BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476146

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70220.1 | Symbols:  | RNA-processing, Lsm domain | chr1:264...   497    4e-140


> AT1G70220.1 | Symbols:  | RNA-processing, Lsm domain | chr1:26446136-26448009 
REVERSE LENGTH=869
Length=869

 Score =  497 bits (269),  Expect = 4e-140
 Identities = 358/398 (90%), Gaps = 18/398 (5%)
 Strand=Plus/Plus

Query  184  AACGTCGAGAAAATTGGTTTTGGTGTTACCTCAGAAGCGCAGAAGATCTTTGACGCGATT  243
            ||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct  442  AACGTCGAGAAGATTGGTTTTGGTGTTACCGCAGAAGGGCAGATGATCTTTGACGCGATT  501

Query  244  TCTAAGACGCTTCCTATACGCTGGGAT-AACAAA-AATATGCTGGTAATGGGAGAAGTGA  301
            ||||||||||||||||||||||||| | |||||| || ||||||||||||||||| ||| 
Sbjct  502  TCTAAGACGCTTCCTATACGCTGGG-TGAACAAAGAA-ATGCTGGTAATGGGAGATGTGT  559

Query  302  TTGTTCGTAGCCCTTATCATTCTGATTGTGTCTTTGGAGGAACCCGTGCTG-TCAATGAT  360
            || |||||||||||||||||||||||||||||| ||||||| |||||  || ||||||| 
Sbjct  560  TTATTCGTAGCCCTTATCATTCTGATTGTGTCTATGGAGGACCCCGTA-TGGTCAATGAA  618

Query  361  CGAGTCAAG-ACTGTGCTGGAGCAGGTGAGAAAGAAGTTGCAACTCAGTGACACATGAGA  419
            ||||| ||| | |||||||| ||||| ||||||||||||||||||||||||||| |||| 
Sbjct  619  CGAGTAAAGCA-TGTGCTGGGGCAGGAGAGAAAGAAGTTGCAACTCAGTGACACCTGAG-  676

Query  420  TGAGGCCATTGATGGAGTTGTTCAATGAACATAGAGCAATAGCGTAAGTCTCTACTATCC  479
             ||    ||||| ||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  677  -GAT---ATTGAAGGAGTTGTTCAATGAACATAGAGCAATAGCGTAAGTCTCT--TATCC  730

Query  480  CTAGTAGCAGTACCCTAGATCTGATGCCATGTGTAAATTCGCTTCACGATAAGAAGATTT  539
            |||| |  |||||||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct  731  CTAG-A--AGTACCCTAGATGTGATACCATGTGTAAATTCGATTCACGAGAAGAAGATTT  787

Query  540  AGAGATTTTTGAGTTGCAGAGATTGAATTTTGGTGTTG  577
            |||||||||||||||||||||||| |||||||||||||
Sbjct  788  AGAGATTTTTGAGTTGCAGAGATTTAATTTTGGTGTTG  825


 Score =  217 bits (117),  Expect = 1e-55
 Identities = 164/186 (88%), Gaps = 6/186 (3%)
 Strand=Plus/Plus

Query  1    ATGAAACCAGCAAGTGCTACGGTGGCTAAAC-ACGACGGTGAACGAGAAGACGAGAAATT  59
            ||||||||||||||||||||||||||||||  | ||| | | | |||| |||||||||||
Sbjct  1    ATGAAACCAGCAAGTGCTACGGTGGCTAAAGTA-GACAGCGGAGGAGAGGACGAGAAATT  59

Query  60   CGCGGTGGGGACGGTATACGCTGTCAAGCTGATAACCGGAGA-CGAGTTCAATGGCATTG  118
            || |||||||| ||||||||||||||||||||  |||||||| | ||||||||||||| |
Sbjct  60   CGAGGTGGGGAAGGTATACGCTGTCAAGCTGACCACCGGAGATC-AGTTCAATGGCATCG  118

Query  119  TCTTGGCATATGATTCTGGACCCAACTTCTCCATTTTCGATATCCTATTTCGAAATCAG-  177
            ||||||| |||||||||| |||||||||| || ||||||||||||| |||||||||| | 
Sbjct  119  TCTTGGCTTATGATTCTGAACCCAACTTCGCCGTTTTCGATATCCTTTTTCGAAATC-GC  177

Query  178  TACTCG  183
            ||||||
Sbjct  178  TACTCG  183



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27729249144


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5