BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476122 Length=1222 Score E Sequences producing significant alignments: (Bits) Value AT1G69960.1 | Symbols: PP2A | serine/threonine protein phosphat... 1862 0.0 > AT1G69960.1 | Symbols: PP2A | serine/threonine protein phosphatase 2A | chr1:26348721-26350697 REVERSE LENGTH=1281 Length=1281 Score = 1862 bits (1008), Expect = 0.0 Identities = 1174/1250 (94%), Gaps = 28/1250 (2%) Strand=Plus/Plus Query 1 AAATACAAAGTTCCAACGAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGA- 59 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 32 AAATACAAAGTTCCAACAAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGAG 91 Query 60 -G-TGATGATGATAGATAGAGTGAATCC-AA-TC--A-C-GAACCG-GA-T-----CAAT 104 | ||||||||||||||||| ||||||| || | | | || ||| || | |||| Sbjct 92 TGATGATGATGATAGATAGATTGAATCCAAACACAAACCGGATCCGAGATTAAAAACAAT 151 Query 105 CCGGATTG-----------TTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 153 |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 152 CCGGATTGTTTATATTTACTTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 211 Query 154 ATCGTCAGATCGAACAGCTTATGGAGTGTAAACCGTTATCTGAAGCGGAGGTGAAGATGT 213 ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 212 ATCGTCAGATCGAGCAGCTTATGGAGTGTAAAGCGTTATCTGAAACGGAGGTGAAGATGT 271 Query 214 TGTGTGAGCAAGCGAAGACGATTCTTGTGGAGGAGTATAATGTTCAACCGGTTAAATGTC 273 |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 272 TGTGTGAGCACGCAAAGACGATTCTTGTGGAAGAGTATAATGTTCAACCGGTTAAATGTC 331 Query 274 CGGTTACCGTCTGCGGCGATATCCATGGCCAATTTTACGATCTGATTGAGCTTTTTCGGA 333 |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| | Sbjct 332 CGGTTACCGTCTGCGGTGATATCCACGGCCAATTTTACGATCTAATCGAGCTTTTTCGTA 391 Query 334 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGCGATTATGTTGATCGAGGGT 393 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 392 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGTGATTATGTTGATCGAGGGT 451 Query 394 ATTATTCTGTGGAGACGGTTTCGCTTTTGGTAGCGCTGAAAGTTCGCTACAGGGATAGAC 453 |||||||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||| Sbjct 452 ATTATTCTGTGGAGACAGTCTCACTTTTGGTAGCACTGAAAGTTCGTTACAGAGATAGAC 511 Query 454 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGATTTTATG 513 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 512 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGGTTTTATG 571 Query 514 ATGAGTGCTTGAGGAAATATGGGAATGCGAATGTGTGGAAGCACTTCACTGACCTTTTTG 573 |||| || |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| Sbjct 572 ATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTG 631 Query 574 ATTATCTTCCTCTTACAGCTCTCATTGAGAGTCAGGTTTTCTGTTTACATGGGGGACTTT 633 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 632 ATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGGTTTTCTGTTTACATGGAGGACTTT 691 Query 634 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 751 Query 694 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 811 Query 754 TATCTCCTCGTGGTGCAGGCTACACTTTTGGACAAGATATCGCTACTCAGTTTAACCACA 813 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 812 TATCTCCTCGTGGTGCAGGCTACACTTTCGGACAAGATATCGCTACTCAGTTTAACCACA 871 Query 814 CCAATGGACTCTCTCTGATTTCAAGAGCACACCAACTTGTCATGGAAGGTTATAATTGGT 873 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 872 CCAATGGACTCTCTCTGATTTCAAGAGCACATCAACTTGTCATGGAAGGTTTTAATTGGT 931 Query 874 GCCAAGAAAAGAACGTTGTTACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 933 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 932 GCCAAGAAAAGAACGTTGTGACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 991 Query 934 ATATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 993 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 992 ACATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 1051 Query 994 CAGCTCCACGTCAAGTCGAACCTGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1053 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1052 CAGCTCCACGTCAAGTCGAACCCGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1111 Query 1054 TACCAAAAGAACTAAAGTTGCAATTCCACACACTAGCACTTTGTCTCTTTTGCTTCTATT 1113 ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| Sbjct 1112 TACCAAAAGAACTAAAGCTGCAATTCCACACACTAGCTCTTCGTCTCTTTTGCTTCTATT 1171 Query 1114 CTTAACCACTTTTTGTAATCTCATATTCCTTATGTCTATTTCTGTTTGCGAAACTCTCCA 1173 ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| Sbjct 1172 CTTAACCACTTTTTGTAATTTCATATTCCTTACGTCTATTTCTGTTTGTTAAACTCTCCA 1231 Query 1174 TTGTCTTTAAAAATCAGTAAtttttt-tGTGCAAAGATTCTGGTTCAAGT 1222 |||||||| |||||| |||||||||| ||||||||||||||||| ||||| Sbjct 1232 TTGTCTTTTAAAATCCGTAATTTTTTGTGTGCAAAGATTCTGGTCCAAGT 1281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60039851820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5