BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476134
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70100.3 | Symbols: | unknown protein; BEST Arabidopsis tha... 1731 0.0
> AT1G70100.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24160.2);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:26403083-26406098 FORWARD LENGTH=2039
Length=2039
Score = 1731 bits (937), Expect = 0.0
Identities = 1268/1416 (90%), Gaps = 70/1416 (5%)
Strand=Plus/Plus
Query 1 AATTTTGTGGGCTATCTTCACTTTTTCAGGATTCTTTCTGGTGAGCATTAATGGTGGATA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AATTGTGTGGGCTATCTTCACTTTTTCAGGATTCTTTCTGGTGAGCATTAATGGTGGATA 268
Query 61 TGGAAGTTGGCACCGCCAATGGTGAAGATAAGATAATGACCGCAACTTCATCGAATCAAG 120
|||||||||| | |||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 269 TGGAAGTTGGTATTGCCAGTGGTGAAGATAAGATAACGACCGCGGCTTCATCGAATCAAG 328
Query 121 AACTGCAAGTTTCTGTTTCGTTTGGTAAGTTTGAGAATGATTCACTGTCATGGGAGAAGT 180
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 329 AACTGCAAGTGTCTGTTTCGTTTGGTAAGTTTGAGAATGATTCACTTTCATGGGAGAAGT 388
Query 181 TTTCATCTTTTTCTCCAAACAAGTACTTGGAAGAAGTGGAGAAGTGTGCAACTGCTGGAT 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 389 TTTCATCTTTTTCTCCAAACAAGTATTTGGAAGAAGTGGAGAAGTGTGCAACTGCTGGAT 448
Query 241 CAGTAGCTCAGAAGAAGGCTTATTTCGAATCACACTACAAGAAGATCGCTGAGAGGAGAG 300
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 449 CAGTAGCTCAGAAGAAGGCTTATTTCGAATCACATTACAAGAAGATTGCTGAGAGGAGAG 508
Query 301 CTGATATTATCATGGAGCAGGAGAAACTATTGGAGAGAAATGCATCTTTCAGGCCGAGTG 360
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 509 CTGATATCATCATGGAGCAGGAGAAACTTTTGGAGAGGAATGCATCTTTCAGGCCGAATA 568
Query 361 TTCAGAACAGGGAAAAAACAGACGATAGTGACAATGACGAGTCAATGATGATTGAGTGTA 420
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 569 TTCAGAACCGGGAAAGAACAGACGATAGTGACAATGACGAGTCAATGATGATCGAGTTTA 628
Query 421 GTGCCGGTTATGGATCTAACGGTGAAAGTACTTCAGAAGAAGATAAGCTTGTGACTAG-C 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 629 GTACCGGTTATGGATCTAACGGTGAAAGTACTTCAGAAGAAGATAAGCTTGTGACC-GTC 687
Query 480 ATTG---CT-AA-TGA--GA--CATGTAACCATAAGCCTCTTGAAGAAACTATGGATTTC 530
|||| || || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 688 ATTGTTACTGAAGTGAATGAGACATGTAACCATAAGCCTCTTGAAGAAACTATGGATTTC 747
Query 531 GTGGAATGTCGAAGCTCGGTTGATGCCGGGGATGATCTGAGTACCCTGAAGTTGGAGGAG 590
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 748 AAGGAATGTCGAAGCTCGGTTGATACTGGGGATGATCTGAGTACCCTGAAGTTGGAGGAG 807
Query 591 AAACTTGAAGAGATTGTTCAAGTGGAGGATAAAGAGAAACTAGAAGAGGTTGTTTGTATG 650
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 808 AAACTTGAAGAGATTGTTCAAGTGGAGGATAAAGAGAAAGTAGAAGAGGTTATTTGTATG 867
Query 651 AAGGAAGAAGTAAAAGAAGATGTTCCATCAAAGGATACTGGAGAAATGAATGAAGCGCTA 710
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 868 AAGGAAGAAGTAAAAGAAGATGTTCCATCAAAGGATACTGGAGAAATGAGTGAAACACTA 927
Query 711 ATAAAGGAGACGAAGAAAGAGA-----C-----CGA-----GAAGACAGATAAAAATGTG 755
|| ||||||||||||||||||| | | | |||||| ||||||||||||
Sbjct 928 ATGAAGGAGACGAAGAAAGAGAAAGATCATAATCCAATCAAGAAGACTGATAAAAATGTG 987
Query 756 CGAACGAACCATATGAGAGCCTCTCCCAAGTCTAATCAGGCT-ACCAAGAAACCGGTAGC 814
||||| ||||||||||||||||||||||||||||| |||| | || |||||||||||| |
Sbjct 988 CGAACTAACCATATGAGAGCCTCTCCCAAGTCTAACCAGG-TGACGAAGAAACCGGTAAC 1046
Query 815 GAGCAAGATTGTAACAAGTACGAAAACTCAATCAAGCAAGGAGAAAAGCATGACAAAGGC 874
