BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476141
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70170.1 | Symbols: MMP | matrix metalloproteinase | chr1:26... 2285 0.0
AT1G24140.1 | Symbols: | Matrixin family protein | chr1:853604... 460 1e-128
> AT1G70170.1 | Symbols: MMP | matrix metalloproteinase | chr1:26423874-26425356
FORWARD LENGTH=1483
Length=1483
Score = 2285 bits (1237), Expect = 0.0
Identities = 1394/1469 (95%), Gaps = 14/1469 (1%)
Strand=Plus/Plus
Query 21 tctctctctctctctctcaaattctctcCTAAAATCCTAAATATTACCTTCTCCATATGT 80
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 27 TCTCTCT-TCTCTCTCTCAAATTCTCTCCTAAAATCCTAAATATTACCTTCTCCATTTGT 85
Query 81 TTCTTTTCTTCTTTTTTGGGTGGCTACCTATAATCCGAAAACCACCATGAGGTTTTGTGT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 TTCTTTTCTTCTTTTTTGGGTGGCTACCTATAATCCGAAAACCACCATGAGGTTTTGTGT 145
Query 141 TTTCGGGTTTTTATCGCTTTTCTTGATTGTTTCTCCTGCCTCCGCCTGGTTCTTCCCTAA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 TTTCGGGTTTTTATCGCTTTTCTTGATTGTTTCTCCTGCCTCCGCCTGGTTCTTCCCTAA 205
Query 201 CTCCACCGCGACACCACCGTCTCTACGTAACACTACACGTGTTTTCTGGGACGCTTTCTC 260
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CTCCACCGCGGTACCACCGTCTCTACGTAACACTACACGTGTTTTCTGGGACGCTTTCTC 265
Query 261 CAATTTTACCGGTTGTCACCACGGCCAAAACGTTGAAGGTCTCTACCGCATCAAAAAATA 320
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 266 CAATTTCACCGGTTGTCACCACGGCCAAAACGTTGATGGTCTCTACCGTATCAAAAAATA 325
Query 321 CTTCCAACGTTTTGGTTACATCCCTGAAACGTTTTCAGGAAATTTCACCGATGATTTTGA 380
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 326 CTTCCAACGTTTTGGTTACATCCCTGAAACGTTTTCGGGAAATTTCACCGATGATTTTGA 385
Query 381 TGATATCCTCAAAACAGCTGTTGAATTGTATCAGAGGAATTTCAAGCTTAACGTTACGGG 440
||||||||||||| | ||||| ||||||||||||| ||||||||| ||||||||||| ||
Sbjct 386 TGATATCCTCAAAGCCGCTGTCGAATTGTATCAGACGAATTTCAATCTTAACGTTACCGG 445
Query 441 AGAGCTCGATGCTATGACCATTAAACACATCGTGATCCCGCGTTGTGGTAATCCCGACGT 500
||||| ||||| | |||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 446 TGAGCTTGATGCGCTTACCATTCAACACATCGTGATCCCGCGTTGCGGTAATCCTGACGT 505
Query 501 GGTCAACGGTACTTCTTTGATGCATGGCGGGAGAAGAAAGACCTTCGAGGTCAACTTCTC 560
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGTCAACGGTACTTCGTTGATGCATGGCGGGAGAAGAAAGACCTTCGAGGTCAACTTCTC 565
Query 561 CCGCACGCATTTGCACGCGGTTAAACGCTACACGTTGTTCCCAGGCGAGCCACGGTGGCC 620
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 566 CCGCACGCATTTGCACGCGGTTAAACGCTACACGTTATTCCCAGGCGAGCCACGGTGGCC 625
Query 621 AAGAAACCGCCGTGACTTGACCTACGCGTTTGACCCGAAAAACCCCTTGACAGAAGAGGT 680
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 626 GAGAAACCGCCGTGACTTGACCTACGCGTTCGACCCGAAAAACCCGTTGACGGAAGAGGT 685
Query 681 CAAGAGCGTGTTCTCACGCGCTTTCGGCCGTTGGTCGGACGTCACCGCGTTGAACTTCAC 740
|||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 686 CAAGAGCGTGTTCTCACGCGCTTTTGGTCGTTGGTCTGACGTCACCGCGTTAAACTTCAC 745
Query 741 GCTTTCCGACTCTTTCTCGACGTCCGACATCACAATCGGATTCTACACCGGCGATCACGG 800
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 746 TCTTTCCGAGTCTTTCTCGACGTCTGACATCACAATCGGATTCTACACCGGCGACCATGG 805
