BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476139
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70140.1 | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26... 2747 0.0
> AT1G70140.1 | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26415230
REVERSE LENGTH=2465
Length=2465
Score = 2747 bits (1487), Expect = 0.0
Identities = 1757/1883 (93%), Gaps = 36/1883 (2%)
Strand=Plus/Plus
Query 335 CTAGAGAAGGTTTCACGCGGTTTGGTGGTGTGAAAGGTTTGATTCTTGATGAGAATGGTC 394
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTAGAGAAGGATTCACGAGGTTTGGTGGTGTGAAAGGTTTGATTCTTGATGAGAATGGTC 654
Query 395 TTGATGTGTTGTATTGGAGAAAGCTACAGAGTCAGAGAGAAAGAAGTGGAAGTTTCAAGA 454
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 655 TTGATGTGTTGTATTGGAGAAAGCTACAGAGTCAGAGAGAAAGAAGTGGGAGTTTCAGGA 714
Query 455 AACAGATCATCACCGGAGAAGAAGATGAC---AAAGAGGTGATTTATTACAAGAACAAGA 511
|||||||| |||||||||||||||| ||| ||||| || |||||||||||||||||||
Sbjct 715 AACAGATCGTCACCGGAGAAGAAGAAGACGAGAAAGAAGTTATTTATTACAAGAACAAGA 774
Query 512 AGAAAACAGAACCTGTTACAGAGATTCCTCTTCTTAGAGGAAGATCATCTACTTCTCATA 571
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 AGAAAACAGAGCCCGTTACAGAGATTCCTCTTCTTAGAGGAAGATCATCTACTTCTCACA 834
Query 572 GTGTAATCCATAACGAAGATCATCAGCCGCCTCCACCGCCAATTCCGGTGAAACAGAGTG 631
|||| |||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 835 GTGTTATCCATAACGAAGATCATCAGCCG---CCACCG-C-A----GGTGAAACAGAGTG 885
Query 632 AACCAACACCACCACCACCTCCGCCGTCAATTCCGGTGAAACAGAGTGCCCCAACGCCAC 691
|||||||||||||||| || || ||||||||| |||||||||||||||| |||||||||
Sbjct 886 AACCAACACCACCACCGCCACCACCGTCAATTGCGGTGAAACAGAGTGCACCAACGCCAT 945
Query 692 CGCCACCTCCTCCGATGAAGAAGGGTTCTTCACCATCGCCACCTCCACCTCCGCCGGTGA 751
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 946 CGCCACCTCCTCCGATTAAGAAGGGTTCTTCACCATCGCCACCGCCACCTCCACCGGTGA 1005
Query 752 AAAAGGTCGGAGCTTTATCATCATCAGCTTCGAAACCACCTCCTGCGCCGGTT-----A- 805
||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1006 AAAAGGTTGGAGCTTTATCATCATCAGCTTCGAAACCACCACCTGCGCCGGTTAGAGGAG 1065
Query 806 -AA--GGA-GAGAG--TTCGAAACAAGTAAAGCTAAAGCCTTTACATTGGGATAAAGTAA 859
|| ||| ||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1066 CAAGTGGAGGAGAGACTTCGAAACAAGTAAAGTTGAAGCCTTTACATTGGGATAAAGTAA 1125
Query 860 ACCCTGATTCTGATCATTCAATGGTTTGGGACAAAATCGATCGTGGATCATTCAGTTTCG 919
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 ACCCTGATTCCGATCATTCAATGGTTTGGGACAAAATCGATCGTGGATCATTCAGTTTCG 1185
Query 920 ATGGCGATTTAATGGAAGCTCTGTTTGGATACGTTGCCGTGGGGAAGAAATCACCAGAAC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATGGCGATTTAATGGAAGCTCTGTTTGGATACGTTGCCGTGGGGAAGAAATCACCAGAAC 1245
Query 980 ACGGCGATGATAAAAACCCTAAATCAACGCAAATCTTCATACTTGATCCGAGAAAGTCTC 1039
