BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476155
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70310.1 | Symbols: SPDS2 | spermidine synthase 2 | chr1:264... 1685 0.0
AT1G23820.1 | Symbols: SPDS1 | spermidine synthase 1 | chr1:842... 996 0.0
> AT1G70310.1 | Symbols: SPDS2 | spermidine synthase 2 | chr1:26485306-26487435
REVERSE LENGTH=1297
Length=1297
Score = 1685 bits (912), Expect = 0.0
Identities = 1045/1109 (94%), Gaps = 9/1109 (1%)
Strand=Plus/Plus
Query 1 AGATAGAGACACACACTAAAACCCTAACCTCTCACTCACTGTCTCTCTT-AGC-ATCCAT 58
||| ||||| | ||||||||||||||| |||| |||||||||||||||| | ||||||
Sbjct 26 AGAGAGAGAGAGACACTAAAACCCTAATCTCTTACTCACTGTCTCTCTTCTTCAATCCAT 85
Query 59 GTCTTCAACACAAGAAGCTTCCGTTACTGATTTACCCGTGAAGAGACCTAGAGAAGCAGA 118
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 86 GTCTTCAACACAAGAAGCGTCTGTTACTGATTTGCCCGTGAAGAGACCTAGAGAAGCAGA 145
Query 119 GGAGGACAATAACGGCGCCGCCATGGAAACAGAGAACGGTGGAGGAGAAATAAAGGAGCC 178
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 146 GGAGGACAATAACGGCGGCGCCATGGAAACAGAGAACGGTGGAGGAGAGATAAAGGAGCC 205
Query 179 TTCTTGTATGTCCTCTGTTATTCCTGGATGGTTCTCTGAGATCAGTCCTATGTGGCCAGG 238
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 206 TTCTTGTATGTCCTCTATTATTCCTGGATGGTTCTCTGAGATTAGTCCTATGTGGCCAGG 265
Query 239 AGAAGCACATTCTCTGAAAGTAGAGAAGATTCTCTTCCAAGGAAAATCAGATTATCAAGA 298
||||||||||||||| || |||||||||||||| |||||||| ||||||||||| || ||
Sbjct 266 AGAAGCACATTCTCTCAAGGTAGAGAAGATTCTATTCCAAGGGAAATCAGATTACCAGGA 325
Query 299 TGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TGTTATTGTTTTCCAGTCTGCAACATATGGAAAGGTTTTGGTTTTGGATGGAGTGATTCA 385
Query 359 ACTCACTGAAAGAGATGAATGTGCGTATCAGGAAATGATCACTCACCTTCCCTTGTGCTC 418
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 386 ACTCACTGAGAGAGATGAATGTGCGTATCAAGAAATGATCACTCATCTTCCTTTGTGCTC 445
Query 419 TATCTCCAACCCCAAAAAGGTCCTGGTTATTGGAGGAGGAGATGGAGGAGT-CTTACGGG 477
||||||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct 446 TATCTCCAACCCCAAAAAGGTACTGGTGATTGGAGGAGGAGATGGAGGAGTCCTGA-GGG 504
Query 478 AAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAGATTGATAAAATGGTGG 537
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 505 AAGTGGCACGTCATAGTTCTGTTGAGCAGATTGACATTTGTGAAATAGATAAAATGGTGG 564
Query 538 TTGATGTGGCTAAGCAGTTTTTCCCTAATGTAGCAGTTGGATACGAGGATTCTCGTGTCA 597
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 565 TTGATGTGGCTAAGCAGTATTTCCCTAATGTAGCAGTTGGATACGAGGATCCTCGTGTCA 624
Query 598 ACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTGAAGGAACCTATGATG 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 625 ACCTCATCATTGGCGATGGTGTTGCTTTCTTGAAGAACGCTGCTGAAGGAACCTATGATG 684
