BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476111
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69800.2 | Symbols: | Cystathionine beta-synthase (CBS) pro... 2303 0.0
> AT1G69800.2 | Symbols: | Cystathionine beta-synthase (CBS) protein
| chr1:26274230-26276329 REVERSE LENGTH=1621
Length=1621
Score = 2303 bits (1247), Expect = 0.0
Identities = 1395/1466 (95%), Gaps = 11/1466 (1%)
Strand=Plus/Plus
Query 148 AAATTGAATCGGTATCAAGATATGGCGGGAAGTGAACCGGTAGAAGATAAGGAGATAAAA 207
||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 71 AAATTGAGCCGGTATCAAGACATGGCGGGAAGTGAAGCGGTAGAAGATAAGGAGATAAAA 130
Query 208 TCGGCTGTTTCGAGCTGTGAGGCGTATTTCGACAAAGTACAATCAAGGAAGAATCTTCCC 267
||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 131 TCGGCGGTTTCAAGCTGTGAAGCGTATTTCGAGAAAGTACAATCAAGGAAGAATCTACCC 190
Query 268 AAATCTCTTCAAGAAACCCTAAACTCTGCTTTCGCCGGAATCCCCGTCTCCTCCTTTCCT 327
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 191 AAATCTCTTCAAGAAACCCTAAACTCTGCTTTCGCCGGAATCCCAGTCTCCTCCTTCCCT 250
Query 328 CAAGTCCCCGGCGGTAGAGTGATAGAGATACCAGCGGAAACACCTGTATCAGAAGCAGTA 387
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 251 CAAGTCCCCGGCGGCAGAGTGATAGAGATTCAAGCGGAAACACCTGTATCAGAAGCAGTA 310
Query 388 AAGATTTTATCAGACAGCAAGATTCTATCAGCTCCTGTGATTAACACAGATCACGAGAGT 447
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AAGATCTTATCAGATAGCAAGATTCTATCAGCTCCTGTGATTAACACAGATCACGAGAGT 370
Query 448 TCCTTAGATTGGAGAGAAAGATATTTAGGAATCATTGATTACTCTTCAATCATCTTATGG 507
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 371 TCTTTAGATTGGAGAGAAAGATATTTAGGAATCATTGACTACTCTTCAATCATCTTATGG 430
Query 508 GTGTTAGAGAGTGCTGAACTCGCTGCAATCGCGTTGTCCGCTACGTCAGCAACCGCTGCT 567
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 431 GTGCTAGAGAGTGCTGAACTCGCTGCAATCGCGTTGTCCGCTACGTCAGCAACTGCTGCT 490
Query 568 GGTGTTGGTGCTGGAGCTGTTGGAGCTCTTGGTGTTGCAGCGCTCGGGGTGACCGGTCCG 627
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 491 GGTGTTGGTGCTGGAGCTGTTGGAGCTCTTGGTGTTGCAGCGCTCGGGATGACCGGTCCG 550
Query 628 GTTGCTGTTGCAGGGCTAGCGGCGGCTGCGGTTGGAGCCGCGGTTGCTGGTGGTGTTGCA 687
||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 551 GTTGCTGCTGCGGGGCTAGCCGCAGCTGCGGTTGGAGCCGCGGTTGCTGGTGGTGTTGCA 610
Query 688 GCTGACCGTGGGATTGGGAAAGATGCTCCAACTGCTGCTGATAATTTAGGGAAAGATTTC 747
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 611 GCTGAACGTGGGATTGGAAAAGATGCTCCAACTGCTGCTGATAAGTTGGGGAAAGATTTC 670
Query 748 TATCAAGTCATTCTTCAAGAAGAGCCTTTTAAATCAACCACTGTTAGAACAATACTTAAG 807
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TATGAAGTTATTCTTCAAGAAGAGCCTTTTAAATCAACCACTGTTAGAACAATACTTAAG 730
Query 808 TCGTTTAGATGGGCTCCTTTTCTTCCGGTTTCAACTGAGAGTTCGATGTTGAGTGTTATG 867