||||||| |||||| ||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 1047 GAGCAAGGTTGTAAGTGGTAGGAAAACTCAACCAAGCAAGGAAAAAAGCATGACAAAGGC 1106
Query 875 AACAAATAAAGCAGCATCACCTGTCTTAAAACCTCCAGC-TT--CAAC---AA---T--C 923
|||||||||||||||||||||||| ||||||||||||| || |||| || | |
Sbjct 1107 AACAAATAAAGCAGCATCACCTGTTTTAAAACCTCCAGGGTTTTCAACTCCAAGAGTGTC 1166
Query 924 -A-G-C---T-CAA---T--GT-CTA---CT--T-CTCGCTCTTCAGTAAAGAAAGAAAA 964
| | | | ||| | || | | || | ||||||||||||||||||| ||||
Sbjct 1167 TAAGTCAGCTTCAACAATAAGTTCAATGTCTACTTCTCGCTCTTCAGTAAAGAAGGAAAG 1226
Query 965 TGTCTCGGCTTTACCGAGAAAGAAACAAACCGCTCCAAAGTCATTGCA-AGTTCCTCTCA 1023
|||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 1227 TGTCTCAACTTTACTGAGAAAGAAACAAACCGCTCCAAAGTCATTGCCCATTTC-TCTCA 1285
Query 1024 ATGTGGATCAGTCT-TGCTCCGATCTTACTGCTGTTCTAACAACAAGAAAATCCTTGATC 1082
||||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1286 ATGTGGATCAGTCGGT-CTCCGATCCTACTGCTGTTCCAACAACAAGAAAATCGTTGATC 1344
Query 1083 ATGGAACGAATGGGAGATAAAGACATCGTTAGACGTGCTTTTAAGACTTTTCAGAAGAGT 1142
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1345 ATGGAACGAATGGGAGATAAAGACATCGTTAGACGTGCATTTAAGAGTTTTCAGAAGAGT 1404
Query 1143 TTCAACCAAATTAAACCTTCTGGTGATGAGCAAGAGCAAGATACAACTCCTAAGCAGGTT 1202
||| ||||||| ||| || ||| ||||| | | ||||||||| |||| |||||||||
Sbjct 1405 TTCGACCAAATGAAATCTACTGATGATG-G---G--CAAGATACAGCTCCAAAGCAGGTT 1458
Query 1203 CCTGCAAAGGCAACTGCTGTTCCGAGGTTAGGTACAACTGGTCAGAAAAATAG-CAGGCT 1261
| |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1459 CTTGCAAAGGCAACTGCTGTTCAGAGGTTAGGTACAACTGGTCAGAAAAAT-GTCAGGCT 1517
Query 1262 TGCAAAATCAGATGGCACAGAGAGAAAAGGTTCTAACTCTCACCGTTCTTCGTCTTTTGT 1321
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 1518 TGCAAAATCAGATGGCACGGAGAGAAAAGGTCCTAACTCTCACCGTTCTTCATCTGTTGT 1577
Query 1322 ATCAAAAAGCAACGGGGCAGCTGAGAAACAGAAGGA 1357
|||||||||||||||| |||| ||||||||||||||
Sbjct 1578 ATCAAAAAGCAACGGGACAGCCGAGAAACAGAAGGA 1613
Score = 503 bits (272), Expect = 3e-141
Identities = 350/388 (90%), Gaps = 4/388 (1%)
Strand=Plus/Plus
Query 1459 CCTTCCAGGCCTGGCGCAAGAGCTATGGAGAGGATACAGGCGATA-CCGAAGCATCAGGC 1517
||||| |||| |||| |||||||| | ||||||||||| | | |||| | ||||
Sbjct 1615 CCTTCTAGGCTTGGCACAAGAGCTGTAGAGAGGATACA-TTTACAGGCGAAACCGAAGGC 1673
Query 1518 AGAAGCAACCAATGCCAAAACTCGGAGGCAAAGTCTAAATCCTAAAGAAAAATCCATTCA 1577
|||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1674 AGAAGCAAGCAATGTCAAAACTCGGAGGCAAAGTCTAAATCCAAAAGAAAACCCCATTCA 1733
Query 1578 AGGACCTCTCCCAAAAGGCTATTCAGACAAAGTACTATGATGTAACAGACCTCATTTCAA 1637
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 1734 AGGACCTCTCCCAAAAGGCTATTCAGACAAAGTACTATGATGTAGCAGTCTTCATTTCAC 1793
Query 1638 GAACTTTGTTATGTAACAGATGAGC-ATTGTTTTTGTCTGATCTTCTGAAGTGCAAGGCT 1696
|||||||| |||||||||| ||| | ||||||||| ||||||||||||||| |||||||
Sbjct 1794 GAACTTTGATATGTAACAGGTGA-CTATTGTTTTTATCTGATCTTCTGAAGCACAAGGCT 1852
Query 1697 AAGGGCTCCACCAACATTTTTCAGCAAAAAGATCAAATATCTCCAAACTTTCAGATGATG 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1853 AAGGGCTCCACCAACATTTTTCAGCAAAAAGATCAAATATCTCCAAACTTTCAAATGATG 1912
Query 1757 TTTGTGATATAGAGAAGTCACCACGTTTGTGGACAAGTAAGTATTATACAGTCTTGTGTC 1816
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1913 TTTGTTATATAGAGAAGTCATTACGTTTGTGGAGAAGTAAGTATTATACAGTCTTGTGTC 1972
Query 1817 AATGTATGTGTATAGAGTCTATAGACTA 1844
|||||||||||||||||||| |||||||
Sbjct 1973 AATGTATGTGTATAGAGTCTGTAGACTA 2000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5