BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476150

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70270.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   507    5e-143


> AT1G70270.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G23965.1); 
Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26464400-26464860 
FORWARD LENGTH=461
Length=461

 Score =  507 bits (274),  Expect = 5e-143
 Identities = 364/405 (90%), Gaps = 15/405 (4%)
 Strand=Plus/Plus

Query  1    AAAGTGTTGTCACTCAACAAAAAGACAATGGAGGACTCGAAGAAATACTTGAGGACGGTG  60
            |||||||||||||||||||||||| |||||||||| ||||||||||||   || | ||||
Sbjct  1    AAAGTGTTGTCACTCAACAAAAAGGCAATGGAGGAGTCGAAGAAATACAAAAGTATGGTG  60

Query  61   AAGCAGACGATGAATAAGAAGAAGAGAAACAACAACAA-AACGAATCATGGGTCTGGATC  119
            ||||||||||||||||||||||||| |||||||||||| || |  ||| || ||||||||
Sbjct  61   AAGCAGACGATGAATAAGAAGAAGAAAAACAACAACAAGAA-GGGTCACGGATCTGGATC  119

Query  120  ACGATCCGGGTTACTACAAATGAAGGTGAGGAAGCTCCAAATACTGATACCGGGCGGGCA  179
            ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  120  ACGATCCGGGTTACTCCAAATGAAGGTGAGGAGGCTCCAAATACTGATACCGGGCGGGCA  179

Query  180  GAGATGCAACCACCCGGATCTGCTTTTATCAAAGACCGTTGATTATATTGTGCATTTGAA  239
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GACATGCAACCACCCGGATCTGCTTTTATCAAAGACCGTTGATTATATTGTGCATTTGAA  239

Query  240  GTTGAAGCTTAGGTTCCTTAAAGCACTCGCCGATATGTACTCTCTTTGAAGATCGTAAGA  299
            ||||||||||||||||||||||||| || |||| |||||||||||||||| |||||||||
Sbjct  240  GTTGAAGCTTAGGTTCCTTAAAGCAATCTCCGAAATGTACTCTCTTTGAAAATCGTAAGA  299

Query  300  TTCGTA----T-T-CTTCTTGTCATCGATCGGTACTATATAGCTATGGTGTCGAAGTTTA  353
            || |||    | | |||||| |  ||  ||||||||||||||||||||||||||||||||
Sbjct  300  TTTGTAAAACTATTCTTCTTCTTGTCT-TCGGTACTATATAGCTATGGTGTCGAAGTTTA  358

Query  354  ATTTTCC-tatatatcgataatatatcgtttgtagtttgctttat  397
             |||||| ||| |||||||  |||  | |||||||||||||||||
Sbjct  359  GTTTTCCGTAT-TATCGAT--TAT--CATTTGTAGTTTGCTTTAT  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20458973843


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5