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 TCGTTTAGATGGGCTCCTTTTCTTCCGGTTTCAACAGAGAGTTCGATGTTGAGTGTTATG 790
Query 868 TTGTTACTCTCGAAATACCGGTTAAGGAATGTGCCGGTTATTAAAGCAGGAGAACCGGAT 927
||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 791 TTGTTACTCTCGAAATATCGGTTAAGAAATGTGCCGGTTATTAAAACAGGAGAACCGGAT 850
Query 928 ATCAAGAACTATGTTACTCAATCTGCAGTTGTTCATGGTCTTGAAGGTTGCAAAGGTAGA 987
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ATCAAGAACTACGTTACTCAATCTGCAGTTGTTCATGGTCTTGAAGGTTGCAAAGGTAGA 910
Query 988 GATTGGTTTGATCACATTTCTGCTCTCTCGATTTCTGATCTTGGCCTGCC-TTTCATGTC 1046
|||||||||||||||||||| |||||| ||||||||||||| ||||| || ||| |||||
Sbjct 911 GATTGGTTTGATCACATTTCCGCTCTCCCGATTTCTGATCTCGGCCTCCCGTTT-ATGTC 969
Query 1047 ACCCAATGAGGTTATTAGCATTGAGAGTGAAGAACTTATCCTTGAAGCATTCAAGCGGAT 1106
|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 970 ACCCAATGAGGTTATTAGCATTGAGAGTGAGGAACTTATCCTTGAAGCATTTAAAAGGAT 1029
Query 1107 GAGAGACAATAACATTGGTGGTCTCCCTGTAGTTGAAGGGTTGAATAAGAAGATTGTTGG 1166
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GAGAGACAACAACATTGGTGGTCTCCCTGTAGTTGAAGGGTTGAATAAGAAGATTGTTGG 1089
Query 1167 TAACATTAGCATGAGAGACATCAGATATTTGCTTCTACAACCTGAAGTCTTCTCCAATTT 1226
||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 1090 TAACATTAGCATGAGAGACATTAGATATTTGCTTTTACAACCTGAAGTCTTTTCCAATTT 1149
Query 1227 CAGACAACTCACAGTGAAGAGTTTTGCGACAAAGATTGCTACCGCAGGG-GAGGAATATG 1285
|||||||||||| ||||||||||| ||||||||||||||||| || ||| |||||||| |
Sbjct 1150 CAGACAACTCACGGTGAAGAGTTTCGCGACAAAGATTGCTACAGC-GGGAGAGGAATACG 1208
Query 1286 GTTTAGCGATTCCTGCGATAACTTGTAGGCCTGATTCGACTTTGGGGAGTGTTATAAACA 1345
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1209 GTTTAGCGATTCCTGCAATAACTTGTAGGCCTGATTCGACTTTAGGGAGTGTTATAAACA 1268
Query 1346 GTTTGGCTTCGAGGTCGGTGCATCGGGTTTATGTAGCGGCTGGAGATGAGAATGAGCTTT 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GTTTGGCTTCGAGGTCGGTGCATCGGGTTTATGTAGCGGCTGGAGATGAGAATGAGCTTT 1328
Query 1406 ATGGGGTTATAACACTGAGGGATGTGATCTCTTGTTTCGTATCAGAACCTCCAAACTACT 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1329 ATGGGGTTATAACACTGAGGGATGTGATCTCTTGTTTCGTATCAGAACCTCCAAATTACT 1388
Query 1466 TTGAGAACTGTCTCGGGTTCTCGGTTAAAGAAATGCTTAACCGATGATCTCTTGTTTCTC 1525
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1389 TTGAGAACTGTCTCGGTTTCTCGGTTAAGGAAATGCTTAACCGATGATCTCTTGTTTCTC 1448
Query 1526 AGCttttttttttgtttgtctttgttgtttgttCCTTCTTGGGTTAGATT-CTGAAGTTG 1584
||||||||||| | | ||||||||||||||| ||||||| ||||||| |||||||||
Sbjct 1449 AGCTTTTTTTT--G---G-CTTTGTTGTTTGTTCTTTCTTGGTTTAGATTTCTGAAGTTG 1502
Query 1585 TTATCTTTATATCTAATTTGTAACCA 1610
|| |||||||||||||||||||||||
Sbjct 1503 TTGTCTTTATATCTAATTTGTAACCA 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5