BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476152
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70280.2 | Symbols: | NHL domain-containing protein | chr1:... 2699 0.0
AT1G23880.1 | Symbols: | NHL domain-containing protein | chr1:... 913 0.0
> AT1G70280.2 | Symbols: | NHL domain-containing protein | chr1:26465893-26468706
REVERSE LENGTH=1958
Length=1958
Score = 2699 bits (1461), Expect = 0.0
Identities = 1754/1886 (93%), Gaps = 58/1886 (3%)
Strand=Plus/Plus
Query 1 ACTGAGACACTGTCTTCACTCTTTTTTGCTTATCAACAAAACTCTGCACAAATC-TAACC 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1 ACTGAGACACTGTCTTCACTCTTTTTTGCTTATCAAC-AAACTCTGCACAAATCTTAACC 59
Query 60 TCTCTG----TT-TC-------CT-TC-TTCATCG--AGAAACCTCAAATTTCAAATCTT 103
|||||| || || || || ||||||| |||||||||||||||||||||||
Sbjct 60 TCTCTGTTTCTTCTCTTTAATTCTCTCTTTCATCGAAAGAAACCTCAAATTTCAAATCTT 119
Query 104 CGCATTGTCCGCCATTCTTACT-CTTCCCCCAGAGAAGCTTCTTA-----C-T--TTT-T 153
|||||||||||||||||||| | ||||||| |||||||||||||| | | ||| |
Sbjct 120 CGCATTGTCCGCCATTCTTA-TACTTCCCCTAGAGAAGCTTCTTAGGGTTCTTAGTTTCT 178
Query 154 TCCTCTG-C-CG-C-TCTAAAGTTTAAATCTTGTCTCTTCTTC--AAAATCGAATCAATG 207
||||||| | || | ||| ||||||||| |||||||||||||| ||||| ||||||||
Sbjct 179 TCCTCTGCCGCGTCTTCTCAAGTTTAAAACTTGTCTCTTCTTCTTCAAATCCAATCAATG 238
Query 208 GGTAGAGATTTTCTTGTTCTGAGTATTCTCATTCTACTCCTCTCTGGGTTTGTTTCTTCA 267
|||||||||||||| ||||| ||||||||||||||||| ||||||||| |||| ||||||
Sbjct 239 GGTAGAGATTTTCTAGTTCTAAGTATTCTCATTCTACTTCTCTCTGGGATTGTATCTTCA 298
Query 268 GCTCCTTCAGCTAATTCTCCTGCAAAGATTCTTAATGGGTTTATCTCAAATCATGGCTCT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCTCCTTCAGCTAATTCTCCTGCAAAGATTCTTAATGGGTTTATCTCAAATCATGGCTCT 358
Query 328 TCTCTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAACTATTGCAACGAGA 387
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCACTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAACTATTGCAACGAGA 418
Query 388 TCGATGGTGAAATTTGAAAATGGGTATAGTGTAGAGACAGTGTTCGATGGAAGCAAACTT 447
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 419 TCGATGGTGAAATTCGAAAATGGGTATAGTGTAGAGACTGTGTTTGATGGAAGTAAACTT 478
Query 448 GGTATTGAACCGTATTCGATTGAAGTCTTACCAAACGGCGAGCTACTTATTCTTGATTCT 507
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 479 GGTATTGAACCGTATTCTATTGAAGTCTTACCAAACGGAGAGTTACTTATTCTTGATTCT 538
Query 508 GAGAACAGTAACATCTACAAGATCTCATCTTCTCTTTCATTATATAGCAGGCCGAGACTG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 GAGAACAGTAACATCTACAAGATCTCATCTTCTCTTTCATTATATAGCAGGCCAAGACTG 598
Query 568 GTTACTGGCTCTCCTGAAGGATATCCGGGTCATGTGGACGGGAGATTACGTGATGCGAAG 627
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 599 GTTACTGGCTCCCCTGAAGGATATCCAGGTCATGTTGACGGGAGATTACGTGATGCGAAG 658
Query 628 CTGAATCATCCTAAAGGGCTTACGGTTGATGACAGAGGAAACATATATGTGGCTGACACT 687
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 659 CTGAACCATCCTAAGGGGCTTACGGTTGATGACAGAGGAAATATATATGTGGCTGATACT 718
Query 688 GTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTTACAACAATTGCTGGGGGCAAA 747
