BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476144
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70190.1 | Symbols: | Ribosomal protein L7/L12, oligomerisa... 1053 0.0
> AT1G70190.1 | Symbols: | Ribosomal protein L7/L12, oligomerisation;Ribosomal
protein L7/L12, C-terminal/adaptor protein
ClpS-like | chr1:26430543-26431578 FORWARD LENGTH=1036
Length=1036
Score = 1053 bits (570), Expect = 0.0
Identities = 763/846 (90%), Gaps = 54/846 (6%)
Strand=Plus/Plus
Query 1 AGTGCTTAAAGATGAGCTTAGTTCTCAGATTGAGGCAACATTTATCTCAAACCTCCTCCA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 63 AGTGCTTAAAGATGAGCTTAGTTCTCAGATTCAGGCAACATTTATCTCAAACCTCATCCA 122
Query 61 GATTATCAC-TCATTCCCCGAATCGGCGGTTACCGGAGTTATACCCAACCAGCgaagatt 119
||||||||| || || | ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 123 GATTATCACTTC-TTTCTCGAATCGGCGGTTACCGGAGTTACACCCAACCGGCGAAGATT 181
Query 120 gaagatgaagaagaagaagaagaaTTCGATCAGAGAAAGCTCCCAACAGATTACGATCCA 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GAAGAT---GAAGAAGAAGAAGAATTCGATCAGAGAAAGCTCCCAACAGATTACGATCCA 238
Query 180 GCTACGTTTGATCCAACAGAACATCGAAGTCCACCAACGGATCGTGTATTCAGACTCGTA 239
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCTACTTTTGATCCAACAGAGCATCGAAGTCCACCAACGGATCGTGTATTCAGACTCGTA 298
Query 240 GACGAGATCTCATCTCTAACATTATTAGAAATCTCCGAGCTTGGTGAGATTATAATGAAG 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 GACGAGATCTCATCTCTAACATTATTAGAAATCTCCGAGCTTGGTTCGATTATAATGAAG 358
Query 300 AAGAAAGGTATGACGGAGCTACCAACAGTCGCAGTTATGAAACCTGGAGCtggtggtggt 359
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 359 AAGAAAGGTATGACGGAGTTACCAACAGTCGCTGTTATGAAACCTGGAGCTGGTGGTGGT 418
Query 360 g--g-tg--g-tgg-g--------atggtgagtcaaagtggtgtgagtgAAGAAGCTAAA 404
| | || | ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTGGTGTTGGTGGTGGTGGTGGGATGGTGAGTCAAAGTGGTGTGAGTGAAGAAGCTAAA 478
Query 405 GTGGAGAAGACAGTGTTTGAGATAAAGTTGGAGTCTTTTGAAGCATCTGCTAAGATTAAG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGGAGAAGACAGTGTTTGAGATAAAGTTGGAGTCTTTTGAAGCATCTGCTAAGATTAAG 538
Query 465 ATTATTAAAGAGTTAAGGAGTTTTACTGATTTGGGTTTGAAAGAAGCTAAAGCTTTGGTG 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATTATTAAAGAGTTAAGGAGTTTTACTGATTTGGGTTTGAAAGAAGCTAAAGCTTTGGTT 598
Query 525 GAGAAGACTCCTGCCATTTTGAAAGCTGGTTTGTCTAAAGAAGAAGGTGAGAAGATTCTT 584
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGAAGACTCCTGCTATTTTGAAAGCTGGTTTGTCTAAAGAAGAAGGTGAGAAGATTCTT 658
Query 585 GAGAAGTTGAAAGCACTTGGTGCTAAAGTTGTTTTGGAGTGATCATCATCAAGGTTGGAT 644
|||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||
Sbjct 659 GAGAAGTTGAAAGCACTTGGTGCTAAAGTTGTGTTGGAGTGATCATC-TAAAGGTTCGAT 717
Query 645 TTTTTCTTCTTTTGTTCCATCTATGAGCTCAAGATACAA-G-T--T---G-TT--ACA-- 692
|||| || |||||||||| | |||||||||||||||||| | | | | || | |
Sbjct 718 TTTT-CTGCTTTTGTTCCGTGTATGAGCTCAAGATACAAAGCTGATTAAGGTTTTATAAA 776
Query 693 ----C-T--T-GCT-C--TT--TCTTTCT--C--ATTGCTAAATTGGGTTT-T-GAGAGA 733
| | | | | | || ||||||| | ||||||||||||| ||| | ||||||
Sbjct 777 GGGTCATAGTTGTTACACTTGCTCTTTCTTTCTCATTGCTAAATTGGTTTTGTTGAGAGA 836
Query 734 TGAATCTTTGCTAGTTCAAGA-TGTATTGCAGAATAATACAAGTGTAGACTTTGTTTTAG 792
|| ||||||| |||||||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 837 TGGATCTTTGTTAGTTCAAGAATGTATCGCTGAATAATAGAAGTGTAGACTTTGTTTTAG 896
Query 793 TTTGTT 798
| ||||
Sbjct 897 TGTGTT 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5