BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476109
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69790.1 | Symbols: | Protein kinase superfamily protein | ... 2385 0.0
AT1G26970.1 | Symbols: | Protein kinase superfamily protein | ... 802 0.0
> AT1G69790.1 | Symbols: | Protein kinase superfamily protein
| chr1:26266609-26269013 FORWARD LENGTH=1588
Length=1588
Score = 2385 bits (1291), Expect = 0.0
Identities = 1497/1593 (94%), Gaps = 28/1593 (2%)
Strand=Plus/Plus
Query 1 GGTGCACACGTTTTTGGTGTTGACCAACGACAACGACAACGACAGACAAAATTTTATTAT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 1 GGTGCACACGTTTTTGGTGTTGACCTACGACAACGACAACGACAGACAAAAATTTATCAT 60
Query 61 CATACAAAACCTTTGtttgtctttatctcgttatt-ttttctaaatatcctctgtttctt 119
|||||||||||||| |||||||||||||| || || |||||| |||||||||||||||||
Sbjct 61 CATACAAAACCTTTCTTTGTCTTTATCTCATT-TTGTTTTCTTAATATCCTCTGTTTCTT 119
Query 120 cttctaattttctctgttttgattccttctgcttctgAGATCCATAAAGATTCATCTCTT 179
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 120 CTTCTAATTTTCTCTGTTTTTATTCCTTCTACTTCTGAGATCCATAAAGATTCATCTCTT 179
Query 180 -TTAGCTTCACCGGACCAGAAACCTCGATTTCAGTTTTCTTGATCTCTCTAATGGGGAAT 238
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTA-CTTCATCGGAAAAGAAACCTCGATTTCAGTTTTCTTGATCTCTCTAATGGGGAAT 238
Query 239 TGCTTGGACTCTTCTGCAAGAGTAGATAACAGAGAAAGCACTTTTGGAGGGTCATCAAGA 298
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 239 TGCTTGGACTCTTCTGCAAGAGTAGGTAATAGAGAAAGCACTTTTGGAGGGTCATCAAGA 298
Query 299 ATTTCCC-CTAAACTAAATCAGTCATCTTGTCTTTCAAGCCTCACCATACCTTCTTATAG 357
||||||| | |||| |||||||||||| | || ||||| ||||||||||||||||||||
Sbjct 299 ATTTCCCGC-AAACCGAATCAGTCATCTCGACTCTCAAGTCTCACCATACCTTCTTATAG 357
Query 358 CAACAATAGCTTCACTACTTCATCATGGTCAAATCTGACACCAAGAAGTGAAGGAGAGCT 417
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 358 CAACAATAGCTTCACTACTTCATCATGGTCAAATTTGACACCTAGAAGTGAAGGAGAGCT 417
Query 418 CTTACCATCTCCGACACTAAAGGCTTTTACATTCAACGAGCTAAAAACCGCTACTAGAAA 477
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 CTTACCATCTCCAACACTAAAGGCCTTTACATTCAACGAGCTAAAAACCGCTACTAGAAA 477
Query 478 CTTCAAGCCTAATAGTATGATCGGTGAAGGCGGTTTTGGTTATGTCTATAAAGGTTGGAT 537
||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 478 CTTCAAGCCGAATAGTATGATTGGTGAAGGCGGTTTTGGTTGTGTCTATAAGGGTTGGAT 537
Query 538 CGGTGAACGCTCGTTATCACCTTCGAAACCAGGGTCTGGTATGGTCGTTGCAGTCAAGAA 597
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 538 CGGTGAACGCTCGTTGTCACCTTCGAAACCAGGGTCCGGTATGGTTGTTGCAGTCAAGAA 597