Query 658 CAGTTATTGTTGATTCATCGGATCCGATTGGTCCAGCAAAAGAGCTATTTGAGAAACCTT 717
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 685 CAGTTATTGTTGATTCATCTGATCCAATCGGTCCAGCAAAAGAGCTATTTGAGAAACCTT 744
Query 718 TCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TCTTTGAGTCAGTGAATAGAGCTCTTCGTCCTGGTGGAGTTGTGTGCACACAAGCTGAAA 804
Query 778 GCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTTCGAATTGCCGTGAGATCTTTA 837
||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 805 GCTTGTGGCTTCACATGGATATCATTGAAGACATTGTTTCTAATTGCCGTGACATCTTTA 864
Query 838 AAGGATCTGTTAACTACGCTTGGACTAGCGTTCCAACTTACCCGAGCGGAGTCATTGGAT 897
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 865 AAGGATCTGTTAACTACGCTTGGACCAGTGTTCCAACTTACCCGAGTGGAGTCATTGGAT 924
Query 898 TCATGCTTTGTTCGA-CTGAAGGACCACATGTCGATTTCAAGAAGCCAGTGAGTCCAATC 956
||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 925 TCATGCTTTGTTC-ATCTGAAGGACCACAAGTCGATTTCAAGAAGCCAGTGAGTCTAATC 983
Query 957 GATGCCGATGAAAGCTCTAGCAAATCACA-TGGACCCTTGAAGTTTTACAACGCTGAGAT 1015
||| | ||||||||||||| ||||||||| || |||||||||| |||||||||||||||
Sbjct 984 GATACTGATGAAAGCTCTATCAAATCACACTGT-CCCTTGAAGTATTACAACGCTGAGAT 1042
Query 1016 TCACTCTGCCGCTTTCTGCTTACCCTCTTTCGCTAAGAAGGTGATTGATTCGAAAGCCAA 1075
|||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1043 TCACTCAGCTGCTTTCTGCTTGCCCTCTTTTGCTAAGAAGGTGATTGATTCGAAAGCCAA 1102
Query 1076 CTAGAAA-GAGAAGAGAAATCGTTTACTT 1103
||||||| ||||||||||||| ||| |||
Sbjct 1103 CTAGAAAAGAGAAGAGAAATCATTTGCTT 1131
> AT1G23820.1 | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420265-8422985
FORWARD LENGTH=1411
Length=1411
Score = 996 bits (539), Expect = 0.0
Identities = 855/1006 (85%), Gaps = 28/1006 (3%)
Strand=Plus/Plus
Query 97 TGAAGAGACCTAGAGAAGCAGAGGAGGACAATAACGGCGCCG---CCATGGAAACAGAGA 153
|||| ||||| ||| || |||||| || || |||||||| ||||||| || ||||
Sbjct 177 TGAAAAGACC--GAG-AGAAGAGGATGATAACGGCGGCGCCGCTACCATGGAGACGGAGA 233
Query 154 ACGGTGGAGGAGAAATAAAGGAGCCTTCTTGTATGTCCTCTGTTATTCCTGGATGGTTCT 213
|||| || || || |||||| ||| ||||| | ||| ||||||||||||| |||||||
Sbjct 234 ACGG-AGATCAG-AA-AAAGGAACCTGCTTGTTTCTCCACTGTTATTCCTGGGTGGTTCT 290
Query 214 CTGAGATCAGTCCTATGTGGCCAGGAGAAGCACATTC-TCTGAAAGTAGAG-AAGATTCT 271
|||| || |||||||||||||||||||| ||||| || | |||| || ||| ||| || |
Sbjct 291 CTGAAATGAGTCCTATGTGGCCAGGAGAGGCACACTCAT-TGAAGGTTGAGAAAG-TTTT 348
Query 272 CTTCCAAGGAAAATCAGATTATCAAGATGTTATTGTTTTCCAGTCTGCAACATATGGAAA 331
|| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 349 GTTTCAAGGGAAATCAGATTATCAGGATGTTATTGTTTTCCAGTCTGCAACATATGGAAA 408
Query 332 GGTTTTGGTTTTGGATGGAGTGATTCAACTCACTGAAAGAGATGAATGTGCGTATCAGGA 391
|||||||||||||||||||| || ||||| || || |||||||||||||| ||||||||