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1246 AAGGCGATGAGAAAAACCCTAAATCAACGCAAATATTCATACTTGATCCGAGAAAGTCTC 1305
Query 1040 AAAACACAGCGATTGTGCTTAAATCGTTAGGTATGACACGAGAAGAGCTTGTTGAAGCAC 1099
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||
Sbjct 1306 AAAACACAGCGATTGTGCTCAAATCATTAGGTATGACACGTGAAGAGCTTGTTGAATCAC 1365
Query 1100 TCGTAGAAGGAAACGATTTCGTGCCAGACACGCTTGAGAGGTTAGCTAGAATAGCCCCGA 1159
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1366 TCATAGAAGGAAACGATTTCGTGCCAGACACTCTTGAGAGGTTAGCTAGAATAGCTCCAA 1425
Query 1160 CTAAAGAAGAACAATCAGCGATTCTTGAATTCGAAGGCGACACGGCAAAACTCGCTGATG 1219
| ||||||||||||||||| |||||||||||||| || ||||||||||| || |||||||
Sbjct 1426 CGAAAGAAGAACAATCAGCCATTCTTGAATTCGACGGTGACACGGCAAAGCTTGCTGATG 1485
Query 1220 CGGA-ATTGTTTTTGTTTCATCTTCTTAAATCCGTGCCAACCGCGTTTACGAGACTAAAC 1278
|||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 CGGAGAC-GTTTCTGTTTCATCTTCTTAAATCCGTGCCAACCGCGTTTACGAGACTAAAC 1544
Query 1279 GCGTTTCTCTTTAGGGCTAATTATTATCCAGAGATGTCTCATCATGGAAAATGTTTACAA 1338
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 1545 GCGTTTCTCTTTAGGGCTAATTATTATCCAGAGATGGCTCATCATAGCAAATGTTTACAA 1604
Query 1339 ACGTTGGATTTGGCTTGTAAAGAGCTGAGATCTCGTGGCTTGTTTGTGAAGCTTTTGGAG 1398
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 ACGTTGGATTTAGCTTGTAAAGAGCTGAGATCTCGTGGCTTGTTTGTGAAGCTTTTGGAG 1664
Query 1399 GCTATACTTAAAGCTGGAAACAGAATGAATGCGGGTACCGCGAGAGGAAATGCTCAAGCG 1458
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1665 GCAATACTTAAAGCTGGAAACAGAATGAACGCGGGTACCGCGAGAGGAAACGCTCAAGCG 1724
Query 1459 TTTAATCTAACCGCGCTTTTGAAACTTTCGGATGTTAAAAGTGTTGATGGGAAGACTACT 1518
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 1725 TTTAATCTAACCGCGCTTTTGAAGCTTTCGGATGTTAAAAGCGTTGATGGGAAGACTTCT 1784
Query 1519 TTGCTTAACTTTGTGGTGGAGGAAGTTGTTAGATCGGAAGGAAAACGTTGTGTTTTGAAT 1578
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1785 TTGCTTAACTTTGTAGTGGAGGAAGTTGTTAGATCGGAAGGAAAACGTTGTGTTATGAAT 1844
Query 1579 AGAAGAAGCCATAGCTTAACACGAAGCGGTAGTAGTAACAACAATGGTGGTAATAGTC-- 1636
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1845 AGAAGAAGCCATAGCTTAACACGAAGCGGTAGTAGTAACTACAATGGTGGTAATAGTAGT 1904
Query 1637 CT-CAGGTTATGTCGAAAGAAGAGCAAGAGAAAGAGTATTTGAAGCTTGGTTTACCAATT 1695
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1905 CTTCAGGTTATGTCGAAAGAAGAGCAAGAGAAAGAGTACTTGAAGCTTGGTTTACCAGTT 1964
Query 1696 GTTGGAGGATTGAGCTCTGAGTTTTCAAACGTCAAGAAAGCTGCTAGTGTAGACTATGAC 1755
||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 1965 GTTGGTGGATTGAGCTCTGAGTTTTCAAACGTGAAGAAAGCTGCTTGTGTGGACTATGAA 2024
Query 1756 ACGGTTGTTGCAACTTGCTCTGCTCTTGCGGTTAGAGCGAAAGACGCAAAAACGGTGATT 1815
