BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476123

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69970.1 | Symbols: CLE26 | CLAVATA3/ESR-RELATED 26 | chr1:2...   455    1e-127


> AT1G69970.1 | Symbols: CLE26 | CLAVATA3/ESR-RELATED 26 | chr1:26353900-26354256 
REVERSE LENGTH=357
Length=357

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 282/299 (94%), Gaps = 3/299 (1%)
 Strand=Plus/Plus

Query  1    ATGCGAAATCACCACTCCCTTCGTCTCCAATTGTTGTTCCGTACACTATTTACGGTTGGT  60
            ||||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  1    ATGCGAAATAACCATTCCCTTCGTCTCCAATTGTGGTTCCGTACACTATTTACTGTTGGT  60

Query  61   TTAGTCAGTACTCTTCTTATGATCAATGCGTTTGTATTACAAAACAACAAGGAGGGCGAC  120
             |||||   ||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  61   GTAGTC---ACTCTTCTTATGATCGATGCGTTTGTATTACAAAACAACAAGGAGGACGAC  117

Query  121  AAAACGAAAGAGATTACTACAGCTGTGAACATGAACAACTCCGATGCCAAGGAAATACAA  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  AAAACAAAAGAGATTACTACAGCTGTGAACATGAACAACTCCGATGCCAAGGAAATACAA  177

Query  181  CAAGAGCTTGAAGATGGTTCAAGAAACGGCGATCTTAGTTACGTAGCGAGCAAAAGAAAA  240
            ||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct  178  CAAGAGCTTGAAGATGGTTCAAGGAACGACGATCTTAGCTACGTAGCAAGCAAAAGAAAA  237

Query  241  GTGCCTCGTGGACCTGATCCTATACACAACAGGTTCTTACTAATTTCTTGTTTTATTTT  299
            |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  238  GTGCCTCGTGGACCTGATCCTATACACAACAGGTTCTTACTACTTTCTCGTTTTATTTT  296



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15482466692


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5