BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476122
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69960.1 | Symbols: PP2A | serine/threonine protein phosphat... 1862 0.0
> AT1G69960.1 | Symbols: PP2A | serine/threonine protein phosphatase
2A | chr1:26348721-26350697 REVERSE LENGTH=1281
Length=1281
Score = 1862 bits (1008), Expect = 0.0
Identities = 1174/1250 (94%), Gaps = 28/1250 (2%)
Strand=Plus/Plus
Query 1 AAATACAAAGTTCCAACGAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGA- 59
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 32 AAATACAAAGTTCCAACAAAAATCGAAATTCACAATTTCTCTTCTTCTAAATCCATGGAG 91
Query 60 -G-TGATGATGATAGATAGAGTGAATCC-AA-TC--A-C-GAACCG-GA-T-----CAAT 104
| ||||||||||||||||| ||||||| || | | | || ||| || | ||||
Sbjct 92 TGATGATGATGATAGATAGATTGAATCCAAACACAAACCGGATCCGAGATTAAAAACAAT 151
Query 105 CCGGATTG-----------TTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 153
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 152 CCGGATTGTTTATATTTACTTTAGATCGGAGAAAGATGCCGCCGGCGACCGGAGATATCG 211
Query 154 ATCGTCAGATCGAACAGCTTATGGAGTGTAAACCGTTATCTGAAGCGGAGGTGAAGATGT 213
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 212 ATCGTCAGATCGAGCAGCTTATGGAGTGTAAAGCGTTATCTGAAACGGAGGTGAAGATGT 271
Query 214 TGTGTGAGCAAGCGAAGACGATTCTTGTGGAGGAGTATAATGTTCAACCGGTTAAATGTC 273
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 272 TGTGTGAGCACGCAAAGACGATTCTTGTGGAAGAGTATAATGTTCAACCGGTTAAATGTC 331
Query 274 CGGTTACCGTCTGCGGCGATATCCATGGCCAATTTTACGATCTGATTGAGCTTTTTCGGA 333
|||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| |
Sbjct 332 CGGTTACCGTCTGCGGTGATATCCACGGCCAATTTTACGATCTAATCGAGCTTTTTCGTA 391
Query 334 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGCGATTATGTTGATCGAGGGT 393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 392 TCGGTGGTTCTTCTCCTGATACTAATTATCTTTTCATGGGTGATTATGTTGATCGAGGGT 451
Query 394 ATTATTCTGTGGAGACGGTTTCGCTTTTGGTAGCGCTGAAAGTTCGCTACAGGGATAGAC 453
|||||||||||||||| || || ||||||||||| ||||||||||| ||||| |||||||
Sbjct 452 ATTATTCTGTGGAGACAGTCTCACTTTTGGTAGCACTGAAAGTTCGTTACAGAGATAGAC 511
Query 454 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGATTTTATG 513
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 512 TTACTATCCTAAGAGGGAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGGTTTTATG 571
Query 514 ATGAGTGCTTGAGGAAATATGGGAATGCGAATGTGTGGAAGCACTTCACTGACCTTTTTG 573
|||| || |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 572 ATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTG 631
Query 574 ATTATCTTCCTCTTACAGCTCTCATTGAGAGTCAGGTTTTCTGTTTACATGGGGGACTTT 633
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 632 ATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGGTTTTCTGTTTACATGGAGGACTTT 691
Query 634 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGGTTCCAC 751
Query 694 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 ATGAAGGACCAATGTGTGATCTCTTATGGTCTGATCCAGATGACCGATGCGGTTGGGGAA 811
Query 754 TATCTCCTCGTGGTGCAGGCTACACTTTTGGACAAGATATCGCTACTCAGTTTAACCACA 813
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 812 TATCTCCTCGTGGTGCAGGCTACACTTTCGGACAAGATATCGCTACTCAGTTTAACCACA 871
Query 814 CCAATGGACTCTCTCTGATTTCAAGAGCACACCAACTTGTCATGGAAGGTTATAATTGGT 873
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 872 CCAATGGACTCTCTCTGATTTCAAGAGCACATCAACTTGTCATGGAAGGTTTTAATTGGT 931
Query 874 GCCAAGAAAAGAACGTTGTTACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 933
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GCCAAGAAAAGAACGTTGTGACTGTATTTAGTGCCCCAAACTATTGCTACCGTTGTGGCA 991
Query 934 ATATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 993
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 ACATGGCTGCGATTCTAGAGATCGGTGAGAACATGGACCAGAATTTCCTTCAGTTTGATC 1051
Query 994 CAGCTCCACGTCAAGTCGAACCTGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1053
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1052 CAGCTCCACGTCAAGTCGAACCCGAAACCACTCGCAAGACTCCAGATTATTTTTTGTAAG 1111
Query 1054 TACCAAAAGAACTAAAGTTGCAATTCCACACACTAGCACTTTGTCTCTTTTGCTTCTATT 1113
||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1112 TACCAAAAGAACTAAAGCTGCAATTCCACACACTAGCTCTTCGTCTCTTTTGCTTCTATT 1171
Query 1114 CTTAACCACTTTTTGTAATCTCATATTCCTTATGTCTATTTCTGTTTGCGAAACTCTCCA 1173
||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1172 CTTAACCACTTTTTGTAATTTCATATTCCTTACGTCTATTTCTGTTTGTTAAACTCTCCA 1231
Query 1174 TTGTCTTTAAAAATCAGTAAtttttt-tGTGCAAAGATTCTGGTTCAAGT 1222
|||||||| |||||| |||||||||| ||||||||||||||||| |||||
Sbjct 1232 TTGTCTTTTAAAATCCGTAATTTTTTGTGTGCAAAGATTCTGGTCCAAGT 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5