGTTT 1078 Query 1077 TTGGCCATGGCTTGATCAGCAACAGTACAATTGAAATTGGTCTACCTGtttttttt-ttt 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1079 TTGGCCATGGCTTGATCAGCAACAGTACAATTGAAATTGGTCTACCTGTTTTTTTTGTTT 1138 Query 1136 ttGTATTTT 1144 |||| |||| Sbjct 1139 TTGT-TTTT 1146 Score = 318 bits (172), Expect = 7e-86 Identities = 192/201 (96%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 1126 ttttttttttttGTATTTTGAATTTTGATCAGAAGAACCCATGCATGTTTTCAAAAACTG 1185 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 TTTTTTTTTTTTGTATTTGGAATTTTGATCAGAAGAACCCATGCATGTTTTCAAAAACTG 1219 Query 1186 GAATCTAT--CATTAGCTCACTTTGAAATCTGCAACCAAACACCACCGAG-TTTTTTGTT 1242 |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1220 GAATCTATATCATTAGCTCACTTTGAAATCTGCAACCAAACACCACTGAGGTTTTTTGTT 1279 Query 1243 TACTTTTTGAGTAAATGATATGTaaaaaaaTGGGTAATCTCAATCATATTATATAAAAAA 1302 |||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||| Sbjct 1280 TACTTTTTGAGTAAATGAGATGTAAAAAAATGGGTAATATCCATTATATTATATAAAAAA 1339 Query 1303 TAATATCATTATGGCCCAACA 1323 ||||||||||||||||||||| Sbjct 1340 TAATATCATTATGGCCCAACA 1360 > AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr1:9355920-9357460 FORWARD LENGTH=1195 Length=1195 Score = 364 bits (197), Expect = 9e-100 Identities = 343/413 (83%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 433 ATGAATGGTGAAGAAGATTATTCAGATGATGGGTCTCAA-ATGGGAGAGAAGAAGAGGAG 491 ||||| || || ||||| |||||||| ||||| ||| || |||||||||||||||||||| Sbjct 369 ATGAACGGAGATGAAGAATATTCAGACGATGGATCT-AAGATGGGAGAGAAGAAGAGGAG 427 Query 492 ATTGAACATGGAACAAGTGAAGACATTAGAGAAGAACTTTGAGCTTGGAAACAAACTTGA 551 |||||||||||||||| ||||| || |||||||| ||||||||||||| || |||||||| Sbjct 428 ATTGAACATGGAACAATTGAAGGCACTAGAGAAGGACTTTGAGCTTGGTAATAAACTTGA 487 Query 552 ACCAGAGAGGAAAAT--GCAGCTAGCTCGTGCCTTAGGTTTGCAACCAAGACAGATCGCG 609 | |||| | ||||| | |||||||||||||||| || |||||||| ||||| || || Sbjct 488 ATCAGATCG-AAAATTAG-AGCTAGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCT 545 Query 610 ATTTGGTTCCAAAATC-GAAGAGCTCGTTGGAAAACAAAGCAGCTTGAGAAAGATTATGA 668 || ||||||||||| | |||||||||| | ||||| ||||||||||||||||| ||||| Sbjct 546 ATATGGTTCCAAAA-CAGAAGAGCTCGATCCAAAACCAAGCAGCTTGAGAAAGACTATGA 604 Query 669 TACT-CTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCAAACTCATA 727 | | ||||| || || || || | || | || ||| || || ||||||||||||| | Sbjct 605 CA-TGCTTAAGCGTCAATTCGAAAGTCTCAGAGATGAGAACGAAGTTCTTCAAACTCAAA 663 Query 728 ATCAGAAA-CTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGAATCAATA 786 |||| ||| || |||||| || |||||| ||| |||| |||||||| || ||||||||| Sbjct 664 ATCA-AAAGCTTCAAGCTCAGGTAATGGCATTGAAAAGCAGAGAACCAATAGAATCAATC 722 Query 787 AATCTAAACAAAGAAACTGAAGGATCTTGTAGTAACAGAAGTGATAACAGTTC 839 ||||| ||||||||||| |||||||| |||||| |||||||||| |||| ||| Sbjct 723 AATCTGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTC 775 Score = 185 bits (100), Expect = 8e-46 Identities = 154/180 (86%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 955 GCCACCGCAACGACAACAACGACAATGCAGTTCTTTCAAAACTCATCTTCAGGACAGAGT 1014 |||| | || ||||||| || || |||||||| ||||| || ||||| |||| |||||| Sbjct 820 GCCATC-CACCGACAACTACAACGATGCAGTTTTTTCAGAATTCATCGTCAGAACAGAGA 878 Query 1015 ATGGTTAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGCAATGGATGACCATTCTGGT 1074 ||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 879 ATGGTGAAAGAAGAGAACAGTATCAGTAACATGTTCTGTGGAATTGATGACCAGTCTGGG 938 Query 1075 TTTTGGCCATGGCTTGATCAGCAACAGTACAATTGAAAT-TGGTCTACCTGttttttttt 1133 || |||||||||||||| |||||||| |||||||||| | ||||| | ||||| || ||| Sbjct 939 TTCTGGCCATGGCTTGACCAGCAACAATACAATTGAA-TGTGGTCGATCTGTTCTTGTTT 997 > AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3:73481-75538 FORWARD LENGTH=1222 Length=1222 Score = 187 bits (101), Expect = 2e-46 Identities = 242/308 (79%), Gaps = 18/308 (6%) Strand=Plus/Plus Query 473 TGGGAGAGAAGAAGAGGAGATTG-AACATGGAACAAGTGAAGACATTAGAGAAGAACTTT 531 ||||||||||||||| ||| || || | || ||||| ||| |||||||||||| |||| Sbjct 369 TGGGAGAGAAGAAGAAGAGGCTGCAA-TTAGAGCAAGTTAAGGCATTAGAGAAGAGCTTT 427 Query 532 GAGCTTGGAAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTG 591 |||||||| ||||| || || ||||||||||| || || |||||| || ||||| || Sbjct 428 GAGCTTGGTAACAAGCTGGAGCCAGAGAGGAAGATACAACTAGCTAAAGCATTAGGGATG 487 Query 592 CAACCAAGACAGATCGCGATTTGGTTCCAAAATC-GAAGAGCTCGTTGGAAAACAA-AGC 649 |||||||||||||||||||||||||| ||||| | | |||||| | ||||| || | | | Sbjct 488 CAACCAAGACAGATCGCGATTTGGTTTCAAAA-CAGGAGAGCTAGGTGGAAGACTAGA-C 545 Query 650 AGCTTGAGAAAGATTATGATACTCTTAA-ACGACAGTTTGA-TACACTTAAAGCTGAAAA 707 |||| |||| |||||||||| | || || | ||||||||| | | |||||| | || || Sbjct 546 AGCTCGAGAGAGATTATGATTCACTCAAGAA-ACAGTTTGAGT-CTCTTAAATCCGACAA 603 Query 708 TGATCTTCT-T-CAAAC-TCATAATCA-GAAACTCCAAGCTGAGATAATGGGATTAAAAA 763 || ||||| | | | | |||| || |||||||| |||||| |||||| ||||| | Sbjct 604 TG--CTTCTCTACTTGCCT-ATAA-CAAGAAACTCCTTGCTGAGGTAATGGCTTTAAAGA 659 Query 764 ACAGAGAA 771 ||| |||| Sbjct 660 ACAAAGAA 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65110106865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5