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 2025 ACGGTTGTTGCAACTTGTTCTGCTCTTGCGGTTAGAGCGAAAGATGCGAAAACGGTGATT 2084
Query 1816 GCAGAATGTGAAGATGGAG--G-AGGGAGGTTTGTGAAGAA-GATGATGTTGTTTCTTGA 1871
| ||||||||||||||||| | ||||||||||||||| || ||||||| |||||||||
Sbjct 2085 GGAGAATGTGAAGATGGAGAAGGAGGGAGGTTTGTGAA-AACGATGATGACGTTTCTTGA 2143
Query 1872 TTCGGTAGAGGAAGAGGTGAAAAT-GTCGAAAGATGAAGAGAGGAAAGTAATGGAGCTTG 1930
|||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||
Sbjct 2144 TTCGGTAGAGGAAGAGGTGAAAATAG-CGAAAGGTGAAGAGAGGAAAGTGATGGAGCTTG 2202
Query 1931 TGAAACGTACAACGGATTATTATCAAGCAGGAGCTGTTACAAAGGGGAAGAATCCACTTC 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 TGAAACGTACAACGGATTATTATCAAGCAGGAGCTGTTACAAAGGGGAAGAATCCACTTC 2262
Query 1991 ATTTATTTGTTATAGTTAGAGATTTTCTTGCCATGGTTGATAAAGTATGCTTAGAGATTA 2050
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2263 ATTTGTTTGTTATCGTTAGAGATTTTCTTGCCATGGTTGATAAAGTTTGCTTAGATATTA 2322
Query 2051 TGCGGAATATGCAGAGGAGAAAGATTGGGAGTCCGGTATCGCCTTCTTCGCAGCGGAATG 2110
|| | |||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||
Sbjct 2323 TGAGAAATATGCAGAGGAGGAAGGTTGGTAGTCCGATATCGCCTTCTTCGCAGCGGAATG 2382
Query 2111 CCGTGAAATTCCCAGTTTTGCCTCCGAATTTCATGTCGGTCAGAGCCTGGAGTGATTCAG 2170
| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 2383 CGGTGAAATTCCCGGTTTTGCCTCCGAATTTCATGTCGGACAGAGCTTGGAGTGATTCTG 2442
Query 2171 GTGGGTCGGATTCCGATATGTGA 2193
||||||||||||| |||||||||
Sbjct 2443 GTGGGTCGGATTCTGATATGTGA 2465
Score = 377 bits (204), Expect = 2e-103
Identities = 249/270 (92%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 1 TCTCTATATCTCTCTAAATGAGCTAGATCGTTAATGGCTGCCATGTTTAATCATCCATGG 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 150 TCTCTCTATCTCTCTAAATGAGCTAAATCGTTAATGGCTGCCATGTTTAATCATCCATGG 209
Query 61 CCTCATTATTTAACCCTAATTTTCTTCTTCTTCATAGTCGTTTTACCATTCCATTCATTT 120
||| | ||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||
Sbjct 210 CCT-A--ATTTAACCCTAATTTACTTCTTCTTCATCGTCGTTTTACCATTCCAATCACTT 266
Query 121 TCTCAATCTGATTCTCCTCAAAATATCGAAACTTTCTTCCCCATCTCCTCACTCTCCCCT 180
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 267 TCTCAATTTGATTCTCCTCAAAATATCGAAACTTTCTTCCCCATCTCTTCACTCTCCCCT 326
Query 181 GTTCCACCACCGCTGCTTCCACCGTCGTCAAACCCGTCTCCGCCGTCAAATAATTCATCT 240
|||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 327 GTTCCACCACCGCTTCTTCCACCTTCGTCAAACCCATCTCCGCCGTCGAATAATTCATCA 386
Query 241 TCT--G-ATAGAAAAACAATCACAAAAGCT 267
||| | ||| |||||||||||| ||||||
Sbjct 387 TCTTCGGATAAAAAAACAATCACCAAAGCT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108784581015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5