Query 598 ACTTAAATCAGAAGGGTTTCAAGGACACAAAGAGTGGTTGACTGAGGTTCACTATCTTGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 ACTTAAATCAGAAGGGTTTCAAGGACACAAAGAGTGGTTGACTGAGGTTCATTATCTTGG 657
Query 658 GAGACTTCATCATATGAATCTTGTGAAGCTAATTGGATATTGCTTAGAGGGAGAGAAAAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAGACTTCATCATATGAATCTTGTGAAGCTAATTGGATATTGCTTAGAGGGAGAGAAAAG 717
Query 718 ACTTTTGGTTTACGAGTACATGCCTAAAGGAAGCTTGGAGAATCATCTGTTTCGAAGAGG 777
|||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 718 ACTTTTGGTTTACGAGTACATGCCTAAAGGAAGCCTGGAGAACCATCTATTTCGAAGAGG 777
Query 778 CGCAGAGCCAATTCCGTGGAAGACTAGGATGAAAGTGGCGTTTAGCGCAGCGAGAGGACT 837
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 778 CGCAGAGCCAATTCCGTGGAAGACTAGGATGAAAGTAGCTTTTAGCGCAGCGAGAGGACT 837
Query 838 -TGCTTTCCTTCACGAAGCTAAAGTCATATACCGAGACTTCAAGGCCTCCAATATTCTAC 896
| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 AT-CTTTCCTCCACGAAGCTAAAGTCATATACCGAGACTTCAAGGCCTCTAATATTCTAC 896
Query 897 TTGATGTGGATTTCAATGCAAAGCTATCTGATTTCGGATTGGCAAAAGCTGGACCAACAG 956
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 897 TTGATGTGGATTTCAATGCAAAGCTATCTGATTTTGGGTTGGCAAAAGCTGGACCAACAG 956
Query 957 GAGATAGAACCCATGTCACAACTCAAGTGATAGGCACACAAGGCTACGCCGCTCCGGAAT 1016
|||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 957 GAGATAGAACGCATGTGACAACTCAAGTGATAGGCACACAAGGGTACGCAGCTCCGGAAT 1016
Query 1017 ACATAGCAACCGGCCGGTTAACAGCCAAGAGTGATGTCTATAGCTTTGGAGTGGTGCTGC 1076
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1017 ACATAGCAACCGGCCGGTTAACCTCCAAGAGTGATGTCTATAGCTTTGGAGTGGTGTTGC 1076
Query 1077 TTGAACTACTCTCGGGACGTCCCACCCTAGACAAATCGAAAGTAGGAGTGGAACGTAATC 1136
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 TCGAACTACTCTCGGGTCGTCCCACCCTAGACAAATCGAAAGTAGGAGTGGAACGTAACC 1136
Query 1137 TGGTGGATTGGGCAATACCTTATTTGGTGGACAGAAGAAAAATGTTTAGAATAATGGACA 1196
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1137 TGGTGGATTGGGCAATACCTTATTTGGTGGACAGAAGAAAAGTGTTTAGAATAATGGACA 1196
Query 1197 CAAAGCTTGGAGGACAGTACCCTCACAAAGGGGCTTGCGCAGCTGCTAACATCGCATTGC 1256
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1197 CAAAGCTTGGAGGACAGTACCCTCACAAAGGGGCTTGTGCAGCTGCCAACATCGCATTGC 1256
Query 1257 GGTGTCTCAACACCGAACCTAAGCTGAGACCGGATATGGCTGATGTCTTATCCACTTTAC 1316
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 GGTGTCTCAATACCGAACCTAAGCTCAGACCGGATATGGCTGATGTCTTATCCACTTTAC 1316
Query 1317 AACAGCTTGAGACTTCTTCGAAAAAGACGGGTTCTACTCCAAATATAGTCATGTCTCCTT 1376
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1317 AACAGCTTGAGACTTCTTCAAAAAAGATGGGTTCTACTCAAAATATAGTCATGTCTCCTT 1376