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 719 GTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTTACAACTATTGCCGGGGGCAAA 778
Query 748 ACGGTTCGAAATGGAGGGCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCCAATGAT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 ACGGTTCGAAATGGAGGGCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCAAATGAT 838
Query 808 TTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCTTCTTGTTATTGACCGAGGAAATAAA 867
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 839 TTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCTGCTTGTTATTGACCGTGGAAACAAA 898
Query 868 GCCATCAGAGAGATTCAACTCCATTTCGATGACTGTGCTTATCAGTATGGAAGCGGGTTT 927
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTATCAGAGAGATTCAACTCCATTTCGATGACTGTGCTTATCAGTATGGAAGCGGGTTT 958
Query 928 CCTCTTGGGATTGCGGTTCTTGTTGCTGCAGGTTTCTTTGGTTATATGCTAGCTCTGTTG 987
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCTCTTGGGATTGCTGTTCTTGTTGCTGCAGGTTTCTTTGGTTATATGCTAGCTCTGTTG 1018
Query 988 CAACGAAGAGTCGGTTCTATCGTTTCTTCTCATAATGATCAAGAAATGTACGAAGCTGAT 1047
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1019 CAACGAAGAGTCGGCTCTATCGTGTCTTCTCATAATGATCAAGAAATGTTCGAAGCTGAT 1078
Query 1048 CCTGATCAAAAGTCTATGAAACCA-TCTAGACCATCTCTTATTCCAACCGGAGATGAGCA 1106
|||||||||||| |||||||| || || ||||||||||| ||||| | ||||| |||||
Sbjct 1079 CCTGATCAAAAGCCTATGAAA-CATTCCAGACCATCTCTGATTCCGGCTGGAGACGAGCA 1137
Query 1107 GCAAGAGAAACAAGAGGAAACCTTTGTGGTATCGCTGGGAAAACTCGTTTCAAATGCTTG 1166
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTAGAGAAACAAGAGGAAACATTTGTGGTATCGCTGGGAAAACTCGTTTCAAATGCTTG 1197
Query 1167 GGATTCCGTTATGGAGATCCTCCGAAAAAAGCAGACAGGCACCAGCTATCAGCAGTACCA 1226
||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1198 GGAGTCAGTTATGGAGATCCTTAGAAAAAAGCAGACAGGCACCAGCTTTCAGCAGTACCA 1257
Query 1227 TGGGACAACAAAGCAGTCTGCTGCATTTAGCACATCAACTCCATGGCCAATTCAAGAGAG 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGGGACAACAAAGCAGTCTGCTGCATTTAGCACATCAACTCCATGGCCAATTCAAGAGAG 1317
Query 1287 CTTTGTGATTCGAGACGAAGACGAACCTCCTCCAGTTGAGCCCAGGAACCCAACTCCAAG 1346
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1318 CTTTGTGATTCGAGACGAAGACGGACCTCCTCCTGTTGAGCCCAGGAACCCAACTCCAAG 1377
Query 1347 AAAAACTTATGCTTTTATGTCCAAAGACGCTGAGAAAATGCAGCAGCTGCGTCAGAGCCG 1406
||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1378 AAAGACTTATGCTTTTATGTCCAAAGATGCAGAGAAAATGCAGCAGCTACGTCAGAGCCG 1437
Query 1407 TGCATTCTACAGTAGCTGGGACGCAGAATTCCCCAATcagca--a-cagcagcaaaagca 1463
||||||||||||||||||||||| || |||||||| ||||| | ||||||||||||||
Sbjct 1438 CGCATTCTACAGTAGCTGGGACGCTGAGTTCCCCAACCAGCAGCAACAGCAGCAAAAGCA 1497
Query 1464 gcaccagaagcatcagcatcagca------gcagca------TCGAAGGCATTACTCATC 1511
|||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1498 GCACCAGAAGCATCAGCATCAGCAACAACAGCAGCAGCAGCATCGAAGGCATTACTCATC 1557
Query 1512 GATCCCGCATACTTATTATGAGCAGGACAGTGAAAAAACTAATGAGATAGTCTTCGGAGC 1571
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1558 GATCCCGCATACTTATTATGAGCAGGACAGTGAAAAGTCTAATGAGATAGTCTTTGGAGC 1617
Query 1572 GGTCCAAGAACAGAGCAGCAAGCGCGTGGCTAAGCCTAAGCCGAAGCCTATAGAGTCTGG 1631