Query 801 TGACGGCGAGCCTTTCGACGGCGTTTTGGGAACCTTAGCTCACGCTTTCTCTCCTCCTAG 860
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 806 TGACGGAGAGCCTTTCGACGGCGTTTTGGGAACATTAGCTCACGCTTTCTCTCCTCCCAG 865
Query 861 CGGGAAATTCCACCTAGACGCAGACGAGAACTGGGTGGTCTCCGGAGACCTAGACAGTTT 920
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 866 CGGGAAATTCCACCTAGACGCAGATGAGAACTGGGTGGTCTCCGGAGACCTAGACAGTTT 925
Query 921 CCTCTCCGTAACTGCTGCGGTTGATCTTGAATCGGTAGCGGTTCACGAGATCGGTCATCT 980
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 926 CCTCTCCGTAACTGCTGCGGTTGATCTTGAATCAGTGGCGGTTCACGAGATCGGTCATCT 985
Query 981 TCTCGGTTTAGGACATTCGTCAGTTGAAGAATCCATCATGTATCCAACGATCACGACGGG 1040
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 986 TCTAGGTTTAGGACATTCTTCAGTTGAGGAATCCATCATGTATCCAACGATCACGACAGG 1045
Query 1041 GAAACGTAAGGTTGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGCGC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1046 GAAACGTAAGGTTGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGTGC 1105
Query 1101 GAACCCTAACTTCAACGGCACAACATCTCCACCGTCGACCACTAGACACCAGCGAGACAC 1160
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1106 AAACCCTAACTTCAACGGCACAACATCTCCACCGTCGACCACTAAACACCAGCGAGACAC 1165
Query 1161 TGGTGGCTTCAGTGCCGCCTGGAGAATCGACGGTTCATCGAGATCGACAATTGTCAGTCT 1220
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1166 TGGTGGCTTCAGTGCCGCCTGGAGAATCGACGGTTCATCGAGATCAACAATTGTTAGTCT 1225
Query 1221 CTTGTTGTCAACCGTCGGATTGGTCTTGTGGTTCTTACCGTAGATAAAGttttttta--c 1278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1226 CTTGTTGTCAACCGTCGGATTGGTCTTGTGGTTCTTACCGTAGATAAAGTTTTTTTTTTC 1285
Query 1279 ttacttgaattcttttagtttgatttaatttacctcatatcttattctttttttaTTGAA 1338
|||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1286 TTACTTCAATTCTTTTAGTTTGATTTA-----CCTCATATCTTATTCTTTTTTTATTAAA 1340
Query 1339 GGATGGGGATATATATACACACATATTCAGACATTGGTTCCTTTAATTTCTATAGTTTTC 1398
||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||
Sbjct 1341 GGATGGGGATATATATACACACATATTTAGACATTGGTTCCTTT--T--CTACAGTTTTT 1396
Query 1399 GATTTCACATATACTACTTGTATATAAATTACTTTATGTCCTATATACCAATGTTTGATC 1458
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1397 GATTTCACATATACTACTTGTATATAAATTACTTTATGTCCTATA--CCTATGTTTGATT 1454
Query 1459 TCGTGTTTTACATTTTCTTAGCTTTGTTT 1487
||||||| ||||||||||||||||| |||
Sbjct 1455 TCGTGTTATACATTTTCTTAGCTTTCTTT 1483
> AT1G24140.1 | Symbols: | Matrixin family protein | chr1:8536045-8537387
REVERSE LENGTH=1343
Length=1343
Score = 460 bits (249), Expect = 1e-128
Identities = 753/988 (76%), Gaps = 68/988 (7%)
Strand=Plus/Plus
Query 246 CTGGGACGCTTTCTCCAATTTTACCGGTTGTCAC-CACGGCCAA-AACGT-TGAAGGTCT 302
|||| || | |||| ||||| || || |||||| | ||| ||| || || || |||||
Sbjct 228 CTGGAACTCATTCTTGAATTTCACTGGATGTCACGC-CGG-CAAGAA-GTACGATGGTCT 284
Query 303 CTA-CCGCATCAAAAAATACTTCCAACGTTTTGGTTACATC-CCTGAAACGT--T-T-TC 356
||| || ||||| |||| || |||| |||||| |||||| || ||||| | | | ||
Sbjct 285 CTATATGC-TCAAACAATATTTTCAACATTTTGGCTACATCACC-GAAAC-TAATCTCTC 341
Query 357 AGGAAATTTCACCGATGATTTTGATGATATCCTCAA-AACAGCTGTTGAATTGTATCAGA 415
||||| ||||| || || || || ||||| ||||| ||| || || ||| |||| ||||