Query 1377 CATCTCATATGTCGTAGAATAACAAGGGTCGAGATAT--CT-C-T--AAG-T---A-G-- 1423
||||||||||||||||| ||||||||| ||||||||| || | | ||| | | |
Sbjct 1377 CATCTCATATGTCGTAGTATAACAAGGTTCGAGATATTTCTGCGTTTAAGGTGGGAAGTA 1436
Query 1424 G-AGATTTA-GCAACCCTTTTGAGTCTGAGTATATACTTTTGCCA-AGTGTGTTGAATAG 1480
| |||| || | | ||||||||||||||| ||||||||||||| | |||||||| |||||
Sbjct 1437 GGAGATCTAAGGA-CCCTTTTGAGTCTGATTATATACTTTTGC-ATAGTGTGTT-AATAG 1493
Query 1481 TTTTGTACTTTCTCCTAAGATTATAGAATGTCTGGTTGGAAATGTAGATGTATATATGAT 1540
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1494 TTTGGTACTTTCTCTTAAGATTATAGAATGTCTGGTTG-AAATGTAGATGTATATATTAT 1552
Query 1541 GGAAAAGCTAATGTCATTTAATATTTTGAATTC 1573
|||||||| ||||||||||||||| ||||||||
Sbjct 1553 GGAAAAGCCAATGTCATTTAATATCTTGAATTC 1585
> AT1G26970.1 | Symbols: | Protein kinase superfamily protein
| chr1:9359682-9361833 FORWARD LENGTH=1550
Length=1550
Score = 802 bits (434), Expect = 0.0
Identities = 909/1131 (80%), Gaps = 62/1131 (5%)
Strand=Plus/Plus
Query 214 TTTCT-TGA-TCTCTCTAATGGGGAATTGC-TTGGACTCTTCTGCAAGAGTAGATAACAG 270
||||| ||| | | ||||||||| |||||| |||| | ||| |||| ||||| ||| ||
Sbjct 127 TTTCTCTGAGTTTTTCTAATGGGAAATTGCTTTGG-GTTTTCCGCAAAAGTAGGTAATAG 185
Query 271 AGAAAG-CACTTTTGGAGGGTCATCAAGAATTTC-CCCTAAACTAAATCAGTCATCTTGT 328
|||||| | ||| | | || || |||||||| || || ||| || ||| || ||| |
Sbjct 186 AGAAAGTC-CTTATCGTGGTTCGTCAAGAATCTCTGCC-AAAAGAAGTCAATCGTCTCGG 243
Query 329 CTTTCAAGCCTCACCATAC---CTTC-T-TATAGCAACAATAGCTTCACTACT-T--CAT 380
||||||||| | || |||| | || | | || |||| || | ||| | | | | |
Sbjct 244 CTTTCAAGCTTAACAATACAATCATCATCT-TA-CAACGAT-G--ACACGAGTGTGGCGT 298
Query 381 CATGGTCAAATCTGACACCAAGAAGTGAAGGAGAGCTCTTACCATCTCCGACACTAAAGG 440
| | ||||| | | || ||||||||||||||||||||| |||| || || |||||||
Sbjct 299 C-TCTTCAAA-C-G---CCTAGAAGTGAAGGAGAGCTCTTAGCATCGCCCACGCTAAAGG 352
Query 441 CTTTTACATTCAACGAGCTAAAAACCGCTACTAGAAACTTCAAG-CCTAATAGTATGATC 499
| ||||| || ||||||||||| || || ||||| || ||| || || ||||| | |||
Sbjct 353 CATTTACGTTTAACGAGCTAAAGACAGCCACTAGGAATTTC-AGACCCGATAGTGTTATC 411
Query 500 GGTGAAGGCGGTTTTGGTTATGTCTATAAAGGTTGGATCGGTGAACGCTCGTTATCACCT 559
|||||||||||||| ||||||||||| ||||| ||||||| ||||||| | ||||| |||
Sbjct 412 GGTGAAGGCGGTTTCGGTTATGTCTACAAAGGATGGATCGATGAACGCACTTTATCGCCT 471
Query 560 TCGAAACCAGGGTCTGGTATGGTCGTTGCAGTCAAGAAA-CTTAAATCAGAAGGGTTTCA 618
|| ||||||||||| || ||||||||||| ||||| ||| |||||| ||||||||||||
Sbjct 472 TCAAAACCAGGGTCAGGCATGGTCGTTGCTGTCAA-AAAGCTTAAAGAAGAAGGGTTTCA 530
Query 619 AGGACACAAAG-AGTGGTTGACTGAGGTTCACTATCTTGGGAGACTTCATCATATGAATC 677