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1618 GGTCCAAGAACAGAGCAGCAAGCGTGTGGCTAAGCCTAAGCCGAAGCCTATAGAGTCTGG 1677
Query 1632 AGATCAAATGAATAATA---CTCAACAGAATCTTCACTACAGATCTCATTCTGTTAGTTA 1688
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AGATCAAATGAATAATAATACTCAACAGAATCTTCACTACAGATCTCATTCTGTTAGTTA 1737
Query 1689 CCCATATGGATACTATCCGCATACATGAAAAGTCTCCGGTTTTGTGAGTTTATGGGATTA 1748
|||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||
Sbjct 1738 CCCATATGGATACTATCCTAATACATGAAAAGTCTCCGGTTTTGTGCGTTTCTGAGATTA 1797
Query 1749 TAAGTCTTCCTTAATAAGATTATGCAGGAAATGAAATATTTTTGGGTATAGGTGGGTTTG 1808
| |||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||||
Sbjct 1798 TCAGTCTTCCTTAATAAGATTATGCAGGGAATTAAAT-TTTTTGGGTATAGGTG--TTTG 1854
Query 1809 TATTGGGGAATTTTAAGATTATGCTC 1834
|||||||||||||||||| |||||||
Sbjct 1855 TATTGGGGAATTTTAAGAGTATGCTC 1880
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1832 CTCATACTTTGATTGTATTGGGTAATATATATATGGAAAAA 1872
||||||||||||||||||||||||||||||||||| |||||
Sbjct 1899 CTCATACTTTGATTGTATTGGGTAATATATATATGAAAAAA 1939
> AT1G23880.1 | Symbols: | NHL domain-containing protein | chr1:8435657-8438745
FORWARD LENGTH=2215
Length=2215
Score = 913 bits (494), Expect = 0.0
Identities = 1068/1332 (80%), Gaps = 91/1332 (7%)
Strand=Plus/Plus
Query 204 AATGGGTAGAG-ATTTTCTTG-TTCTGAGTATTCTCATTCTACTCCTCTCTGGGTTTGTT 261
|||| |||| | |||||| || ||||| ||||| ||||||| ||| |||||| |||||||
Sbjct 648 AATGAGTAG-GCATTTTC-TGTTTCTGGGTATTATCATTCTTCTCTTCTCTGCGTTTGTT 705
Query 262 TCTTCAGCTCCTTCAGCTAA-TTCTCCTGCAAAGATTCTTAATGGGTTT-ATCTCAAATC 319
|||||||||||||| | || ||| ||||| |||||| ||||| |||| ||||||||||
Sbjct 706 GCTTCAGCTCCTTCATC-AACTTCACCTGCGAAGATTGTTAAT-AGTTTCATCTCAAATC 763
Query 320 ATGGCTCTT-CTCTAATGAAATGGTTATGG----TCAC--TCAAAACCACAACCAAAACA 372
||||| ||| || || |||||||||||||| || | |||||||||| || ||||||
Sbjct 764 ATGGCACTTCCT-TATTGAAATGGTTATGGTCTCTCTCTTTCAAAACCACCACTAAAACA 822
Query 373 ACTATTGCAACGAGATCGATGGTGAAATTTGAAAATGGGTA-T-AGTGTAGAGACAGTGT 430
|| || | |||| ||||||||||||||| ||||||||||| | |||| || || ||||
Sbjct 823 GCTGTTCCTACGAAATCGATGGTGAAATTCGAAAATGGGTATTCAGTG--GAAACGGTGT 880
Query 431 TCGATGGAAGCAAACTTGGTATTGAACCGTATTCGATTGAAGTCTTA-CCAAACGGCGAG 489
| || ||||||||||| ||||| ||||| ||||| ||| | |||||| || || |||||
Sbjct 881 TAGACGGAAGCAAACTCGGTATCGAACCTTATTCTATTCAGGTCTTATCC-AATGGCGAA 939
Query 490 CTACTTATTCTTGATTCTGAGAACAGTAACATCTACAAGATCTCATCTTCTCTTT-CATT 548
| |||||||| |||||| |||| |||||||| ||| |||| ||||||||||||| | ||
Sbjct 940 TTGCTTATTCTGGATTCTCAGAATAGTAACATTTACCAGATTTCATCTTCTCTTTCCCTT 999
Query 549 ATATAGCAGGCCGAGACTGGTTACTGGCTCTCCTGAAGGATATCCGGGTCATGTGGACGG 608
|||||||| || || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1000 -TATAGCAGACCCAGGCTAGTTACTGGCTCCCCTGAAGGATATCCGGGTCATGTGGACGG 1058
Query 609 GAGATTACGTGATGCGAAGCTGAATCA-TCCTAAAGGG-CTTACGGTTGATGACAGAGGA 666
|||||| | || |||| | |||| || |||||| ||| || || |||||||| ||||||
Sbjct 1059 TAGATTAAGGGACGCGAGGTTGAA-CAATCCTAA-GGGACTCACAGTTGATGATAGAGGA 1116
Query 667 AACATATATGTGGCTGACACTGTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTT 726
