BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476125
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69980.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 1094 0.0
> AT1G69980.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:26356356-26357667 REVERSE LENGTH=841
Length=841
Score = 1094 bits (592), Expect = 0.0
Identities = 706/759 (93%), Gaps = 16/759 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAGAAACAGCAAAAATGGCTTCTCAGAGTTCTTCACTATTTCTGGTCACCTTCT 60
|||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1 AAGAAGAAGAAACAACAAAAATGGCTTCTCAGAGTTCTTCACTTTTTCTGGTTATCTTCT 60
Query 61 TCATCTTCATCTACGCTTCTTCAATTTCATCCTCTCTTCTCGCCAGAGCACATGAACATG 120
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 TCATCTTCATCTACGCTTCTTCAATTCCATCCTCTATTCTCGCCAGAGCACATGAACATG 120
Query 121 ACGGAGATGAAGAGATCAGAAGCGTTGGACGGAGATTACTTCTAGGTTTCAAAGAAACTC 180
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 121 ACGGAGATGAAGAGATCAGAAGCGTTGGGCGTAGATTCCTTCTAGGTTTCAAAGAAACTC 180
Query 181 CAAAAGGAAGTAATATCACCTTCGCATGTTCTCCTTCAGGTCCTTGTGTTTCTTGCAATT 240
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 181 CAAAAGGAAGTAATATCACCTTCGCTTGTTCTCCTTCAGGTCCTTGTGTCTCTTGCAATT 240
Query 241 CCTCTGAAAAGAGAAAAGAGAAGTATCGTTGTAGTGAAACTGGTTATCGTATTCCATTT- 299
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 CCTCCGAAAAGAGAAAAGAGAAGTATCGTTGCAGTGAAACTGGTTATCGTATTCC-TTTC 299
Query 300 AAATGTaaagagatgagagaagaagtggatccacacaagaaaaatggagaagaagaaaca 359
|||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 300 AAATGTAAAGAGGTTAGAGAAGAAGTGGATGCACATAAGAAAAATGGAGAAGAAGAAACA 359
Query 360 aaaaaTGATCAATCGAA---CAATGAGGAAGAAGCGAAAACGAGGAATCTGTTGGATGAT 416
|||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 360 CAAAATGATCAATCGAATAACAATGACGAAGAAGCGAAAACAAGGAATCTGTTGGATGAT 419
Query 417 TCA-C-C-GGCGTCGAAAGTGAAGTCTCAGTCTTACAAAACTTATCGAAGCTGTGTGCCT 473
||| | | |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TCATCACCGGCGACGAAAGTGAAGTCTCAGTCTTACAAAACTTATAGAAGCTGTGTGCCA 479
Query 474 TCTGCAGATGAAGAGAAGTTATCAGTTCTTGGTTTTGAGTCGATTATGCTAGGACTGTTT 533
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTGCAGACGAAGAGAAGTTATCAGTTCTTGGTTTTGAGTCGATTATGCTAGGACTGTTT 539
Query 534 TT-TATAAGCGGAGCTGCTATATACATCAGAAAGAGACAGACAGTACCGATGCTTGGGGT 592
| | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 540 CTGT-TAAGCGGAGCTGCTATTTACATCAGAAAGAGACAGACGGTACCGATGCTTGGGGT 598
Query 593 GTCA--A-GTGGAAGATCACAAAGCAAATCTCGGTTTTAAAAGAACCCTTTCTCGGTATG 649
||| | ||||||||| ||| |||| |||||||||| |||||||| ||||||||||||
Sbjct 599 ATCATCAAGTGGAAGATTGCAAGGCAATTCTCGGTTTTGAAAGAACCATTTCTCGGTATG 658
Query 650 TAAA-GCTTTCATCTACTCACTCAGAAACAGATTTAACATTTGTCATTGTCTGTTGAAAA 708
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TAAAAGCTTTCATCTGCTCACTCAGAAACAGATTTAACATTTGTCATTGTCTGTTGAAA- 717
Query 709 GACGAGAATATGCTTGAGTGTATAGAATAGCTTTAGGGG 747
|| |||| |||| ||||||||||||||||||||||||||
Sbjct 718 GATGAGA-TATGTTTGAGTGTATAGAATAGCTTTAGGGG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5