Sbjct 409 AGTTTTGGTTTTGGATGGAGTAATCCAACTTACGGAGAGAGATGAATGTGCTTATCAGGA 468
Query 392 AATGATCACTCACCTTCCCTTGTGCTCTATCTCC-AACCCCAAAAAGGTCCTGGTTATTG 450
|||||||||||| ||||| ||||| |||||| || ||||| || ||||| |||| ||||
Sbjct 469 AATGATCACTCATCTTCCTTTGTGTTCTATC-CCTAACCCTAAGAAGGTTTTGGTCATTG 527
Query 451 GAGGAGGAGATGGAGGAGTCTTACGGGAAGTGGCACGTCATAG-TTCTGTTGAGCAGATT 509
|||||||||||||||| ||| | |||||||| ||||| ||| | |||| |||||||||||
Sbjct 528 GAGGAGGAGATGGAGGTGTCCTGCGGGAAGTTGCACGCCAT-GCTTCTATTGAGCAGATT 586
Query 510 GACATTTGTGAGATTGATAAAATGGTGGTTGATGTGGCTAAGCAGTTTTTCCCTAATGTA 569
||||| ||||| ||||||||||||||||| || ||| ||||||| ||||||||| |||||
Sbjct 587 GACATGTGTGAAATTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTA 646
Query 570 GCAGTTGGATACGAGGATTCTCGTGTCAACCTCATCATTGGCGATGGTGTTGCTTTCTTG 629
||| ||||||| |||||| |||| || ||||| ||||||||||||||||||||||||||
Sbjct 647 GCAATTGGATATGAGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTG 706
Query 630 AAGAATGCTGCTGAAGGAACCTATGATGCAGTTATTGTTGATTCATCGGATCCGATTGGT 689
|||||||||||||||||| | || ||||||||||||||||| || || ||||| || |||
Sbjct 707 AAGAATGCTGCTGAAGGATCATACGATGCAGTTATTGTTGACTCTTCAGATCCAATCGGT 766
Query 690 CCAGCAAAAGAGCTATTTGAGAAACCTTTCTTTGAGTCAGTGAATAGAGCTCTTCGTCCT 749
|| ||||| ||||| ||||||||||| ||||| | || ||| ||||||||||||||||
Sbjct 767 CCTGCAAAGGAGCTGTTTGAGAAACCCTTCTTCCAATCTGTGGCTAGAGCTCTTCGTCCT 826
Query 750 GGTGGAGTTGTGTGCACACAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGAC 809
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GGTGGAGTTGTGTGCACTCAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGAC 886
Query 810 ATTGTTTCGAATTGCCGTGAGATCTTTAAAGGATCTGTTAACTACGCTTGGACTAGCGTT 869
|||||||| || |||||||||||||| || || ||||| ||||| |||||||| ||||||
Sbjct 887 ATTGTTTCCAACTGCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCTTGGACCAGCGTT 946
Query 870 CCAACTTACCCGAGCGGAGTCATTGGATTCATGCTTTGTTCGACTGAAGGACCACATGTC 929
||||| ||||| || || ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 947 CCAACATACCCCAGTGGGGTCATTGGATTTATGCTTTGTTCAACTGAAGGACCTGATGTT 1006
Query 930 GATTTCAAGA-AGCCAGTGAGTCCAATCGATGCCGATGAAAGCTCTAGCAAATCACATGG 988
|| ||||| | | ||| ||| ||||| || | || || |||| ||||||||| ||||
Sbjct 1007 GACTTCAA-ACACCCACTGAACCCAATTGA--C-GA-GA--GCTCCAGCAAATCAAATGG 1059
Query 989 ACCCTTGAAGTTTTACAACGCTGAGATTCACTCTGCCGCTTTCTGCTTACCCTCTTTCGC 1048
||| |||||||||||||| || |||||||| || || || |||||||| || ||||||||
Sbjct 1060 ACCTTTGAAGTTTTACAATGCCGAGATTCATTCAGCTGCATTCTGCTTGCCTTCTTTCGC 1119
Query 1049 TAAGAAGGTGATTGATTCGAAAGCCAACTAGAAA-GAGAAGAGAAA 1093
|||||||| ||||| || |||||||| | |||| | ||| |||||
Sbjct 1120 CAAGAAGGTCATTGAGTCAAAAGCCAATT-GAAAAGGGAA-AGAAA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5