|| || ||||| || || |||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 1117 AATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAGGAGTC 1176
Query 727 ACAACAATTGCTGGGGGCAAAACGGTTCGAAATGGAGGGCATGTGGATGGACCAAGTGAA 786
||||| ||||||||||| |||| |||||| ||||| ||||||||||| |||||||||
Sbjct 1177 ACAACCATTGCTGGGGGGAAAATGGTTCGTGGGGGAGGTCATGTGGATGGTCCAAGTGAA 1236
Query 787 GATGCAAAGTTTTCCAATGATTTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCTT-CT 845
|||||||||||||| ||||||||||||||||||||| | || || |||||||| ||| ||
Sbjct 1237 GATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGGAGCAGTTGTTC-CTTGCT 1295
Query 846 TGTTATTGACCGAGGAAATAAAGCCATCAGAGAGATTCAACTCCATTTCGATGACTGTGC 905
|| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 1296 AGTCATTGACCGAGGAAACCAAGCCATCAGAGAGATTCAACTCCATTTTGACGACTGTGC 1355
Query 906 TTATCAGTATGGAAGCGGGTTTCCTCTTGGGATTGCGGTTCTTGTTGCTGCAGGTTTCTT 965
| ||||||||||||| || |||||||| |||||||| |||||||| || |||| ||||||
Sbjct 1356 TGATCAGTATGGAAGTGGCTTTCCTCTGGGGATTGCAGTTCTTGTAGCGGCAGTTTTCTT 1415
Query 966 TGGTTATATGCTAGCTCT-GTTGCAACGAAGAGTCGGTTCTATCGTTTCTTCTCATAATG 1024
||| |||||||| || || ||||||||| ||| || ||||||||||||| | ||||| ||
Sbjct 1416 TGGCTATATGCTGGC-CTTGTTGCAACGTAGACTCAGTTCTATCGTTTCATATCATACTG 1474
Query 1025 ATCAAGAAATGTACGAAGCTGAT-CCTGATCAAAAGTC-TATGAAACCA-TCTAGACCAT 1081
|||||||| ||| ||||||| | ||||||||| | || ||| ||||| || ||||||
Sbjct 1475 ATCAAGAAGTGTTTGAAGCTG-TGCCTGATCAAGA-TCCTATAAAACCGGTC-AGACCAC 1531
Query 1082 CTCTTATTCCAACCGGAGATGAGCAGCAAGAGAAACAAGAGGAAACCTTTGT-GGTATCG 1140
| || |||| ||| ||||| ||||| | || |||||||| |||| ||| | || | ||
Sbjct 1532 CGCTAATTCTAACTGGAGACGAGCA--A-GAAAAACAAGAAGAAAGCTTCCTTGGAA-CG 1587
Query 1141 CTGG-GAAAACTCGTTTCAAATGCTTGGGA-TT--C-------C-GTT-A-TGGA--GAT 1184
|| || | || ||||||||||||||| || | | ||| | |||| | |
Sbjct 1588 TTGCAGATAT-TCATTTCAAATGCTTGGGTGTTTTCTGTGGAGCTGTTCAGTGGAATGTT 1646
Query 1185 -CC---TC-C-GAAAAAAGCAGACAGGCACCAGCTATCAGCAGT-A-CCATGG-GACAAC 1235
|| || | |||| |||||||||| | ||| | | | | | |||| || |||
Sbjct 1647 TCCCGGTCTCAGAAAGAAGCAGACAGTCG---GCT-TGAACT-TCAACCATCAAGA-AAC 1700
Query 1236 AAAGCAGTCTGCTGCATTTAGCACATCAACTCCATGGCCAATTCAAGAGAGCTTTGTGAT 1295
|||||| |||||| ||||||||| | || |||||||||||||||| |||||||| ||
Sbjct 1701 AAAGCATTCTGCT---TTTAGCACA--A-CTTCATGGCCAATTCAAGAAAGCTTTGTAAT 1754
Query 1296 TCGAGA-CGAAGACGAACCTCCTCCAGTTGAGCCCAGGAAC-CCAACTCCAAGAAAAACT 1353
| | | | |||| ||||| ||||| || ||| |||||||| ||| |||| |||||| |
Sbjct 1755 AC-ACAACAAAGATGAACCACCTCCCGTCGAGTCCAGGAACGCCA-CTCCTGGAAAAATT 1812
Query 1354 TATGCTTTTATGTCCAAAGACGCT---GAGAAAATGCAGCAGCTGCGTCAGAGCCGTGCA 1410
||| |||| ||||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct 1813 TATCCTTTCATGTCCAAAGATGCAACAGAGAAAATGCAACAGCTGCGCCAAAGCCGTGCC 1872
Query 1411 TTCTACAGTAGCTGGGACGCAGAATTCCCCAATcagcaacagcagcaaaagcagcaccag 1470
|| ||||| |||| |||||| ||||||| | ||| | ||||| ||| || |||| |||
Sbjct 1873 TTGTACAGAAGCTTGGACGCCGAATTCCTC---CAGGAGCAGCAACAAGAGAAGCATCAG 1929
Query 1471 aagcatcagcat 1482
|| |||| |||
Sbjct 1930 CAGTATCACCAT 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5