BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476127
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70000.1 | Symbols: | myb-like transcription factor family ... 957 0.0
> AT1G70000.1 | Symbols: | myb-like transcription factor family
protein | chr1:26363278-26364699 REVERSE LENGTH=1246
Length=1246
Score = 957 bits (518), Expect = 0.0
Identities = 669/738 (91%), Gaps = 25/738 (3%)
Strand=Plus/Plus
Query 1 TCTTTACCTTTTTCATTCCAAAATAtctctctctctctctctcCCTATCT--CGCGAGCA 58
|||||||||||||||||||||||| |||||||||||||||||| | ||| | || | |
Sbjct 1 TCTTTACCTTTTTCATTCCAAAATCTCTCTCTCTCTCTCTCTCTTTCTCTGGCTCGGGAA 60
Query 59 GCTTCCATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGT 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 G--AAGATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGT 118
Query 119 CCAACAGAGATAACCAGCACCGGCGATAACAACGGCGGCAGCGGCGGCGGAGAGAAAGCC 178
|| || || ||||| | |||||| || ||||| || || |||||||| |||||||||
Sbjct 119 CCGACGGACATAACTACCACCGGTGACAACAA---CGACAAAGGCGGCGGGGAGAAAGCC 175
Query 179 ATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGTT 235
Query 239 AGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCCGCCGATGACGGT 298
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 236 AGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCAACCGATGACGGT 295
Query 299 GGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGAAACCGCGAACGCAAACGAGGA 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 296 GGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGAAACCGTGAACGCAAACGAGGA 355
Query 359 ACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATATAGTTGGAAAA 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 ACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATAAAGTTGGAAAA 415
Query 419 GGTGATTGGAGAGGCATTTCAAGAAACTTTGTTAAAACTCGAACACCGACTCAGGTCGCG 478
|||||||||||||| || || |||||||||||||||||||||||||| |||||||| |||
Sbjct 416 GGTGATTGGAGAGGAATCTCTAGAAACTTTGTTAAAACTCGAACACCTACTCAGGTAGCG 475
Query 479 AGCCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGCCGTCGTCGTAGATCA 538
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 AGTCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGTCGTCGTCGTAGATCA 535
Query 539 AGCCTCTTCGACATCACTCCCGATTCGTTTAAAGGATC-TGCAAAAGAAGAGAATCTCTT 597
||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||| ||
Sbjct 536 AGCCTCTTCGATATCACTCCCGATTCGTTTATAGGATCAT-CAAAAGAAGAGAATCAGTT 594
Query 598 GCATACTCCATTGGATGGATCAAAACTAATCCGTCCGGTTCCGATTCCGATTCCGATTCC 657
|| ||||||||||| | | |||||||||| ||||||||||| |||||||||||
Sbjct 595 ACAGACTCCATTGGA-G---C-----TAATCCGTCCAGTTCCGATTCCTATTCCGATTCC 645
Query 658 TCCGTCGCGGAAAATGGCAGATTTGAATCTTAATCA-GAAAA---CTC-AGCCGACAACG 712
||||||||||| ||||| |||||||||||||| || ||||| ||| ||| |||||||
Sbjct 646 ACCGTCGCGGAAGATGGCTGATTTGAATCTTAA-CAAGAAAAAAACTCCAGC-GACAACG 703
Query 713 GAGATGTTTCCGTTGTCG 730
|||||||||||| |||||
Sbjct 704 GAGATGTTTCCGCTGTCG 721
Score = 449 bits (243), Expect = 2e-125
Identities = 339/380 (89%), Gaps = 28/380 (7%)
Strand=Plus/Plus
Query 759 CCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTATAATGGGAGTGGCTTGATGAA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTATAATGGGAGTGGCTTGATGAA 854
Query 819 GAAGATAATGTTTTAATTAATTTATATTGTATAAGATAAGATCTGAATGATGGTTAATGT 878
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 855 GAAGATAATGTTTTAATTAATTTATATTGTATAAGATAAGATCTGGATGATGATTAATTT 914
Query 879 GAAATTTGAGAATTAGGCTAATTAGATACTTTGAT--G--T----T---T------G--- 918
||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 915 GAAATTTGAGAATTAGGCTAATTAGATACTTTGATCAGAATCAAGTGAGTTTTTAAGTTT 974
Query 919 -AATTAGTGTGTACATGTTTTTT-GCCCTTTTTGGGGGAAACTACTTGTCGTTTTTGTTG 976
|||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 975 GAATTAGTGTGTACATGTTTTTTTGCTCTTTTTGGGGGAAACGACTTGTCGTTTTTGTTG 1034
Query 977 TTGTATGCTGTAAAACAACAGGTAGTCTCTGGGTTGTTTTGGTCAAGACTTCATCAGATT 1036
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1035 TTGTATGATGTAAAACAACAGGTAGTCTCTGTGTTGTTTTGGTCAAGACTTGATCAGATT 1094
Query 1037 CAGAAGTGAAGACTACTTCAAGCTTAAAATAGTTATATGTTGTGTCAGTCTCTTGAAAAG 1096
||||||||||||| ||||||||||||| |||||| || | |||||| | | ||||||||
Sbjct 1095 CAGAAGTGAAGACGACTTCAAGCTTAAGATAGTT-TA-GATGTGTC--T-T-TTGAAAAG 1148
Query 1097 TTAAAATAGAATGGTTATTG 1116
|| ||| |||||||||||||
Sbjct 1149 TTTAAACAGAATGGTTATTG 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5