BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476140
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2976 0.0
> AT1G70160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G27020.1);
Has 108 Blast hits to 108 proteins in 20 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89;
Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). |
chr1:26419949-26422529 FORWARD LENGTH=1966
Length=1966
Score = 2976 bits (1611), Expect = 0.0
Identities = 1864/1979 (94%), Gaps = 46/1979 (2%)
Strand=Plus/Plus
Query 1 GTCTATTTCTTCCACATCCAAAACT-A---AATATTTTATCTCCCACAAAGTCCAATTTT 56
||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 4 GTCGATTTCTTCCACATCCAAAACTAACTCAATATTTTATCTCCCCCAAAGTCCAATTTT 63
Query 57 CCaaaaaaaaTCCAATACACAGAGAGAGAGaaaaaaaaaTAACTGAAACATCCCAAATGG 116
|| ||||||||||| | ||| | |||||| |||||| ||||||||||||||||||||
Sbjct 64 CC--AAAAAATCCAA-A-ACACACAGAGAG---AAAAAA-AACTGAAACATCCCAAATGG 115
Query 117 ---ATCATCTTCAACCATAACAACACGAAACCC-TCTTCTCCAAAATCCCCAAAATCTTG 172
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 116 ATCATCATCTTCAACCATAACAACACGAAACCCTTCTTCTCCAAAATCCCCAAAACCTTG 175
Query 173 AAACAAAGTCTCAAAA--TCA--TC--CGATCCCGAATGTCTCAAAACTCATCATTCTTC 226
|||||||||||||||| ||| || ||| |||||||||||| ||| ||||| |||||
Sbjct 176 AAACAAAGTCTCAAAATTTCACTTCGTGGAT-CCGAATGTCTCAGAACCCATCACTCTTC 234
Query 227 TTCCTCTTATGTCTTCTTCTAGGGTTAGGTTTTTGCGTTGACCTAGGTCAAT-CCTTAAA 285
||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 235 TTCCTCTTATG------TCTAGGGTTAGGTTTTTGCGTTGACCTGGGTCAATCCCTGAAA 288
Query 286 GCTTCCTTTTAGCGTTAACGATGTTCTTCCGATGCTACCTCGCCAAGTCTCGTGGCCTGT 345
| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 289 G-TTCCTTTCAGCGTTAACGATGTTCTTCCGATGCTACCTCGTCAAGTCTCATGGCCTGT 347
Query 346 TTTGAACAGTTTCCACAACGCTGTGGATTTGTTACCGGTCTTTATCGGGTCTGTTACTCC 405
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 348 TTTGAACAGTTTCCACAACGCTGTGGATTTGTTGCCGGTTTTTATTGGGTCAGTTACTCC 407
Query 406 TAATAATGTGTCTATTGAGTGGAAAGGTGCTTGCTTTAATGGTAATGAAGCTCGTCTCGA 465
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 408 TAATAATGTATCTATTGAGTGGAAAGGTGCTTGCTTTAATGGTAATGAAGCTCGTCTTGA 467
Query 466 TATCACCGGTAGTGATCGTGACGTCCCTGGACTCGGTGGTGGTGTTCTTCATCTCAAAAC 525
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 468 TATCACCGGTAGTGATCGTGACGTCCCTGGACTTGGTGGTGGTGTTCTTCATCTCAAAAC 527
Query 526 GTCCAAGGCACATAGCTTGACATGTATGGATCTTTATGTGTTTGCAACGCCTTACAGGAT 585
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 528 ATCCAAGGCACATAGCTTGACATGTATGGATCTTTATGTGTTTGCAACGCCATACAGGAT 587
Query 586 CACTTGGGACTACTATTTCTCTGCTCGAGATCATACTTTGAACTTTGATTCTTGGGAAGA 645
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 588 CACTTGGGACTACTATTTCTCTGCTAGAGATCATACTTTGAACTTTGATTCTTGGGAAGA 647
Query 646 GAAAGCTGAATTGGAATATGTGAAGGAGCATGGAGTTTCAGTGTTTCTAATGCCATCAGG 705
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 648 GAAAGCTGAATTGGAATATGTGAAGGAGCATGGCGTTTCAGTGTTTCTAATGCCATCAGG 707
Query 706 AATGCTTGGGACGTTGCTTTCGATGATTGATGTGTTACCTCTTTTCTCCAATACTGCTTG 765
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 708 AATGCTTGGGACGTTGCTATCTTTGATTGATGTGTTACCTCTTTTCTCCAATACTGCTTG 767
Query 766 GGGACAGAATGCGAATTTGGCGTTCTTGACGAAACATATGGGTGCTACGTTTGAGAAACG 825
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 768 GGGACAGAATGCGAATTTGGCGTTCTTGACGAAACATATGGGTGCTACCTTTGAGAAACG 827
Query 826 GTCTCAACCTTGGCGGTCAATGATTAATCCGGAAGATGTGCATTCCGGCGATTTCTTGGC 885
||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||
Sbjct 828 GTCTCAACCTTGGCGGTCAATGATTAACCCAGAAGATGTGCATTCTGGTGATTTCTTGGC 887
Query 886 GGTGTCAAAGATTCGAGGTAGATGGGGTGGTTTTGAGACGTTAGAGAAATGGGTGACTGG 945
