BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476128
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70030.1 | Symbols: | Paired amphipathic helix (PAH2) super... 1018 0.0
> AT1G70030.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:26378794-26380379 FORWARD LENGTH=737
Length=737
Score = 1018 bits (551), Expect = 0.0
Identities = 682/744 (92%), Gaps = 13/744 (2%)
Strand=Plus/Plus
Query 1 AAGTCTTTTGTATCTGCCTGTAAGCCTGTTACGTGTGAGCACTTGCCAGTTGTCAGTTTC 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTCTTTTGTATCTTCCTGTAAGCCTGTTACGTGTGAGCACTTGCCAGTTGTCAGTTTC 60
Query 61 AAAACCATGGTTGCAAATAAGAAGCTAACTACAAATGATGCACTTGATTTCCTCAAGGCT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 61 AAAACCATGGTTGCAAATAAGAAGCTAACTACAACCGATGCACTTGATTTCCTCCAT-CT 119
Query 121 -GTAAAAGA-TAAATATCAAGATAATCGTGAAATATATGAGAGATTTCTTACGGTCATGA 178
|||||| | |||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 120 TGTAAAA-ACTAAATATCAAGATAATCGTGAAATATATGATAGTTTTCTTACGATCATGA 178
Query 179 AGGACTTCAAAGCTCAAAGAGCTCATACATGTGATGTCATATCTAGAGTGAAAGAACTCT 238
|||| |||| || ||| |||||| | |||||||| |||||||| | ||||||||||||||
Sbjct 179 AGGATTTCAGAGGTCAGAGAGCTAAAACATGTGACGTCATATCAAAAGTGAAAGAACTCT 238
Query 239 TCAAAGGGCAACCAGAGCTTCTCTTAGGTTTCAACACATTCTTGCCAATGGG-TTTCGAG 297
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 239 TCAAAGGGCAACCAGAGCTTCTCTTAGGTTTCAACACATTCTTGCCAACGGGGTTT-GAA 297
Query 298 ATAACACTC-GAAGATGACCAACGTCCATCAAATTTGAAGTCTGCTCACTTTGACGATGC 356
||||||||| | |||||| ||| | | ||||||| ||||| ||||||||||||||| ||
Sbjct 298 ATAACACTCAGT-GATGACGAACTTACGTCAAATTCGAAGTTTGCTCACTTTGACGAAGC 356
Query 357 ATATGAATTTGTCAACAAGGTCAAGACAAGATTTCAGAACAATGATGTATTCAAGTCATT 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 ATATGAATTTGTCAACAAGGTCAAGACAAGATTTCAGAACAATGATGTATTCAACTCATT 416
Query 417 TTTAGACGTTTTAAAAACGTATAAAAAGGAAAACAAGAGCTTTGCTGAGCTCTACCAGGA 476
|||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 417 TTTAGAGGTTTTGAAAACGCATAAAAAGGAAAACAAGAGCGTTGCTGAGCTCTACCAGGA 476
Query 477 GGTGGCTATCCTTTTTCAAGGCCATC-AGGACTTGCTTGAGGAATTTCATCAGTTTCTTC 535
|||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 477 GGTGGCTATCCTTTTTCAAGGCCATCGAG-ACTTGCTTGAGGAATTTCATCTCTTTCTTC 535
Query 536 CTCATTATGGATGAAGAATGATGCATTATGTATACAAATGAAGTCATGAAAGTTGTGGTT 595
| ||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||
Sbjct 536 CACATTATGGATGAAGAATGATGAATTATGTATACAA-TGAAGCCATGCAAGTTGTGGTT 594
Query 596 CAA-GCCACTTTATCTGCTTCCATCTTGACTCAATGGGCATTATCCTTAGTTTGTTGCTG 654
||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 595 CAAAGCCACTTTATCTGCTTCCAT-TTGACTCAATGGGGATTATCATTAGTTTGTTGCTG 653
Query 655 AACTGGTAAAACTAGTACTCTATGTTTCAAGTTGTTTTATACTATTCAAAATGAATAATA 714
|||||||||||||||||||| || |||||||||||||||||||||| ||| |||||| ||
Sbjct 654 AACTGGTAAAACTAGTACTCAATTTTTCAAGTTGTTTTATACTATTTAAACTGAATATTA 713
Query 715 TGGATACTCCACAACTTATATATC 738
|||||| | ||||| |||| ||||
Sbjct 714 TGGATAATACACAAATTATTTATC 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5