||||||| | | |||||||| | |||||| | | ||||||||| ||||| ||||||||||
Sbjct 531 AGGACAC-AGGCAGTGGTTGGCGGAGGTTGATTGTCTTGGGAGGCTTCACCATATGAATC 589
Query 678 TTGTGAAGCTAATTGGATATTGCTTAG-AGGGAGA-GA-A-AAGACTTTTGGTTTACGAG 733
||||||| ||||||||||||||| | | |||| || | | | |||||||| || |||
Sbjct 590 TTGTGAAACTAATTGGATATTGC-TCGAAGGGTGATCATATTCGGCTTTTGGTGTATGAG 648
Query 734 TACATGCCTAAA-GGAAGCTTGGAGAATCATCTGTTTCGAAGAGGCGCAGAGCCAATTCC 792
|||||||| ||| |||||||||||||||||||| ||| || | || ||||| || |||||
Sbjct 649 TACATGCC-AAAGGGAAGCTTGGAGAATCATCTCTTTAGACGTGGGGCAGAACCGATTCC 707
Query 793 GTGGAAG-ACTAGGATGAAAGTGGCGT-TTAGCGCAGCGAGAGGACTTGCTTTCCTTCAC 850
|||| || || ||||| |||||||| | | | || |||||||| ||||||||||||||
Sbjct 708 GTGG-AGAACAAGGATTAAAGTGGC-TATCGGTGCGGCGAGAGGGCTTGCTTTCCTTCAT 765
Query 851 GAAGCTAAAGTCATATACCGAGACTTCAAGGCCTCCAATATTCTACTTGATGT-GGATTT 909
|||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||| ||
Sbjct 766 GAAGCTCAAGTCATATACAGAGACTTCAAGGCCTCCAATATTCTACTTGAT-TCGGAATT 824
Query 910 CAATGCAAAGCTATCTGATTTCGGATTGGCAAAAGCT-GGACCAACAGGAGATAGAACCC 968
|||||||||||| |||||||| |||||||| |||| | |||||||| ||||| ||||| |
Sbjct 825 CAATGCAAAGCTTTCTGATTTTGGATTGGCGAAAG-TAGGACCAACCGGAGACAGAACAC 883
Query 969 ATGTCA-CAACTCAAGTGATAGGCACACAAGGCTACGCCGCTCCGGAATACATAGCAACC 1027
| || | |||| |||||||| || || |||||||| || || || |||||| | || ||
Sbjct 884 ACGT-ATCAACCCAAGTGATGGGAACTCAAGGCTATGCAGCACCTGAATACGTTGCCACT 942
Query 1028 GGCCGGTTAACAGCCAAGAGTGATGTCTATAGCTTTGGAGTGGTGCT-GCTTGAACTACT 1086
|| ||| |||||||||| ||||| ||||| ||||| || ||||| || ||| || ||||
Sbjct 943 GGTCGGATAACAGCCAAAAGTGACGTCTACAGCTTCGGTGTGGT-CTTGCTAGAGTTACT 1001
Query 1087 CTCGGGACGTCCCACCCTAGACAAATCGAAAGTAGGAGTGGAACGTAATCTGGTGGATTG 1146
|||||||||| ||| |||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 1002 GTCGGGACGTCTGACCGTAGACAAAACGAAAGTAGGAGTGGAACGAAATCTGGTTGATTG 1061
Query 1147 GGCAATACCTTATTT-GGTGGACAGAAGAAAAATGTTTAGAATAATGGACACAAAGCTTG 1205
|||||||||||| || || | ||| ||| ||| ||||||| |||||||||||||||||||
Sbjct 1062 GGCAATACCTTACTTAGGAG-ACAAAAGGAAAGTGTTTAGGATAATGGACACAAAGCTTG 1120
Query 1206 GAGGACAGTACCCTCACAAAGGGGCTTGC--GCAGCTGCTAACA-TCGCATTGCGGTGTC 1262
| ||||| || ||||||||||| ||||| | | ||||||| | | || |||| ||||
Sbjct 1121 GGGGACAATATCCTCACAAAGGAGCTTGTTTG-A-CTGCTAATACT-GCGTTGCAATGTC 1177
Query 1263 TCAA-CACCGAACCTAAGCTGAGACCGGATATGGCTGATGTCTTATCCACT 1312
| || || ||||||||| |||| || | ||| ||||||| ||||| |||
Sbjct 1178 TTAATCAA-GAACCTAAGTTGAGGCCAAAGATGTCTGATGTGTTATCTACT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5