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GGTGTCGAAGATTCGAGGTAGATGGGGTGGTTTTGAGACGTTAGAGAAATGGGTGACTGG 947
Query 946 GGCTTTTGCTGGTCATACTGCTGTTTGTTTGAAGGATGATTTGGGGAATCTTTGGGTTGG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GGCTTTTGCTGGTCATACTGCTGTTTGTTTGAAGGATGATTTGGGGAATCTTTGGGTTGG 1007
Query 1006 TGAATCGGGACATGAGAACGAAAAGGGTGAAGAAATCATTGTTGTGATTCCTTGGGATGA 1065
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1008 TGAATCAGGACATGAGAACGAAAAGGGTGAAGAAATCATTGTTGTGATCCCTTGGGATGA 1067
Query 1066 ATGGTGGGATCTGACGTTGAAGGATAATTCAAATCCTCAAGTTGCTTTGCTTCCTCTCCA 1125
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1068 ATGGTGGGAGCTGACTTTGAAGGATAATTCAAATCCTCAAGTAGCTTTGCTTCCTCTACA 1127
Query 1126 TCCCAATATCCGGGCAAAGTTCAACAATACTGCTGCGTGGGAATATGCCCGGAGCATGTT 1185
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1128 TCCTGATATCCGGGCAAAGTTCAACAATACTGCTGCGTGGGAATATGCACGGAGTATGTT 1187
Query 1186 GGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAA 1247
Query 1246 CTACCCACCTCCCCTTGATGCTCACTTGGTTATTTCTGTCATGTCTATGTGGACTCGTGT 1305
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CTACCCCCCTCCCCTTGATGCTCACTTGGTTATTTCTGTCATGTCTATGTGGACTCGTGT 1307
Query 1306 ACAACCCGCATATGCTGCAAATATGTGGAACGAGGCACTGAATAAACGACTCGGTACTGA 1365
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1308 ACAACCTGCATATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGA 1367
Query 1366 GGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCATTCGATGA 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1368 GGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCATTTGATGA 1427
Query 1426 ATTACTCACCATCCCTGAACAGGATGAGTGGGTTTATAGTGACGGGAAATCAACAACATG 1485
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1428 GTTACTCACCATCCCTGAACAGGATGAGTGGGTTTATAGCGACGGTAAATCGACAACATG 1487
Query 1486 TGTTGCTTTCATCCTTGCAATGTACAAAGCCGCTGGTGTATTCGGCCCTCTCGCTGATCA 1545
|||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||
Sbjct 1488 TGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATATTCGACCCTCTCGCTGATCA 1547
Query 1546 CATTCAAGTCACTGAATTCACTATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAA 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CATTCAAGTCACTGAATTCACTATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAA 1607
Query 1606 CCAGACTCGGCTACCGAGTTGGTGCAACACAGAGGAAGAGAAGCTTGACTTCTGTCAGAT 1665
|||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 1608 CCAGACTCGGTTACCGAGTTGGTGCAACACCGAGGAAGGGAAGCTTGACTTCTGTCAAAT 1667
Query 1666 TCTAGGTGAATACAGAATGGAGTTACCTGGTTATAACACCATTGACCCATATCCAAACAT 1725
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1668 TCTAGGTGAATACAGAATGGAGTTACCTGGTTATAACACCATTTACCCATATCCAAACAT 1727
Query 1726 GAACCAGAATTGCCCTTCTTTGCCTCCTAATTATGAGAGGCCTTCTAAGTGTTAGCAAAA 1785
|||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1728 GAACCAGAATTGTCCTTCTTTACCTCCTAATTATGAGAGACCTTCTAAGTGTTAGCAAAG 1787
Query 1786 TTATTAATTAACATGTATGTCT--CTCTCTC--T--GTCTGTTTGTGTTTGTATACTTTT 1839
||| | ||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 1788 TTA--A-TTAACATGTATGTCTATCTCTCTCCCTCTGTCTGTTTGTGTTTGTATACTTTT 1844
Query 1840 GGTTTAT-TATTTAAGTTTACCCTTTTGGTTAGAGGGAAAGTAAACCACGTTTTAAGTAC 1898
||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1845 GGTTTATATATTTAAGCTTACCCTTTTAGTTAGAGGGAAAGTAAACCACGTTTTTAGTAC 1904
Query 1899 AATCTTGTGTGAATGTGAATATATTATATGATGCTCTTATCATATTCAATGTTATCTCC 1957
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 AATCTTC-GTG--TG--AATATATTATATGATGCTCTTATCATATTCAATGTTATCTCC 1958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96937252395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5