Sbjct 342 CGGAAACTTCACTGACGACTTCGACGATATTCTCAAGAAC-GCCGTCGAAATGTACCAGA 400
Query 416 GGAATTTCAAGCTTAACGTTACGGGAG-AGCTCGATGCTATGAC-CATTAAACACATCGT 473
| || ||| |||| ||||| || |||| | ||||| | | || | | |||||| | ||
Sbjct 401 GAAACTTCCAGCTAAACGTCACCGGAGTA-CTCGACGAGCTCACTC-TCAAACACGTTGT 458
Query 474 GATCCCGCGTTGTGGTAATCCCGACGTGGTCAACGGTACTTC-TTTGATGCATGGCGGGA 532
|||||| ||||| || || |||||||| |||||||| || || | |||||| |||| |
Sbjct 459 GATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAACT-ATGCATAGCGGTA 517
Query 533 GAAGAAAGACCTTCGAGGTCAACTTCTCC---C---G-C-ACGCATTTGCACGCGGTTAA 584
| |||| ||||||||||| |||| || | | | |||| || ||||| |||||
Sbjct 518 G--GAAA-ACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGC--TTCCACGCCGTTAA 572
Query 585 ACGCTACACGTTGTTCCCAGGCGAGCCACGGTGGCCAAGAAACCGCCGTGACT-TGACCT 643
|| |||| | || ||||| || |||||||||||||| ||||| || ||||| | | ||||
Sbjct 573 ACACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTGA-TCTAACCT 631
Query 644 ACGCGTTT-GACCCGAAAAACCCCTTGACAGAAGAGGTCAAGAGCGTGTTCTCACGCGCT 702
|||| ||| |||||| |||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 632 ACGC-TTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCTCACGCGCT 690
Query 703 TTCGGC-CGTTGGTCGGACGTCAC-CGCGTTGAAC-TTCAC--GCTTTCCGACTCTTTCT 757
||| | |||||| ||| || || | | | ||| ||||| || | || || ||
Sbjct 691 TTCA-CTCGTTGGGAGGAGGTGACTC-CACT-AACGTTCACACGCGTGGAGAGG-TT-CT 745
Query 758 CGACGTCCGACATCA-CAATCGGATTCTACACCGGCGATCACGGTGACGGCGAGCCTTTC 816
|||| || ||||||| || ||||||||||| |||| || ||||| ||||| || || |||
Sbjct 746 CGACCTCTGACATCAGCA-TCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGTTC 804
Query 817 GACGGCGTTTTGGGAAC-CTTAGCTCACGCTTTCTCTCCTCCTAGCGGGAAA-TTCCACC 874
|||||| || |||| || ||| || || ||||| || || | ||||| | ||||| |
Sbjct 805 GACGGCCCAATGAGAACGCT-AGCACATGCGTTCTCGCCCCCGA-CGGGACACTTCCATC 862
Query 875 TAGACGCAGACGAGAACTGGGTGGTCTCCGGAGACCTAGAC-A-G-TTTCCTCTCCGTAA 931
|||||| ||| ||||||||| | |||||||| || || | | | ||| |||||||
Sbjct 863 TAGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGTGT 922
Query 932 CTGCTGCGGTTGATCTTGAATCGGTAGCGGTTCACGAGATCGGTCATCTTCTCGGTTTAG 991
||| || |||||||| |||||||| || ||||||||||| || |||||||| || ||||
Sbjct 923 CTGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTAG 982
Query 992 GACATTCGTCAGTTGAAGAATCCATCATGTATCCAACGATCACGACGGGGAAACGTAAGG 1051
| ||||| || || |||| || |||||||||||||| |||| |||||| | ||||| |
Sbjct 983 GCCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAAG 1042
Query 1052 TTGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGCGCGAACCCTAACT 1111
|||| ||||| | ||||||||||||||| ||||||| |||||||| ||||| |||||||
Sbjct 1043 TTGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAACT 1102
Query 1112 TCAACGGCACAACATCTCCACCGTCGACCACT-AGACACCAGCGAGACACTGGTGGCTTC 1170
|||| || | | ||||||||| || ||||| | ||| | ||||||||||| | |||
Sbjct 1103 TCAATGGTTCTAGATCTCCACCACCGTCCACTCA-ACA--A-CGAGACACTGGCGA-TTC 1157
Query 1171 AG-TGCCGCCTGG-AGAATCGACGGTTC 1196
| ||| ||||| |||| |||||||||
Sbjct 1158 TGGTGCT-CCTGGTAGAAGCGACGGTTC 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5